Wall clock time and date at job start Tue Mar 31 2020 08:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46901 * 2 1 4 4 C 1.50690 * 109.47466 * 239.99568 * 2 1 3 5 5 H 1.07997 * 120.00456 * 240.00145 * 4 2 1 6 6 C 1.37880 * 119.99948 * 60.00025 * 4 2 1 7 7 N 1.31516 * 119.99757 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00375 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46945 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47461 * 120.00100 * 8 6 4 11 11 H 1.48501 * 109.47104 * 240.00333 * 8 6 4 12 12 N 1.46905 * 109.47176 * 119.99470 * 2 1 3 13 13 C 1.46905 * 111.00061 * 273.65487 * 12 2 1 14 14 H 1.09003 * 109.47292 * 32.96345 * 13 12 2 15 15 C 1.52994 * 109.46879 * 152.96752 * 13 12 2 16 16 C 1.50697 * 109.46441 * 272.96577 * 13 12 2 17 17 O 1.21276 * 120.00359 * 359.97438 * 16 13 12 18 18 N 1.34779 * 119.99717 * 179.72647 * 16 13 12 19 19 C 1.46497 * 120.00265 * 180.27486 * 18 16 13 20 20 C 1.53003 * 109.47251 * 180.02562 * 19 18 16 21 21 C 1.50705 * 109.47016 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99679 * 269.72150 * 21 20 19 23 23 C 1.38233 * 119.99571 * 179.76404 * 22 21 20 24 24 C 1.38238 * 120.00126 * 0.51744 * 23 22 21 25 25 C 1.38231 * 119.99872 * 359.73639 * 24 23 22 26 26 C 1.38233 * 119.99892 * 90.00016 * 21 20 19 27 27 H 1.08996 * 109.47622 * 294.06083 * 1 2 3 28 28 H 1.09008 * 109.47159 * 54.06160 * 1 2 3 29 29 H 1.08997 * 109.47239 * 174.06031 * 1 2 3 30 30 H 0.97006 * 119.99949 * 180.02562 * 7 6 4 31 31 H 1.00904 * 110.99283 * 37.60283 * 12 2 1 32 32 H 1.09001 * 109.47593 * 295.46004 * 15 13 12 33 33 H 1.09004 * 109.47452 * 55.46355 * 15 13 12 34 34 H 1.09004 * 109.47098 * 175.46273 * 15 13 12 35 35 H 0.97006 * 119.99598 * 0.27261 * 18 16 13 36 36 H 1.08997 * 109.47349 * 300.00133 * 19 18 16 37 37 H 1.08999 * 109.46914 * 59.99865 * 19 18 16 38 38 H 1.09006 * 109.46807 * 300.00066 * 20 19 18 39 39 H 1.08999 * 109.47353 * 60.00035 * 20 19 18 40 40 H 1.08000 * 119.99976 * 0.02562 * 22 21 20 41 41 H 1.08004 * 119.99771 * 180.23026 * 23 22 21 42 42 H 1.07997 * 120.00073 * 179.72696 * 24 23 22 43 43 H 1.08001 * 120.00067 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00476 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8163 12 7 2.0197 -0.6924 1.1995 13 6 2.1127 0.2303 2.3389 14 1 1.3228 0.9778 2.2666 15 6 1.9557 -0.5532 3.6436 16 6 3.4552 0.9148 2.3223 17 8 4.2556 0.6589 1.4480 18 7 3.7643 1.8151 3.2765 19 6 5.0669 2.4851 3.2571 20 6 5.1620 3.4497 4.4410 21 6 6.5019 4.1393 4.4206 22 6 7.5753 3.5840 5.0916 23 6 8.8055 4.2141 5.0688 24 6 8.9595 5.4050 4.3840 25 6 7.8848 5.9629 3.7174 26 6 6.6559 5.3302 3.7357 27 1 -0.3634 0.4190 0.9383 28 1 -0.3634 0.6032 -0.8321 29 1 -0.3633 -1.0221 -0.1063 30 1 0.7090 1.1613 -3.4844 31 1 1.4365 -1.4850 1.4228 32 1 0.9548 -0.9820 3.6918 33 1 2.6957 -1.3528 3.6786 34 1 2.1049 0.1172 4.4901 35 1 3.1241 2.0195 3.9761 36 1 5.8596 1.7406 3.3309 37 1 5.1759 3.0406 2.3256 38 1 4.3693 4.1943 4.3675 39 1 5.0532 2.8938 5.3722 40 1 7.4538 2.6557 5.6301 41 1 9.6451 3.7783 5.5900 42 1 9.9195 5.8995 4.3699 43 1 8.0050 6.8936 3.1827 44 1 5.8162 5.7661 3.2148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:22 Heat of formation + Delta-G solvation = -41.692189 kcal Electronic energy + Delta-G solvation = -22462.634613 eV Core-core repulsion = 19185.389406 eV Total energy + Delta-G solvation = -3277.245208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85721 -40.09750 -37.76390 -36.33714 -34.96507 -33.65089 -32.23885 -31.76156 -29.44167 -28.38541 -27.19839 -25.51391 -23.76653 -23.46259 -22.29988 -22.00031 -20.92650 -18.44094 -17.94415 -17.50245 -17.19101 -16.85017 -16.60458 -16.03099 -15.90177 -15.55404 -15.29104 -15.02391 -14.49689 -14.22783 -14.12116 -13.91853 -13.82149 -13.67214 -13.25834 -13.16112 -13.02340 -12.83021 -12.75048 -12.46930 -12.32489 -12.30665 -12.10648 -11.96353 -11.79271 -11.73863 -11.07899 -10.64656 -10.48989 -10.03111 -9.80602 -9.63015 -8.94081 -8.09784 -6.18002 0.42367 0.50983 1.38035 1.40163 1.53206 1.83562 2.23536 2.44313 2.89014 3.18788 3.63017 3.85432 3.91099 4.03264 4.12711 4.14510 4.19107 4.22163 4.30708 4.33060 4.57922 4.64364 4.64863 4.74071 4.82680 4.89112 4.93155 4.94759 5.02934 5.07390 5.17695 5.19020 5.26283 5.42436 5.52873 5.59213 5.63611 5.71092 5.71183 5.82217 6.13363 6.27398 6.58230 6.73487 6.88785 6.97092 7.48929 7.50962 8.96600 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.003125 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.937188 B = 8957.481971 C = 9879.278286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.226 3.774 3 H -0.012 1.012 4 C -0.507 4.507 5 H 0.046 0.954 6 C 0.005 3.995 7 N -0.924 5.924 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.285 1.285 12 N -0.677 5.677 13 C 0.066 3.934 14 H 0.067 0.933 15 C -0.136 4.136 16 C 0.506 3.494 17 O -0.566 6.566 18 N -0.721 5.721 19 C 0.131 3.869 20 C -0.076 4.076 21 C -0.095 4.095 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.131 4.131 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.343 0.657 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.415 0.585 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.130 8.350 21.516 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.118 3.882 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.064 0.936 6 C -0.192 4.192 7 N -0.565 5.565 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.310 5.310 13 C -0.048 4.048 14 H 0.085 0.915 15 C -0.194 4.194 16 C 0.292 3.708 17 O -0.443 6.443 18 N -0.377 5.377 19 C 0.007 3.993 20 C -0.113 4.113 21 C -0.095 4.095 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.149 4.149 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.163 0.837 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.295 8.321 20.576 24.063 hybrid contribution -0.793 0.068 -0.937 1.229 sum 8.502 8.389 19.640 22.986 Atomic orbital electron populations 1.22220 0.99090 1.00194 0.99692 1.18837 0.90067 0.91862 0.87446 0.99392 1.21451 1.29629 1.12096 0.91422 0.93589 1.25702 0.95682 0.96044 1.01818 1.70022 1.38469 1.24269 1.23733 0.85503 0.78193 0.78516 0.79380 1.19719 1.19784 1.21077 1.60166 1.57756 1.09996 1.03038 1.21489 0.92733 0.96424 0.94191 0.91535 1.21892 1.03549 1.00574 0.93388 1.21350 0.89770 0.79065 0.80581 1.90705 1.52098 1.63937 1.37530 1.45841 1.18691 1.42815 1.30308 1.21174 0.84944 0.94757 0.98448 1.20700 0.94759 0.97847 0.98026 1.19869 0.95782 0.95531 0.98344 1.21351 0.92839 1.00378 0.99749 1.21477 0.97846 0.95811 0.99543 1.21490 0.99575 0.96361 0.97573 1.21445 0.93058 1.00782 0.99647 1.21338 0.98477 0.95765 0.99339 0.94536 0.92445 0.94479 0.93128 0.83738 0.89981 0.92199 0.88711 0.74753 0.93010 0.94409 0.89014 0.88001 0.84668 0.84150 0.84230 0.84631 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.34 8.84 71.98 0.64 -6.71 16 2 C 0.23 12.13 2.28 44.16 0.10 12.23 16 3 H -0.01 -0.73 7.70 -2.38 -0.02 -0.75 16 4 C -0.51 -30.62 8.84 25.60 0.23 -30.40 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.00 0.29 5.30 84.66 0.45 0.74 16 7 N -0.92 -56.10 11.39 21.45 0.24 -55.85 16 8 Si 0.96 47.31 29.54 68.60 2.03 49.34 16 9 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 12 N -0.68 -30.03 5.56 -477.16 -2.65 -32.68 16 13 C 0.07 2.25 2.81 44.17 0.12 2.37 16 14 H 0.07 2.22 7.21 -2.39 -0.02 2.21 16 15 C -0.14 -3.04 9.09 71.98 0.65 -2.39 16 16 C 0.51 19.27 7.00 87.66 0.61 19.88 16 17 O -0.57 -29.04 16.34 -3.02 -0.05 -29.09 16 18 N -0.72 -18.84 5.42 -463.07 -2.51 -21.36 16 19 C 0.13 3.34 5.66 86.38 0.49 3.83 16 20 C -0.08 -1.25 5.46 29.85 0.16 -1.08 16 21 C -0.09 -1.79 5.13 -19.86 -0.10 -1.89 16 22 C -0.13 -2.19 9.70 22.27 0.22 -1.98 16 23 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 24 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 25 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 26 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 27 H 0.04 1.47 7.51 -2.39 -0.02 1.45 16 28 H 0.06 3.11 6.25 -2.38 -0.01 3.09 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 31 H 0.34 13.53 8.06 -89.69 -0.72 12.81 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.09 1.42 7.45 -2.39 -0.02 1.40 16 35 H 0.42 7.16 7.85 -92.70 -0.73 6.43 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 39 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 40 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -79.68 364.84 1.05 -78.63 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.46 Total: 24.61 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 4.46 Total: -13.60 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -4.92 Total: -109.89 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.05 Total: -29.09 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -79.68 1.05 -78.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.938 kcal (2) G-P(sol) polarization free energy of solvation -79.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds