Wall clock time and date at job start Tue Mar 31 2020 08:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47391 * 2 1 4 4 C 1.50702 * 109.47278 * 120.00024 * 2 1 3 5 5 H 1.07994 * 120.00336 * 120.00188 * 4 2 1 6 6 C 1.37883 * 120.00033 * 299.99854 * 4 2 1 7 7 N 1.31510 * 120.00287 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99755 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47145 * 89.99980 * 8 6 4 10 10 H 1.48497 * 109.47014 * 210.00180 * 8 6 4 11 11 H 1.48499 * 109.47306 * 329.99506 * 8 6 4 12 12 N 1.46896 * 109.47124 * 239.99810 * 2 1 3 13 13 C 1.46907 * 111.00009 * 84.99913 * 12 2 1 14 14 C 1.50700 * 109.47275 * 180.02562 * 13 12 2 15 15 O 1.21276 * 119.99660 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99663 * 180.02562 * 14 13 12 17 17 C 1.46492 * 120.00397 * 0.02562 * 16 14 13 18 18 C 1.46508 * 119.99617 * 180.02562 * 16 14 13 19 19 H 1.09000 * 109.46733 * 20.73988 * 18 16 14 20 20 C 1.52992 * 109.46853 * 140.74336 * 18 16 14 21 21 C 1.50703 * 109.46757 * 260.74399 * 18 16 14 22 22 C 1.38238 * 120.00039 * 335.59523 * 21 18 16 23 23 C 1.38241 * 119.99608 * 179.79112 * 22 21 18 24 24 C 1.38238 * 120.00046 * 0.44060 * 23 22 21 25 25 C 1.38234 * 119.99749 * 359.81306 * 24 23 22 26 26 C 1.38234 * 119.99647 * 155.86996 * 21 18 16 27 27 H 1.08992 * 109.47489 * 59.99828 * 1 2 3 28 28 H 1.08993 * 109.47350 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46662 * 299.99800 * 1 2 3 30 30 H 0.96999 * 120.00312 * 180.02562 * 7 6 4 31 31 H 1.00898 * 110.99919 * 321.04985 * 12 2 1 32 32 H 1.09005 * 109.46688 * 59.99981 * 13 12 2 33 33 H 1.09002 * 109.47000 * 300.00530 * 13 12 2 34 34 H 1.09008 * 109.46976 * 264.43793 * 17 16 14 35 35 H 1.09005 * 109.47502 * 144.44450 * 17 16 14 36 36 H 1.09002 * 109.47521 * 24.43651 * 17 16 14 37 37 H 1.09005 * 109.47452 * 60.00613 * 20 18 16 38 38 H 1.09006 * 109.46941 * 179.97438 * 20 18 16 39 39 H 1.08995 * 109.47328 * 299.99785 * 20 18 16 40 40 H 1.07994 * 120.00262 * 0.02562 * 22 21 18 41 41 H 1.07998 * 119.99430 * 180.27461 * 23 22 21 42 42 H 1.07998 * 119.99636 * 179.83174 * 24 23 22 43 43 H 1.07998 * 119.99853 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00653 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8726 2.6999 10 1 0.9760 1.9951 3.9067 11 1 0.8470 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5873 -0.5218 -3.5561 15 8 2.8668 -1.6988 -3.4704 16 7 2.7281 0.1205 -4.7325 17 6 2.3910 1.5423 -4.8357 18 6 3.2184 -0.6034 -5.9081 19 1 3.0677 -1.6734 -5.7648 20 6 2.4505 -0.1416 -7.1481 21 6 4.6875 -0.3234 -6.0937 22 6 5.2399 0.8367 -5.5838 23 6 6.5884 1.0914 -5.7504 24 6 7.3826 0.1904 -6.4348 25 6 6.8291 -0.9671 -6.9492 26 6 5.4815 -1.2239 -6.7789 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.9035 -0.5278 4.4376 31 1 1.4495 -1.4979 -1.4100 32 1 2.7588 1.0462 -2.1182 33 1 1.0870 0.6163 -2.5525 34 1 1.3716 1.6480 -5.2071 35 1 3.0809 2.0303 -5.5244 36 1 2.4696 2.0068 -3.8527 37 1 2.6012 0.9284 -7.2914 38 1 2.8156 -0.6798 -8.0229 39 1 1.3879 -0.3441 -7.0138 40 1 4.6188 1.5422 -5.0520 41 1 7.0208 1.9956 -5.3481 42 1 8.4355 0.3908 -6.5672 43 1 7.4495 -1.6708 -7.4842 44 1 5.0492 -2.1284 -7.1808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:54 Heat of formation + Delta-G solvation = -12.788989 kcal Electronic energy + Delta-G solvation = -23171.368598 eV Core-core repulsion = 19895.376727 eV Total energy + Delta-G solvation = -3275.991871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41979 -39.88830 -37.84862 -37.00956 -34.54692 -33.55323 -31.81798 -31.50680 -30.19134 -28.04457 -27.29416 -26.87443 -24.28731 -23.45927 -22.22972 -21.84576 -20.16182 -18.84464 -18.12114 -18.03370 -17.30173 -16.74568 -16.61884 -16.09742 -15.90588 -15.30210 -15.21886 -14.96262 -14.65658 -14.41744 -14.34054 -14.07456 -14.02845 -13.61712 -13.52090 -13.21106 -13.13096 -13.02252 -12.97564 -12.78631 -12.49408 -12.38833 -11.98110 -11.87142 -11.80781 -11.45340 -11.27231 -10.76845 -10.70872 -9.84494 -9.71592 -9.59434 -9.05274 -8.24987 -6.29216 0.42981 0.50216 1.32669 1.38292 1.49612 1.62921 1.92889 2.34845 2.87541 3.08581 3.45631 3.66356 3.74970 3.99741 4.11134 4.18296 4.24034 4.28693 4.31827 4.36140 4.37725 4.52639 4.57571 4.61066 4.66011 4.67732 4.68999 4.77416 4.92351 4.96121 4.97616 5.08446 5.14179 5.23490 5.39210 5.47389 5.57233 5.62441 5.65917 5.74850 5.97254 6.11823 6.32151 6.62959 6.69452 6.78375 7.21885 7.35669 8.93186 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.003466 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.125254 B = 8076.209208 C = 8462.391382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.191 3.809 3 H 0.042 0.958 4 C -0.511 4.511 5 H 0.024 0.976 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.961 3.039 9 H -0.266 1.266 10 H -0.300 1.300 11 H -0.238 1.238 12 N -0.682 5.682 13 C 0.045 3.955 14 C 0.513 3.487 15 O -0.572 6.572 16 N -0.607 5.607 17 C 0.059 3.941 18 C 0.177 3.823 19 H 0.077 0.923 20 C -0.143 4.143 21 C -0.105 4.105 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.128 4.128 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.337 0.663 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 9.969 -27.108 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.082 3.918 3 H 0.060 0.940 4 C -0.550 4.550 5 H 0.043 0.957 6 C -0.192 4.192 7 N -0.596 5.596 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.228 1.228 11 H -0.162 1.162 12 N -0.313 5.313 13 C -0.087 4.087 14 C 0.302 3.698 15 O -0.450 6.450 16 N -0.341 5.341 17 C -0.082 4.082 18 C 0.073 3.927 19 H 0.095 0.905 20 C -0.200 4.200 21 C -0.106 4.106 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.146 4.146 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.584 9.443 -26.743 28.478 hybrid contribution -1.013 0.024 0.684 1.223 sum 1.571 9.467 -26.059 27.770 Atomic orbital electron populations 1.22733 0.99039 1.01379 1.00537 1.19445 0.90257 0.94355 0.87753 0.94020 1.21294 1.30495 1.12548 0.90621 0.95714 1.25942 0.97663 1.00588 0.95041 1.70075 1.48021 1.42863 0.98626 0.85691 0.78635 0.79368 0.77636 1.19253 1.22764 1.16161 1.60146 1.59282 1.09122 1.02770 1.21943 1.01902 0.96031 0.88785 1.21009 0.76994 0.87077 0.84769 1.90670 1.51291 1.18352 1.84686 1.47941 1.65418 1.12119 1.08575 1.22274 1.02567 0.78835 1.04539 1.19903 0.89619 0.97105 0.86039 0.90477 1.22022 0.99958 1.03036 0.95020 1.20372 0.96014 0.95483 0.98711 1.21431 0.96037 0.97505 0.99889 1.21472 0.93877 1.00458 0.98968 1.21485 1.00859 0.94543 0.98170 1.21421 0.95005 0.97885 1.00088 1.21190 0.94467 0.99305 0.99654 0.91250 0.93221 0.94116 0.92578 0.84498 0.87513 0.90135 0.90129 0.89029 0.89674 0.90452 0.90200 0.91305 0.84770 0.84472 0.84172 0.84135 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.05 8.64 71.98 0.62 -6.43 16 2 C 0.19 8.81 2.16 44.17 0.10 8.91 16 3 H 0.04 1.87 6.86 -2.38 -0.02 1.85 16 4 C -0.51 -30.37 9.42 25.60 0.24 -30.13 16 5 H 0.02 1.70 8.06 -2.91 -0.02 1.67 16 6 C 0.00 0.23 5.45 84.66 0.46 0.69 16 7 N -0.96 -61.49 13.96 21.45 0.30 -61.20 16 8 Si 0.96 44.19 24.37 68.60 1.67 45.86 16 9 H -0.27 -11.60 6.87 99.48 0.68 -10.92 16 10 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.24 -9.67 6.53 99.48 0.65 -9.02 16 12 N -0.68 -29.20 5.86 -499.44 -2.93 -32.13 16 13 C 0.05 1.41 4.44 85.56 0.38 1.79 16 14 C 0.51 16.42 7.71 87.66 0.68 17.09 16 15 O -0.57 -24.08 15.65 -3.02 -0.05 -24.13 16 16 N -0.61 -13.64 2.31 -826.80 -1.91 -15.55 16 17 C 0.06 0.79 7.83 127.77 1.00 1.79 16 18 C 0.18 3.81 2.78 44.24 0.12 3.93 16 19 H 0.08 2.09 7.15 -2.39 -0.02 2.08 16 20 C -0.14 -1.96 8.79 71.98 0.63 -1.33 16 21 C -0.10 -2.33 5.06 -19.86 -0.10 -2.43 16 22 C -0.13 -2.76 8.87 22.27 0.20 -2.56 16 23 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 24 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 25 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 26 C -0.13 -2.68 9.73 22.27 0.22 -2.46 16 27 H 0.07 2.14 7.45 -2.39 -0.02 2.13 16 28 H 0.05 2.00 8.13 -2.39 -0.02 1.99 16 29 H 0.04 1.66 3.27 -2.39 -0.01 1.65 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.34 14.68 8.17 -89.70 -0.73 13.95 16 32 H 0.11 3.06 7.33 -2.38 -0.02 3.04 16 33 H 0.08 2.00 7.40 -2.39 -0.02 1.98 16 34 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.09 0.93 5.59 -2.38 -0.01 0.92 16 36 H 0.08 1.07 6.24 -2.39 -0.01 1.05 16 37 H 0.08 0.84 6.99 -2.38 -0.02 0.83 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.13 2.47 4.72 -2.91 -0.01 2.45 16 41 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -79.05 346.01 2.50 -76.55 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.19 Total: 28.32 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.22 Total: -17.73 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -4.53 Total: -108.87 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.86 kcal Total: -79.05 2.50 -76.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.761 kcal (2) G-P(sol) polarization free energy of solvation -79.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds