Wall clock time and date at job start Tue Mar 31 2020 08:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46901 * 2 1 4 4 C 1.50690 * 109.47466 * 239.99568 * 2 1 3 5 5 H 1.07997 * 120.00456 * 240.00145 * 4 2 1 6 6 C 1.37880 * 119.99948 * 60.00025 * 4 2 1 7 7 N 1.31516 * 119.99757 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00375 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46945 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47461 * 120.00100 * 8 6 4 11 11 H 1.48501 * 109.47104 * 240.00333 * 8 6 4 12 12 N 1.46905 * 109.47176 * 119.99470 * 2 1 3 13 13 C 1.46905 * 111.00061 * 273.65487 * 12 2 1 14 14 H 1.09003 * 109.47292 * 32.96345 * 13 12 2 15 15 C 1.52994 * 109.46879 * 152.96752 * 13 12 2 16 16 C 1.50697 * 109.46441 * 272.96577 * 13 12 2 17 17 O 1.21276 * 120.00359 * 359.97438 * 16 13 12 18 18 N 1.34779 * 119.99717 * 179.72647 * 16 13 12 19 19 C 1.46497 * 120.00265 * 180.27486 * 18 16 13 20 20 C 1.53003 * 109.47251 * 180.02562 * 19 18 16 21 21 C 1.50705 * 109.47016 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99679 * 269.72150 * 21 20 19 23 23 C 1.38233 * 119.99571 * 179.76404 * 22 21 20 24 24 C 1.38238 * 120.00126 * 0.51744 * 23 22 21 25 25 C 1.38231 * 119.99872 * 359.73639 * 24 23 22 26 26 C 1.38233 * 119.99892 * 90.00016 * 21 20 19 27 27 H 1.08996 * 109.47622 * 294.06083 * 1 2 3 28 28 H 1.09008 * 109.47159 * 54.06160 * 1 2 3 29 29 H 1.08997 * 109.47239 * 174.06031 * 1 2 3 30 30 H 0.97006 * 119.99949 * 180.02562 * 7 6 4 31 31 H 1.00904 * 110.99283 * 37.60283 * 12 2 1 32 32 H 1.09001 * 109.47593 * 295.46004 * 15 13 12 33 33 H 1.09004 * 109.47452 * 55.46355 * 15 13 12 34 34 H 1.09004 * 109.47098 * 175.46273 * 15 13 12 35 35 H 0.97006 * 119.99598 * 0.27261 * 18 16 13 36 36 H 1.08997 * 109.47349 * 300.00133 * 19 18 16 37 37 H 1.08999 * 109.46914 * 59.99865 * 19 18 16 38 38 H 1.09006 * 109.46807 * 300.00066 * 20 19 18 39 39 H 1.08999 * 109.47353 * 60.00035 * 20 19 18 40 40 H 1.08000 * 119.99976 * 0.02562 * 22 21 20 41 41 H 1.08004 * 119.99771 * 180.23026 * 23 22 21 42 42 H 1.07997 * 120.00073 * 179.72696 * 24 23 22 43 43 H 1.08001 * 120.00067 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00476 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8163 12 7 2.0197 -0.6924 1.1995 13 6 2.1127 0.2303 2.3389 14 1 1.3228 0.9778 2.2666 15 6 1.9557 -0.5532 3.6436 16 6 3.4552 0.9148 2.3223 17 8 4.2556 0.6589 1.4480 18 7 3.7643 1.8151 3.2765 19 6 5.0669 2.4851 3.2571 20 6 5.1620 3.4497 4.4410 21 6 6.5019 4.1393 4.4206 22 6 7.5753 3.5840 5.0916 23 6 8.8055 4.2141 5.0688 24 6 8.9595 5.4050 4.3840 25 6 7.8848 5.9629 3.7174 26 6 6.6559 5.3302 3.7357 27 1 -0.3634 0.4190 0.9383 28 1 -0.3634 0.6032 -0.8321 29 1 -0.3633 -1.0221 -0.1063 30 1 0.7090 1.1613 -3.4844 31 1 1.4365 -1.4850 1.4228 32 1 0.9548 -0.9820 3.6918 33 1 2.6957 -1.3528 3.6786 34 1 2.1049 0.1172 4.4901 35 1 3.1241 2.0195 3.9761 36 1 5.8596 1.7406 3.3309 37 1 5.1759 3.0406 2.3256 38 1 4.3693 4.1943 4.3675 39 1 5.0532 2.8938 5.3722 40 1 7.4538 2.6557 5.6301 41 1 9.6451 3.7783 5.5900 42 1 9.9195 5.8995 4.3699 43 1 8.0050 6.8936 3.1827 44 1 5.8162 5.7661 3.2148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:23 Heat of formation + Delta-G solvation = -17.618493 kcal Electronic energy + Delta-G solvation = -22461.590700 eV Core-core repulsion = 19185.389406 eV Total energy + Delta-G solvation = -3276.201294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.66708 -39.11844 -36.10748 -35.05216 -33.14101 -32.48244 -31.08780 -30.54453 -28.41864 -26.79169 -25.01260 -24.42146 -22.78023 -22.59131 -21.18141 -20.31649 -19.54145 -17.01137 -16.53764 -16.15358 -15.87375 -15.73304 -15.22118 -14.89379 -14.56317 -14.06537 -13.87417 -13.60532 -13.55516 -13.15233 -13.02900 -12.88033 -12.29119 -12.20921 -11.92331 -11.88100 -11.59793 -11.42880 -11.28014 -11.25635 -11.05618 -10.83462 -10.66296 -10.42751 -10.04665 -9.74306 -9.22088 -9.12219 -8.92936 -8.80635 -8.70756 -8.25806 -7.20218 -5.87598 -3.87528 1.13194 1.20388 3.31397 3.40354 3.41336 3.47486 3.54633 3.64220 4.54782 4.60572 4.63283 4.80906 4.92676 4.95640 4.99649 5.14199 5.27281 5.31525 5.37648 5.40767 5.40834 5.45195 5.62608 5.77951 5.81950 5.90619 5.92785 6.00358 6.12147 6.25751 6.29582 6.31418 6.42740 6.68325 6.74925 6.80963 6.86204 7.11067 7.36430 7.76364 7.87106 8.00997 8.34187 8.59568 8.68313 8.89584 9.18754 9.76103 11.20746 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.003125 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.937188 B = 8957.481971 C = 9879.278286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.216 3.784 3 H 0.032 0.968 4 C -0.481 4.481 5 H 0.063 0.937 6 C 0.052 3.948 7 N -0.902 5.902 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.286 1.286 12 N -0.662 5.662 13 C 0.069 3.931 14 H 0.061 0.939 15 C -0.147 4.147 16 C 0.512 3.488 17 O -0.497 6.497 18 N -0.746 5.746 19 C 0.128 3.872 20 C -0.091 4.091 21 C -0.078 4.078 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.113 4.113 27 H 0.003 0.997 28 H 0.086 0.914 29 H 0.032 0.968 30 H 0.257 0.743 31 H 0.332 0.668 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.393 0.607 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.348 8.379 19.483 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.109 3.891 3 H 0.050 0.950 4 C -0.520 4.520 5 H 0.081 0.919 6 C -0.148 4.148 7 N -0.543 5.543 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.212 1.212 12 N -0.293 5.293 13 C -0.046 4.046 14 H 0.079 0.921 15 C -0.205 4.205 16 C 0.297 3.703 17 O -0.367 6.367 18 N -0.402 5.402 19 C 0.004 3.996 20 C -0.129 4.129 21 C -0.079 4.079 22 C -0.132 4.132 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.131 4.131 27 H 0.022 0.978 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.227 0.773 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.545 8.328 18.469 22.395 hybrid contribution -0.929 -0.010 -0.370 1.000 sum 8.616 8.318 18.098 21.702 Atomic orbital electron populations 1.22463 1.00723 1.00332 0.99203 1.19189 0.89064 0.94399 0.86474 0.95040 1.21147 1.29345 1.12146 0.89401 0.91870 1.24936 0.95521 0.95299 0.99007 1.69906 1.37962 1.23418 1.23004 0.86446 0.78384 0.79716 0.82891 1.19722 1.21361 1.21236 1.60431 1.57546 1.08884 1.02477 1.21328 0.93477 0.96373 0.93395 0.92140 1.21914 1.02612 1.00667 0.95326 1.20966 0.89819 0.78767 0.80773 1.90734 1.50036 1.61350 1.34620 1.46093 1.17997 1.44841 1.31313 1.21170 0.85927 0.94719 0.97754 1.20801 0.94539 0.98438 0.99111 1.19721 0.95220 0.95229 0.97729 1.21084 0.92688 0.99814 0.99664 1.21147 0.97328 0.95742 0.99584 1.21160 0.98806 0.96254 0.98100 1.21164 0.93065 1.00079 0.99387 1.21121 0.97834 0.95257 0.98935 0.97835 0.89520 0.94929 0.93341 0.84960 0.91872 0.91474 0.92425 0.77347 0.91736 0.91624 0.90283 0.90354 0.85986 0.86109 0.86225 0.86048 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.84 37.16 0.33 -3.73 16 2 C 0.22 5.66 2.28 -68.87 -0.16 5.51 16 3 H 0.03 0.93 7.70 -51.92 -0.40 0.53 16 4 C -0.48 -14.15 8.84 -34.44 -0.30 -14.45 16 5 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.90 11.39 55.43 0.63 -26.27 16 8 Si 0.90 22.73 29.54 -169.99 -5.02 17.71 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 N -0.66 -14.61 5.56 -102.17 -0.57 -15.18 16 13 C 0.07 1.21 2.81 -68.87 -0.19 1.02 16 14 H 0.06 1.06 7.21 -51.93 -0.37 0.69 16 15 C -0.15 -1.88 9.09 37.15 0.34 -1.54 16 16 C 0.51 9.70 7.00 -10.99 -0.08 9.62 16 17 O -0.50 -12.21 16.34 5.56 0.09 -12.11 16 18 N -0.75 -10.17 5.42 -60.30 -0.33 -10.49 16 19 C 0.13 1.64 5.66 -4.04 -0.02 1.62 16 20 C -0.09 -0.83 5.46 -27.88 -0.15 -0.98 16 21 C -0.08 -0.78 5.13 -104.62 -0.54 -1.31 16 22 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 27 H 0.00 0.06 7.51 -51.93 -0.39 -0.33 16 28 H 0.09 2.33 6.25 -51.92 -0.32 2.01 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.33 6.67 8.06 -39.29 -0.32 6.35 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 35 H 0.39 3.96 7.85 -40.82 -0.32 3.64 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -34.94 364.84 -9.65 -44.60 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.12 Total: 6.46 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.83 Total: -10.21 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.26 Total: -51.94 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.94 -9.65 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.977 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds