Wall clock time and date at job start Tue Mar 31 2020 08:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.52993 * 109.46779 * 179.97438 * 13 12 2 15 15 H 1.08997 * 109.51145 * 305.08307 * 14 13 12 16 16 C 1.53101 * 109.50722 * 184.99801 * 14 13 12 17 17 N 1.47011 * 109.26331 * 183.21965 * 16 14 13 18 18 C 1.39667 * 111.00382 * 182.39388 * 17 16 14 19 19 C 1.38914 * 120.07111 * 359.72002 * 18 17 16 20 20 C 1.38106 * 119.92332 * 179.77171 * 19 18 17 21 21 C 1.38294 * 120.07318 * 0.50543 * 20 19 18 22 22 C 1.38285 * 120.14894 * 359.74655 * 21 20 19 23 23 C 1.38099 * 120.07269 * 0.02562 * 22 21 20 24 24 C 1.47009 * 110.75266 * 58.61475 * 17 16 14 25 25 C 1.53104 * 109.25708 * 301.38508 * 24 17 16 26 26 O 1.43017 * 109.25896 * 56.85379 * 25 24 17 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 31 31 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 32 32 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 33 33 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 34 34 H 1.09003 * 109.50427 * 303.15161 * 16 14 13 35 35 H 1.09001 * 109.50653 * 63.23507 * 16 14 13 36 36 H 1.08002 * 120.03997 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.96413 * 180.25393 * 20 19 18 38 38 H 1.08002 * 119.92149 * 179.76753 * 21 20 19 39 39 H 1.08000 * 119.95795 * 180.02562 * 22 21 20 40 40 H 1.08009 * 120.03369 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.51097 * 61.31919 * 24 17 16 42 42 H 1.09001 * 109.50548 * 181.45266 * 24 17 16 43 43 H 1.09001 * 109.50120 * 176.78569 * 25 24 17 44 44 H 1.08998 * 109.50822 * 296.91117 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5962 -0.5330 -3.5741 15 1 3.5513 -1.0027 -3.3390 16 6 2.7805 0.4458 -4.7369 17 7 3.2000 -0.2970 -5.9342 18 6 3.4313 0.5692 -7.0052 19 6 3.2499 1.9371 -6.8457 20 6 3.4840 2.7913 -7.9054 21 6 3.8884 2.2851 -9.1272 22 6 4.0649 0.9234 -9.2908 23 6 3.8371 0.0642 -8.2339 24 6 2.2045 -1.3189 -6.2886 25 6 2.0260 -2.2801 -5.1103 26 8 1.6486 -1.5368 -3.9482 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7082 1.1609 3.4844 31 1 1.4496 -1.4980 -1.4101 32 1 1.0871 0.6162 -2.5525 33 1 2.7589 1.0461 -2.1182 34 1 1.8379 0.9554 -4.9365 35 1 3.5433 1.1799 -4.4773 36 1 2.9301 2.3327 -5.8930 37 1 3.3471 3.8553 -7.7810 38 1 4.0672 2.9550 -9.9553 39 1 4.3812 0.5315 -10.2462 40 1 3.9755 -0.9993 -8.3623 41 1 1.2527 -0.8376 -6.5130 42 1 2.5474 -1.8736 -7.1620 43 1 1.2476 -3.0054 -5.3470 44 1 2.9643 -2.8012 -4.9203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:01 Heat of formation + Delta-G solvation = -5.297735 kcal Electronic energy + Delta-G solvation = -22982.391494 eV Core-core repulsion = 19706.724469 eV Total energy + Delta-G solvation = -3275.667026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65234 -38.68651 -36.13753 -35.45160 -33.02210 -31.68712 -30.86066 -30.27375 -28.47093 -26.69872 -25.16918 -24.84054 -22.91533 -22.22937 -21.21360 -20.42608 -20.01557 -17.86826 -16.40468 -16.38401 -15.97881 -15.72029 -15.55122 -14.94706 -14.76271 -14.50544 -14.21462 -13.94677 -13.69068 -13.53864 -13.20935 -12.79582 -12.72900 -12.22546 -11.87016 -11.67357 -11.60904 -11.38901 -11.26560 -11.03311 -10.89657 -10.79562 -10.48446 -10.41823 -10.13956 -10.08190 -9.78494 -9.40277 -9.15055 -8.94096 -8.32932 -8.06131 -7.18340 -5.94904 -3.97717 1.16744 1.19264 3.33675 3.34354 3.41858 3.47774 3.67851 3.83003 4.46696 4.56849 4.69370 4.74298 4.78125 4.91377 4.96478 5.07198 5.16406 5.22437 5.31803 5.36630 5.37111 5.42370 5.51233 5.62088 5.68351 5.74093 5.80781 5.93662 6.04283 6.18783 6.22726 6.34565 6.35640 6.54016 6.73926 6.75477 6.90802 7.06944 7.15127 7.28302 7.40792 7.79379 7.93165 8.31700 8.61013 8.67047 9.10159 9.67566 11.12297 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030877 B = 0.002911 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.613131 B = 9615.945006 C =10022.699239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.681 5.681 13 C 0.070 3.930 14 C 0.096 3.904 15 H 0.077 0.923 16 C 0.021 3.979 17 N -0.488 5.488 18 C 0.114 3.886 19 C -0.170 4.170 20 C -0.093 4.093 21 C -0.151 4.151 22 C -0.097 4.097 23 C -0.142 4.142 24 C 0.022 3.978 25 C 0.063 3.937 26 O -0.374 6.374 27 H 0.004 0.996 28 H 0.088 0.912 29 H 0.028 0.972 30 H 0.258 0.742 31 H 0.334 0.666 32 H 0.026 0.974 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.433 0.118 -23.538 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.311 5.311 13 C -0.060 4.060 14 C 0.038 3.962 15 H 0.095 0.905 16 C -0.106 4.106 17 N -0.203 5.203 18 C 0.017 3.983 19 C -0.191 4.191 20 C -0.112 4.112 21 C -0.170 4.170 22 C -0.116 4.116 23 C -0.162 4.162 24 C -0.103 4.103 25 C -0.014 4.014 26 O -0.293 6.293 27 H 0.023 0.977 28 H 0.107 0.893 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.269 -0.029 -22.936 23.330 hybrid contribution -1.052 0.221 0.278 1.110 sum 3.218 0.192 -22.658 22.886 Atomic orbital electron populations 1.22418 1.00693 0.99269 1.00361 1.19180 0.89648 0.94331 0.86554 0.95002 1.21210 1.29969 1.12346 0.89581 0.91876 1.24959 0.95396 0.95243 0.99055 1.69897 1.37477 1.23327 1.23165 0.86454 0.78488 0.79663 0.82862 1.19725 1.21183 1.21245 1.60802 1.58355 1.09095 1.02894 1.21851 0.99134 0.95510 0.89531 1.22376 0.93419 0.88008 0.92404 0.90510 1.23007 1.00621 0.97108 0.89915 1.59266 1.43042 1.14333 1.03676 1.19023 0.97379 0.91295 0.90634 1.21409 1.04439 0.92889 1.00365 1.21033 0.97844 0.99510 0.92812 1.21071 1.02855 0.95423 0.97610 1.20997 0.98818 0.93434 0.98352 1.20779 1.03346 1.00043 0.92039 1.22955 0.93510 0.94029 0.99841 1.22632 1.01358 0.93069 0.84353 1.88050 1.46546 1.49914 1.44777 0.97662 0.89340 0.95297 0.93183 0.84931 0.95582 0.90346 0.92723 0.88819 0.85362 0.86033 0.86296 0.86014 0.85873 0.93047 0.89270 0.88250 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 2 C 0.21 5.38 2.57 -68.86 -0.18 5.20 16 3 H 0.03 0.88 7.80 -51.93 -0.40 0.48 16 4 C -0.49 -13.84 8.84 -34.44 -0.30 -14.15 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.99 11.32 55.43 0.63 -25.37 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 N -0.68 -14.86 6.23 -107.95 -0.67 -15.54 16 13 C 0.07 1.27 5.19 -3.82 -0.02 1.25 16 14 C 0.10 1.46 3.04 -26.68 -0.08 1.38 16 15 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 16 C 0.02 0.27 3.61 -3.71 -0.01 0.26 16 17 N -0.49 -5.86 4.77 -170.81 -0.82 -6.68 16 18 C 0.11 1.31 5.63 -83.79 -0.47 0.84 16 19 C -0.17 -1.87 8.82 -39.38 -0.35 -2.22 16 20 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 21 C -0.15 -1.32 10.04 -39.54 -0.40 -1.72 16 22 C -0.10 -0.86 10.04 -39.62 -0.40 -1.25 16 23 C -0.14 -1.42 9.20 -39.38 -0.36 -1.78 16 24 C 0.02 0.23 5.41 -3.71 -0.02 0.21 16 25 C 0.06 0.72 7.01 37.21 0.26 0.98 16 26 O -0.37 -5.72 10.00 -35.23 -0.35 -6.08 16 27 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.03 0.69 8.13 -51.93 -0.42 0.26 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.33 7.22 8.04 -39.29 -0.32 6.91 16 32 H 0.03 0.48 7.44 -51.93 -0.39 0.10 16 33 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 34 H 0.05 0.70 7.52 -51.93 -0.39 0.31 16 35 H 0.09 1.14 7.24 -51.93 -0.38 0.76 16 36 H 0.13 1.35 5.81 -52.49 -0.31 1.05 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.12 1.07 7.20 -52.48 -0.38 0.69 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.76 6.86 -51.93 -0.36 0.41 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -30.20 347.36 -10.45 -40.65 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.96 Total: 5.74 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.49 Total: -14.69 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.86 Total: -47.58 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.35 Total: -6.08 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.20 -10.45 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.356 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds