Wall clock time and date at job start Tue Mar 31 2020 08:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.52993 * 109.46779 * 179.97438 * 13 12 2 15 15 H 1.08997 * 109.51145 * 305.08307 * 14 13 12 16 16 C 1.53101 * 109.50722 * 184.99801 * 14 13 12 17 17 N 1.47011 * 109.26331 * 183.21965 * 16 14 13 18 18 C 1.39667 * 111.00382 * 182.39388 * 17 16 14 19 19 C 1.38914 * 120.07111 * 359.72002 * 18 17 16 20 20 C 1.38106 * 119.92332 * 179.77171 * 19 18 17 21 21 C 1.38294 * 120.07318 * 0.50543 * 20 19 18 22 22 C 1.38285 * 120.14894 * 359.74655 * 21 20 19 23 23 C 1.38099 * 120.07269 * 0.02562 * 22 21 20 24 24 C 1.47009 * 110.75266 * 58.61475 * 17 16 14 25 25 C 1.53104 * 109.25708 * 301.38508 * 24 17 16 26 26 O 1.43017 * 109.25896 * 56.85379 * 25 24 17 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 31 31 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 32 32 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 33 33 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 34 34 H 1.09003 * 109.50427 * 303.15161 * 16 14 13 35 35 H 1.09001 * 109.50653 * 63.23507 * 16 14 13 36 36 H 1.08002 * 120.03997 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.96413 * 180.25393 * 20 19 18 38 38 H 1.08002 * 119.92149 * 179.76753 * 21 20 19 39 39 H 1.08000 * 119.95795 * 180.02562 * 22 21 20 40 40 H 1.08009 * 120.03369 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.51097 * 61.31919 * 24 17 16 42 42 H 1.09001 * 109.50548 * 181.45266 * 24 17 16 43 43 H 1.09001 * 109.50120 * 176.78569 * 25 24 17 44 44 H 1.08998 * 109.50822 * 296.91117 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5962 -0.5330 -3.5741 15 1 3.5513 -1.0027 -3.3390 16 6 2.7805 0.4458 -4.7369 17 7 3.2000 -0.2970 -5.9342 18 6 3.4313 0.5692 -7.0052 19 6 3.2499 1.9371 -6.8457 20 6 3.4840 2.7913 -7.9054 21 6 3.8884 2.2851 -9.1272 22 6 4.0649 0.9234 -9.2908 23 6 3.8371 0.0642 -8.2339 24 6 2.2045 -1.3189 -6.2886 25 6 2.0260 -2.2801 -5.1103 26 8 1.6486 -1.5368 -3.9482 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7082 1.1609 3.4844 31 1 1.4496 -1.4980 -1.4101 32 1 1.0871 0.6162 -2.5525 33 1 2.7589 1.0461 -2.1182 34 1 1.8379 0.9554 -4.9365 35 1 3.5433 1.1799 -4.4773 36 1 2.9301 2.3327 -5.8930 37 1 3.3471 3.8553 -7.7810 38 1 4.0672 2.9550 -9.9553 39 1 4.3812 0.5315 -10.2462 40 1 3.9755 -0.9993 -8.3623 41 1 1.2527 -0.8376 -6.5130 42 1 2.5474 -1.8736 -7.1620 43 1 1.2476 -3.0054 -5.3470 44 1 2.9643 -2.8012 -4.9203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:00 Heat of formation + Delta-G solvation = -24.836597 kcal Electronic energy + Delta-G solvation = -22983.238763 eV Core-core repulsion = 19706.724469 eV Total energy + Delta-G solvation = -3276.514294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.55332 -39.62600 -37.76489 -36.52912 -34.78268 -33.04449 -31.82176 -31.11308 -30.02540 -27.81953 -27.23541 -26.06667 -24.01039 -23.02886 -22.26452 -22.10900 -21.27574 -18.77505 -18.29339 -17.53025 -16.93507 -16.83218 -16.67106 -16.42873 -15.89133 -15.79725 -15.34183 -14.89734 -14.82684 -14.71696 -14.59227 -14.37241 -13.66273 -13.53096 -13.32745 -13.14175 -12.88396 -12.75519 -12.72049 -12.39822 -12.28954 -12.24637 -12.14435 -11.92693 -11.78102 -11.55383 -11.06983 -10.95104 -10.48712 -10.42131 -9.86963 -8.98736 -8.87288 -8.09322 -6.20320 0.42806 0.47507 1.42813 1.44260 1.57159 2.43454 2.49578 2.75504 2.90185 3.18995 3.48153 3.77384 3.85208 3.97368 4.04595 4.09744 4.11417 4.22416 4.28937 4.37163 4.45491 4.54713 4.56381 4.59682 4.64923 4.70256 4.76223 4.80837 4.89055 4.95645 4.98215 5.10864 5.11643 5.26131 5.40625 5.49893 5.64697 5.69331 5.80626 5.81223 5.90331 6.18814 6.26842 6.28645 6.64308 6.81196 6.94586 7.49614 8.96695 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030877 B = 0.002911 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.613131 B = 9615.945006 C =10022.699239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.684 5.684 13 C 0.073 3.927 14 C 0.109 3.891 15 H 0.066 0.934 16 C 0.032 3.968 17 N -0.494 5.494 18 C 0.093 3.907 19 C -0.189 