Wall clock time and date at job start Tue Mar 31 2020 08:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47391 * 2 1 4 4 C 1.50702 * 109.47278 * 120.00024 * 2 1 3 5 5 H 1.07994 * 120.00336 * 120.00188 * 4 2 1 6 6 C 1.37883 * 120.00033 * 299.99854 * 4 2 1 7 7 N 1.31510 * 120.00287 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99755 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47145 * 89.99980 * 8 6 4 10 10 H 1.48497 * 109.47014 * 210.00180 * 8 6 4 11 11 H 1.48499 * 109.47306 * 329.99506 * 8 6 4 12 12 N 1.46896 * 109.47124 * 239.99810 * 2 1 3 13 13 C 1.46907 * 111.00009 * 84.99913 * 12 2 1 14 14 C 1.50700 * 109.47275 * 180.02562 * 13 12 2 15 15 O 1.21276 * 119.99660 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99663 * 180.02562 * 14 13 12 17 17 C 1.46492 * 120.00397 * 0.02562 * 16 14 13 18 18 C 1.46508 * 119.99617 * 180.02562 * 16 14 13 19 19 H 1.09000 * 109.46733 * 20.73988 * 18 16 14 20 20 C 1.52992 * 109.46853 * 140.74336 * 18 16 14 21 21 C 1.50703 * 109.46757 * 260.74399 * 18 16 14 22 22 C 1.38238 * 120.00039 * 335.59523 * 21 18 16 23 23 C 1.38241 * 119.99608 * 179.79112 * 22 21 18 24 24 C 1.38238 * 120.00046 * 0.44060 * 23 22 21 25 25 C 1.38234 * 119.99749 * 359.81306 * 24 23 22 26 26 C 1.38234 * 119.99647 * 155.86996 * 21 18 16 27 27 H 1.08992 * 109.47489 * 59.99828 * 1 2 3 28 28 H 1.08993 * 109.47350 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46662 * 299.99800 * 1 2 3 30 30 H 0.96999 * 120.00312 * 180.02562 * 7 6 4 31 31 H 1.00898 * 110.99919 * 321.04985 * 12 2 1 32 32 H 1.09005 * 109.46688 * 59.99981 * 13 12 2 33 33 H 1.09002 * 109.47000 * 300.00530 * 13 12 2 34 34 H 1.09008 * 109.46976 * 264.43793 * 17 16 14 35 35 H 1.09005 * 109.47502 * 144.44450 * 17 16 14 36 36 H 1.09002 * 109.47521 * 24.43651 * 17 16 14 37 37 H 1.09005 * 109.47452 * 60.00613 * 20 18 16 38 38 H 1.09006 * 109.46941 * 179.97438 * 20 18 16 39 39 H 1.08995 * 109.47328 * 299.99785 * 20 18 16 40 40 H 1.07994 * 120.00262 * 0.02562 * 22 21 18 41 41 H 1.07998 * 119.99430 * 180.27461 * 23 22 21 42 42 H 1.07998 * 119.99636 * 179.83174 * 24 23 22 43 43 H 1.07998 * 119.99853 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00653 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8726 2.6999 10 1 0.9760 1.9951 3.9067 11 1 0.8470 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5873 -0.5218 -3.5561 15 8 2.8668 -1.6988 -3.4704 16 7 2.7281 0.1205 -4.7325 17 6 2.3910 1.5423 -4.8357 18 6 3.2184 -0.6034 -5.9081 19 1 3.0677 -1.6734 -5.7648 20 6 2.4505 -0.1416 -7.1481 21 6 4.6875 -0.3234 -6.0937 22 6 5.2399 0.8367 -5.5838 23 6 6.5884 1.0914 -5.7504 24 6 7.3826 0.1904 -6.4348 25 6 6.8291 -0.9671 -6.9492 26 6 5.4815 -1.2239 -6.7789 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.9035 -0.5278 4.4376 31 1 1.4495 -1.4979 -1.4100 32 1 2.7588 1.0462 -2.1182 33 1 1.0870 0.6163 -2.5525 34 1 1.3716 1.6480 -5.2071 35 1 3.0809 2.0303 -5.5244 36 1 2.4696 2.0068 -3.8527 37 1 2.6012 0.9284 -7.2914 38 1 2.8156 -0.6798 -8.0229 39 1 1.3879 -0.3441 -7.0138 40 1 4.6188 1.5422 -5.0520 41 1 7.0208 1.9956 -5.3481 42 1 8.4355 0.3908 -6.5672 43 1 7.4495 -1.6708 -7.4842 44 1 5.0492 -2.1284 -7.1808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:55 Heat of formation + Delta-G solvation = 10.982605 kcal Electronic energy + Delta-G solvation = -23170.337784 eV Core-core repulsion = 19895.376727 eV Total energy + Delta-G solvation = -3274.961057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41000 -38.90047 -36.41620 -35.71085 -32.87944 -32.21485 -30.97139 -29.97400 -29.35095 -27.24145 -25.81037 -24.94736 -23.40990 -22.67287 -21.05253 -20.23325 -19.09112 -17.24675 -17.06173 -16.72957 -16.03693 -15.68652 -15.22613 -14.83317 -14.70132 -14.24599 -13.94545 -13.72433 -13.54905 -13.37555 -13.06555 -12.76635 -12.62521 -12.51005 -12.44350 -12.29388 -12.24868 -11.82203 -11.64020 -11.52728 -11.08547 -11.04639 -11.00454 -10.56241 -10.13008 -9.62094 -9.44691 -9.11548 -9.03495 -8.84726 -8.70171 -8.55265 -7.43625 -6.01564 -3.99106 1.22687 1.29415 2.85316 2.93252 3.25693 3.33487 3.38361 3.67075 4.41194 4.49021 4.66741 4.77021 4.86516 4.88576 4.98695 5.03260 5.05205 5.15692 5.25169 5.27635 5.30864 5.39587 5.46187 5.54335 5.64991 5.71931 5.73693 5.78118 5.88480 5.94861 6.15467 6.25593 6.32795 6.34492 6.39950 6.47463 6.60867 6.68328 6.88119 7.08928 7.35756 7.69690 7.88763 8.27602 8.42719 8.71582 9.12432 9.60074 11.12116 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.003466 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.125254 B = 8076.209208 C = 8462.391382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.185 3.815 3 H 0.034 0.966 4 C -0.498 4.498 5 H 0.083 0.917 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.656 5.656 13 C 0.043 3.957 14 C 0.516 3.484 15 O -0.516 6.516 16 N -0.619 5.619 17 C 0.070 3.930 18 C 0.179 3.821 19 H 0.105 0.895 20 C -0.153 4.153 21 C -0.089 4.089 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.112 4.112 27 H 0.025 0.975 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.341 0.659 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 6.816 -24.819 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.076 3.924 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.101 0.899 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.287 5.287 13 C -0.090 4.090 14 C 0.304 3.696 15 O -0.390 6.390 16 N -0.355 5.355 17 C -0.073 4.073 18 C 0.075 3.925 19 H 0.123 0.877 20 C -0.210 4.210 21 C -0.090 4.090 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.130 4.130 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.799 6.245 -24.378 25.450 hybrid contribution -1.529 1.089 0.057 1.878 sum 2.269 7.333 -24.322 25.504 Atomic orbital electron populations 1.22883 1.01458 1.01115 0.98839 1.19681 0.88551 0.95043 0.89154 0.94811 1.20981 1.31181 1.13859 0.87584 0.89856 1.24945 0.96029 0.96630 0.95837 1.69884 1.45854 1.40332 0.97814 0.86888 0.80597 0.83917 0.76837 1.20786 1.22419 1.19546 1.60374 1.58895 1.08096 1.01371 1.21882 0.99820 0.96888 0.90409 1.20999 0.77224 0.87720 0.83652 1.90688 1.48527 1.16097 1.83685 1.47945 1.67185 1.10709 1.09708 1.21949 1.00702 0.81303 1.03387 1.19835 0.88932 0.98490 0.85245 0.87725 1.22077 1.00359 1.02096 0.96503 1.20255 0.95852 0.94915 0.98010 1.21236 0.95341 0.97253 0.99457 1.21167 0.93952 0.99614 0.98977 1.21144 0.99706 0.94773 0.98699 1.21102 0.95052 0.97365 1.00209 1.20944 0.93838 0.98941 0.99309 0.95580 0.92529 0.93501 0.92688 0.84026 0.88694 0.93458 0.92438 0.90884 0.90318 0.91938 0.91181 0.91667 0.85547 0.86152 0.86286 0.86137 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 8.64 37.16 0.32 -3.60 16 2 C 0.18 4.36 2.16 -68.87 -0.15 4.21 16 3 H 0.03 0.81 6.86 -51.93 -0.36 0.45 16 4 C -0.50 -14.34 9.42 -34.44 -0.32 -14.67 16 5 H 0.08 2.69 8.06 -52.49 -0.42 2.26 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 8 Si 0.89 21.82 24.37 -169.99 -4.14 17.67 16 9 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 12 N -0.66 -14.10 5.86 -109.21 -0.64 -14.74 16 13 C 0.04 0.71 4.44 -4.97 -0.02 0.69 16 14 C 0.52 8.43 7.71 -10.99 -0.08 8.34 16 15 O -0.52 -10.54 15.65 5.56 0.09 -10.46 16 16 N -0.62 -7.49 2.31 -175.26 -0.40 -7.89 16 17 C 0.07 0.59 7.83 59.84 0.47 1.06 16 18 C 0.18 2.00 2.78 -69.08 -0.19 1.81 16 19 H 0.10 1.37 7.15 -51.93 -0.37 1.00 16 20 C -0.15 -1.21 8.79 37.15 0.33 -0.89 16 21 C -0.09 -1.03 5.06 -104.62 -0.53 -1.56 16 22 C -0.11 -1.29 8.87 -39.58 -0.35 -1.64 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.11 -1.20 9.73 -39.58 -0.38 -1.58 16 27 H 0.03 0.46 7.45 -51.93 -0.39 0.07 16 28 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 29 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.34 7.31 8.17 -39.29 -0.32 6.99 16 32 H 0.10 1.49 7.33 -51.93 -0.38 1.11 16 33 H 0.05 0.69 7.40 -51.93 -0.38 0.31 16 34 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.07 0.51 5.59 -51.93 -0.29 0.22 16 36 H 0.08 0.65 6.24 -51.93 -0.32 0.33 16 37 H 0.06 0.44 6.99 -51.93 -0.36 0.08 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.13 1.29 4.72 -52.49 -0.25 1.05 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -34.27 346.01 -7.90 -42.17 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.58 Total: 6.08 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.21 Total: -10.84 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.27 Total: -49.84 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.27 -7.90 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.155 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds