Wall clock time and date at job start Tue Mar 31 2020 08:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 C 1.50698 * 109.47434 * 119.99837 * 2 1 3 5 5 C 1.38129 * 120.03746 * 305.01127 * 4 2 1 6 6 C 1.38259 * 120.07287 * 179.71940 * 5 4 2 7 7 C 1.38302 * 120.14268 * 0.25883 * 6 5 4 8 8 C 1.38094 * 120.06832 * 0.02562 * 7 6 5 9 9 C 1.38858 * 120.03738 * 125.26622 * 4 2 1 10 10 N 1.39927 * 120.06758 * 0.02562 * 9 4 2 11 11 C 1.34778 * 119.99449 * 205.14777 * 10 9 4 12 12 O 1.21285 * 120.00560 * 5.49964 * 11 10 9 13 13 C 1.50702 * 119.99414 * 185.50741 * 11 10 9 14 14 N 1.46909 * 109.46916 * 179.97438 * 13 11 10 15 15 C 1.46895 * 110.99771 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47680 * 35.00196 * 15 14 13 17 17 C 1.52999 * 109.47230 * 275.00042 * 15 14 13 18 18 C 1.50706 * 109.46932 * 155.00223 * 15 14 13 19 19 H 1.07991 * 119.99987 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99773 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00360 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99707 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47184 * 119.99836 * 22 20 18 25 25 H 1.48497 * 109.47299 * 240.00136 * 22 20 18 26 26 H 1.09004 * 109.47184 * 299.99883 * 1 2 3 27 27 H 1.08998 * 109.47608 * 60.00303 * 1 2 3 28 28 H 1.09005 * 109.46912 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47184 * 240.00117 * 2 1 3 30 30 H 1.08997 * 109.47305 * 59.99814 * 3 2 1 31 31 H 1.08999 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46651 * 299.99951 * 3 2 1 33 33 H 1.08001 * 119.96287 * 0.02562 * 5 4 2 34 34 H 1.08007 * 119.92727 * 180.23529 * 6 5 4 35 35 H 1.08001 * 119.96230 * 179.97438 * 7 6 5 36 36 H 1.07993 * 120.03388 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00154 * 25.14772 * 10 9 4 38 38 H 1.09001 * 109.46982 * 299.99439 * 13 11 10 39 39 H 1.08999 * 109.47931 * 59.99904 * 13 11 10 40 40 H 1.00898 * 110.99771 * 303.95423 * 14 13 11 41 41 H 1.09001 * 109.47237 * 60.00581 * 17 15 14 42 42 H 1.09010 * 109.47316 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47246 * 299.99920 * 17 15 14 44 44 H 0.96995 * 120.00326 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6160 -0.3024 2.4827 6 6 2.0719 -0.9573 3.6118 7 6 2.9501 -2.0190 3.4918 8 6 3.3747 -2.4280 2.2430 9 6 2.9184 -1.7723 1.1069 10 7 3.3466 -2.1842 -0.1600 11 6 3.7629 -3.4518 -0.3513 12 8 3.6731 -4.2618 0.5469 13 6 4.3402 -3.8625 -1.6814 14 7 4.7160 -5.2819 -1.6348 15 6 5.2832 -5.7187 -2.9175 16 1 5.8563 -4.9028 -3.3580 17 6 4.1512 -6.1172 -3.8665 18 6 6.1879 -6.9023 -2.6896 19 1 6.3277 -7.2908 -1.6918 20 6 6.8369 -7.4890 -3.7553 21 7 6.6662 -7.0162 -4.9705 22 14 7.9588 -8.9557 -3.4727 23 1 7.9800 -9.2913 -2.0264 24 1 7.4543 -10.1205 -4.2433 25 1 9.3335 -8.6215 -3.9240 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9563 -0.8901 33 1 0.9297 0.5258 2.5798 34 1 1.7419 -0.6388 4.5897 35 1 3.3047 -2.5283 4.3758 36 1 4.0600 -3.2574 2.1499 37 1 3.3439 -1.5576 -0.9004 38 1 3.5965 -3.7087 -2.4633 39 1 5.2229 -3.2602 -1.8961 40 1 5.3562 -5.4617 -0.8759 41 1 3.4969 -5.2611 -4.0313 42 1 4.5722 -6.4417 -4.8182 43 1 3.5781 -6.9331 -3.4260 44 1 7.1231 -7.4287 -5.7201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602863601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:13 Heat of formation + Delta-G solvation = -34.559506 kcal Electronic energy + Delta-G solvation = -22777.196011 eV Core-core repulsion = 19500.260100 eV Total energy + Delta-G solvation = -3276.935911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.45 seconds Orbital eigenvalues (eV) -41.78628 -39.84916 -37.51450 -36.33404 -35.70854 -34.50837 -31.55021 -30.75694 -30.09321 -27.95420 -27.55616 -26.66711 -24.68452 -23.40926 -21.78307 -21.38199 -20.90397 -19.21454 -18.54065 -17.88355 -17.16286 -16.66401 -16.51336 -16.01409 -15.78154 -15.42284 -15.03835 -14.82875 -14.64397 -14.60923 -14.48188 -14.27414 -13.60493 -13.37319 -13.19093 -12.97440 -12.91295 -12.86308 -12.68614 -12.67168 -12.32894 -12.21474 -12.03326 -12.01915 -11.77970 -11.58976 -11.40228 -10.95603 -10.72058 -10.57417 -9.65802 -9.14190 -8.97082 -8.16035 -6.29180 0.32458 0.47490 1.39978 1.42485 1.54216 1.57230 1.93781 2.41207 2.89093 3.12826 3.59474 3.67268 3.73354 3.85894 4.21266 4.28455 4.32182 4.35720 4.38185 4.41985 4.53378 4.60604 4.75402 4.82099 4.85490 4.97953 5.02416 5.06293 5.08083 5.16815 5.21899 5.30119 5.40049 5.42036 5.44417 5.52037 5.62221 5.64405 5.66300 5.82122 6.13480 6.20065 6.33927 6.40979 6.70082 6.91079 7.09757 7.40888 8.89750 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003075 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.994244 B = 9103.264451 C = 9837.106825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.096 4.096 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.158 4.158 9 C 0.134 3.866 10 N -0.661 5.661 11 C 0.516 3.484 12 O -0.540 6.540 13 C 0.046 3.954 14 N -0.680 5.680 15 C 0.217 3.783 16 H -0.015 1.015 17 C -0.115 4.115 18 C -0.542 4.542 19 H 0.053 0.947 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.961 3.039 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.277 1.277 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.423 0.577 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.335 0.665 41 H 0.030 0.970 42 H 0.061 0.939 43 H 0.022 0.978 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 19.935 11.347 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 C -0.197 4.197 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.157 4.157 7 C -0.133 4.133 8 C -0.178 4.178 9 C 0.040 3.960 10 N -0.308 5.308 11 C 0.305 3.695 12 O -0.416 6.416 13 C -0.087 4.087 14 N -0.312 5.312 15 C 0.110 3.890 16 H 0.002 0.998 17 C -0.174 4.174 18 C -0.580 4.580 19 H 0.071 0.929 20 C -0.182 4.182 21 N -0.553 5.553 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.203 1.203 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.262 0.738 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.153 0.847 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.432 19.066 11.565 25.059 hybrid contribution 1.675 -0.545 -0.426 1.812 sum -9.757 18.521 11.139 23.713 Atomic orbital electron populations 1.21831 0.93294 1.01530 1.03115 1.20101 0.96925 0.96551 0.93971 1.21842 1.00876 0.93905 1.03064 1.19842 0.97072 0.97154 0.97093 1.21095 0.99559 1.00080 0.90696 1.21418 0.98255 0.96034 0.99946 1.21258 0.98025 0.97440 0.96579 1.21397 1.02314 1.01560 0.92522 1.17870 0.96818 0.96728 0.84611 1.43513 1.64177 1.12156 1.10906 1.21094 0.76866 0.81240 0.90315 1.90646 1.54109 1.51837 1.45027 1.21866 1.01170 0.91669 0.93986 1.60391 1.48969 1.14894 1.06972 1.18976 0.91129 0.93528 0.85407 0.99778 1.21578 0.96970 0.98157 1.00684 1.21586 1.26856 1.15564 0.93982 0.92873 1.25654 0.97964 0.99781 0.94808 1.69993 1.43628 1.42289 0.99350 0.85469 0.78504 0.79203 0.78216 1.19621 1.20457 1.20253 0.91269 0.90999 0.94043 0.91087 0.91545 0.93099 0.90994 0.83192 0.83401 0.84851 0.86533 0.73782 0.87119 0.91254 0.84713 0.95136 0.92027 0.95861 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.95 71.98 0.64 -1.20 16 2 C -0.06 -0.84 2.98 -11.54 -0.03 -0.88 16 3 C -0.14 -1.59 9.05 71.98 0.65 -0.94 16 4 C -0.11 -2.18 4.80 -19.74 -0.09 -2.27 16 5 C -0.10 -1.64 8.75 22.25 0.19 -1.44 16 6 C -0.14 -2.49 10.04 22.29 0.22 -2.26 16 7 C -0.11 -2.65 10.04 22.25 0.22 -2.42 16 8 C -0.16 -4.60 8.72 22.39 0.20 -4.41 16 9 C 0.13 3.52 6.41 38.15 0.24 3.76 16 10 N -0.66 -16.77 5.05 -303.50 -1.53 -18.30 16 11 C 0.52 17.11 7.67 87.66 0.67 17.78 16 12 O -0.54 -22.16 13.37 -3.05 -0.04 -22.20 16 13 C 0.05 1.55 5.97 85.56 0.51 2.06 16 14 N -0.68 -30.23 5.93 -499.44 -2.96 -33.19 16 15 C 0.22 11.06 2.60 44.17 0.11 11.17 16 16 H -0.02 -0.82 7.80 -2.39 -0.02 -0.84 16 17 C -0.12 -5.71 9.19 71.98 0.66 -5.05 16 18 C -0.54 -30.34 8.59 25.60 0.22 -30.12 16 19 H 0.05 3.00 7.62 -2.91 -0.02 2.98 16 20 C 0.02 0.97 5.30 84.66 0.45 1.42 16 21 N -0.91 -51.91 11.32 21.45 0.24 -51.67 16 22 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 26 H 0.07 0.75 7.13 -2.38 -0.02 0.73 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 1.07 5.99 -2.38 -0.01 1.05 16 30 H 0.07 0.65 7.70 -2.39 -0.02 0.64 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.15 1.68 7.10 -2.91 -0.02 1.65 16 34 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.12 4.06 5.79 -2.91 -0.02 4.05 16 37 H 0.42 7.89 6.91 -92.71 -0.64 7.25 16 38 H 0.11 3.42 7.44 -2.39 -0.02 3.40 16 39 H 0.07 2.17 8.06 -2.39 -0.02 2.15 16 40 H 0.34 15.49 7.93 -89.70 -0.71 14.78 16 41 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 42 H 0.06 3.31 6.07 -2.38 -0.01 3.29 16 43 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 44 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -67.47 353.70 2.27 -65.20 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.34 Total: 28.97 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.88 Total: -14.80 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.25 Total: -103.17 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.04 Total: -22.20 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.47 2.27 -65.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.642 kcal (2) G-P(sol) polarization free energy of solvation -67.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.45 seconds