4.189 20 C -0.102 4.102 21 C -0.152 4.152 22 C -0.098 4.098 23 C -0.148 4.148 24 C 0.026 3.974 25 C 0.059 3.941 26 O -0.397 6.397 27 H 0.022 0.978 28 H 0.063 0.937 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.335 0.665 32 H 0.022 0.978 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.135 0.865 41 H 0.045 0.955 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -0.466 -25.310 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.023 0.977 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.314 5.314 13 C -0.058 4.058 14 C 0.050 3.950 15 H 0.084 0.916 16 C -0.096 4.096 17 N -0.210 5.210 18 C -0.004 4.004 19 C -0.210 4.210 20 C -0.121 4.121 21 C -0.171 4.171 22 C -0.117 4.117 23 C -0.169 4.169 24 C -0.100 4.100 25 C -0.018 4.018 26 O -0.317 6.317 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.064 0.936 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.849 -0.615 -24.738 25.216 hybrid contribution -1.226 0.427 0.715 1.482 sum 3.623 -0.188 -24.022 24.295 Atomic orbital electron populations 1.22229 1.00133 0.99137 0.99934 1.18958 0.89972 0.92825 0.87585 0.97739 1.21476 1.30342 1.12415 0.91042 0.92780 1.25736 0.95472 0.95909 1.01933 1.70015 1.38079 1.24326 1.23950 0.85441 0.78061 0.78587 0.79111 1.19343 1.20644 1.20571 1.60673 1.57952 1.09551 1.03201 1.21864 0.99084 0.95307 0.89498 1.22063 0.92508 0.88328 0.92068 0.91602 1.22796 1.00601 0.96422 0.89775 1.59308 1.43438 1.14618 1.03603 1.19187 0.98694 0.91442 0.91099 1.21525 1.05392 0.93221 1.00837 1.21301 0.97640 1.00281 0.92849 1.21431 1.01697 0.96018 0.97912 1.21355 0.97849 0.93394 0.99077 1.21000 1.03134 1.00992 0.91732 1.22983 0.93149 0.93655 1.00175 1.22883 1.02278 0.93255 0.83360 1.88001 1.46807 1.50259 1.46583 0.95905 0.91813 0.95140 0.92981 0.84794 0.95944 0.90418 0.93055 0.88608 0.85866 0.84504 0.83913 0.83399 0.84692 0.93644 0.86899 0.85997 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.75 8.94 71.98 0.64 -7.11 16 2 C 0.22 11.23 2.57 44.17 0.11 11.35 16 3 H 0.00 0.27 7.80 -2.39 -0.02 0.25 16 4 C -0.51 -29.32 8.84 25.60 0.23 -29.09 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.42 5.30 84.66 0.45 0.87 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 8 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.68 -30.32 6.23 -495.43 -3.09 -33.41 16 13 C 0.07 2.66 5.19 86.30 0.45 3.11 16 14 C 0.11 3.31 3.04 30.63 0.09 3.40 16 15 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 16 C 0.03 0.82 3.61 86.32 0.31 1.13 16 17 N -0.49 -11.46 4.77 -694.32 -3.31 -14.77 16 18 C 0.09 2.03 5.63 38.22 0.22 2.25 16 19 C -0.19 -4.04 8.82 22.40 0.20 -3.84 16 20 C -0.10 -1.80 10.04 22.25 0.22 -1.58 16 21 C -0.15 -2.28 10.04 22.29 0.22 -2.06 16 22 C -0.10 -1.46 10.04 22.25 0.22 -1.24 16 23 C -0.15 -2.67 9.20 22.40 0.21 -2.46 16 24 C 0.03 0.50 5.41 86.32 0.47 0.97 16 25 C 0.06 1.27 7.01 72.02 0.50 1.77 16 26 O -0.40 -11.99 10.00 -148.98 -1.49 -13.48 16 27 H 0.02 1.01 7.45 -2.39 -0.02 0.99 16 28 H 0.06 3.52 6.07 -2.39 -0.01 3.50 16 29 H 0.03 1.46 8.13 -2.38 -0.02 1.44 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.33 14.63 8.04 -89.70 -0.72 13.91 16 32 H 0.02 0.84 7.44 -2.39 -0.02 0.82 16 33 H 0.08 2.82 8.06 -2.39 -0.02 2.80 16 34 H 0.05 1.33 7.52 -2.39 -0.02 1.32 16 35 H 0.10 2.36 7.24 -2.39 -0.02 2.35 16 36 H 0.12 2.63 5.81 -2.91 -0.02 2.61 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.14 2.01 7.20 -2.91 -0.02 1.99 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.66 6.86 -2.39 -0.02 1.64 16 43 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.59 347.36 -0.81 -65.40 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.26 Total: 25.82 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.55 Total: -22.54 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -6.16 Total: -101.95 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.49 Total: -13.48 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.59 -0.81 -65.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.563 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds