Wall clock time and date at job start Tue Mar 31 2020 08:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46895 * 109.47629 * 120.00093 * 2 1 3 13 13 C 1.46907 * 111.00040 * 275.00688 * 12 2 1 14 14 C 1.53002 * 109.46901 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.50568 * 60.00007 * 14 13 12 16 16 C 1.53095 * 109.50378 * 180.08519 * 14 13 12 17 17 N 1.47016 * 109.26006 * 176.78177 * 16 14 13 18 18 C 1.39674 * 110.99961 * 177.60445 * 17 16 14 19 19 C 1.38902 * 120.07804 * 359.72594 * 18 17 16 20 20 C 1.38104 * 119.92501 * 179.76799 * 19 18 17 21 21 C 1.38284 * 120.07305 * 0.50492 * 20 19 18 22 22 C 1.38276 * 120.15064 * 359.74992 * 21 20 19 23 23 C 1.38101 * 120.07729 * 359.97438 * 22 21 20 24 24 C 1.47012 * 110.75260 * 301.38580 * 17 16 14 25 25 C 1.53100 * 109.25630 * 58.61425 * 24 17 16 26 26 O 1.43010 * 109.50766 * 299.90970 * 14 13 12 27 27 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 29 29 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 30 30 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 31 31 H 1.00889 * 111.00314 * 151.04568 * 12 2 1 32 32 H 1.09000 * 109.46764 * 299.99874 * 13 12 2 33 33 H 1.08999 * 109.47370 * 59.99326 * 13 12 2 34 34 H 1.09003 * 109.51068 * 296.71940 * 16 14 13 35 35 H 1.09004 * 109.51020 * 56.84503 * 16 14 13 36 36 H 1.08005 * 120.04187 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.96359 * 180.25752 * 20 19 18 38 38 H 1.08007 * 119.92322 * 179.72129 * 21 20 19 39 39 H 1.08000 * 119.96425 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.03993 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.50601 * 178.54520 * 24 17 16 42 42 H 1.09003 * 109.50546 * 298.63415 * 24 17 16 43 43 H 1.08988 * 109.51193 * 63.08660 * 25 24 17 44 44 H 1.09009 * 109.50282 * 183.17411 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1870 -4.8165 12 7 2.0198 -0.6925 1.1993 13 6 2.0825 0.2226 2.3469 14 6 2.5952 -0.5332 3.5744 15 1 3.5905 -0.9274 3.3696 16 6 2.6588 0.4192 4.7714 17 7 3.0780 -0.3296 5.9651 18 6 3.2004 0.5168 7.0694 19 6 2.9403 1.8749 6.9379 20 6 3.0577 2.7081 8.0330 21 6 3.4439 2.1935 9.2570 22 6 3.7087 0.8429 9.3903 23 6 3.5878 0.0031 8.3006 24 6 2.1434 -1.4293 6.2451 25 6 2.0850 -2.3632 5.0333 26 8 1.7068 -1.6126 3.8761 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.7046 1.1585 -3.4844 31 1 2.9173 -1.1204 1.0286 32 1 2.7588 1.0463 2.1182 33 1 1.0871 0.6163 2.5525 34 1 3.3785 1.2121 4.5678 35 1 1.6746 0.8553 4.9423 36 1 2.6425 2.2782 5.9812 37 1 2.8516 3.7634 7.9324 38 1 3.5392 2.8480 10.1108 39 1 4.0105 0.4442 10.3476 40 1 3.7944 -1.0518 8.4055 41 1 2.4868 -1.9857 7.1172 42 1 1.1510 -1.0227 6.4403 43 1 3.0652 -2.8112 4.8714 44 1 1.3512 -3.1487 5.2143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:06 Heat of formation + Delta-G solvation = -3.687699 kcal Electronic energy + Delta-G solvation = -22982.654125 eV Core-core repulsion = 19707.056916 eV Total energy + Delta-G solvation = -3275.597209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.62676 -38.63497 -36.06446 -35.39696 -33.04345 -31.67250 -30.83386 -30.23841 -28.50333 -26.71341 -25.34253 -24.77989 -22.90349 -22.21105 -21.23058 -20.38938 -19.65461 -17.86488 -16.65521 -16.28122 -15.96799 -15.67700 -15.50014 -14.93710 -14.74740 -14.41730 -14.15682 -13.92866 -13.79319 -13.58633 -13.12311 -12.86927 -12.65816 -12.24511 -11.90643 -11.77844 -11.63940 -11.36481 -11.20982 -10.97274 -10.85872 -10.70159 -10.41068 -10.25931 -10.11351 -10.08009 -9.80035 -9.33514 -9.14751 -8.78449 -8.45607 -8.05237 -7.19370 -6.00641 -4.06693 1.17197 1.19543 3.30153 3.34671 3.37976 3.42551 3.68508 3.90379 4.41669 4.58036 4.71061 4.74843 4.80372 4.91965 4.97826 5.09982 5.16315 5.22702 5.30352 5.32236 5.36586 5.43514 5.52834 5.64644 5.68343 5.78813 5.80851 5.89471 6.04291 6.13716 6.20131 6.34832 6.38794 6.54746 6.75301 6.92323 7.07501 7.19273 7.27417 7.38991 7.55156 7.81207 7.93352 8.31298 8.42722 8.70907 9.04538 9.59173 11.05740 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031947 B = 0.002907 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.238966 B = 9628.281412 C =10048.378455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.678 5.678 13 C 0.069 3.931 14 C 0.099 3.901 15 H 0.063 0.937 16 C 0.020 3.980 17 N -0.489 5.489 18 C 0.115 3.885 19 C -0.170 4.170 20 C -0.093 4.093 21 C -0.151 4.151 22 C -0.097 4.097 23 C -0.142 4.142 24 C 0.022 3.978 25 C 0.059 3.941 26 O -0.352 6.352 27 H 0.032 0.968 28 H 0.003 0.997 29 H 0.079 0.921 30 H 0.260 0.740 31 H 0.329 0.671 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 0.363 23.010 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.309 5.309 13 C -0.061 4.061 14 C 0.040 3.960 15 H 0.081 0.919 16 C -0.107 4.107 17 N -0.204 5.204 18 C 0.017 3.983 19 C -0.191 4.191 20 C -0.112 4.112 21 C -0.170 4.170 22 C -0.116 4.116 23 C -0.162 4.162 24 C -0.104 4.104 25 C -0.019 4.019 26 O -0.270 6.270 27 H 0.051 0.949 28 H 0.022 0.978 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.901 -0.087 22.739 23.072 hybrid contribution 0.685 0.588 -0.707 1.147 sum 4.587 0.501 22.032 22.510 Atomic orbital electron populations 1.21699 0.97834 0.99434 0.99185 1.19117 0.92726 0.92151 0.85595 0.98329 1.21310 1.31265 1.12436 0.90430 0.92142 1.24929 0.95077 0.95035 0.99061 1.69914 1.36556 1.23189 1.23302 0.86465 0.78592 0.79619 0.82862 1.19742 1.20978 1.21146 1.60621 1.32039 1.32691 1.05511 1.21879 1.00489 0.93602 0.90173 1.22269 0.93853 0.86982 0.92875 0.91874 1.23016 1.00614 0.97238 0.89882 1.59278 1.46840 1.11263 1.03008 1.19032 0.97074 0.91742 0.90469 1.21393 1.04312 0.93377 1.00039 1.21028 0.98052 0.99513 0.92603 1.21065 1.02792 0.95494 0.97643 1.20995 0.98819 0.93588 0.98187 1.20781 1.03531 1.00203 0.91719 1.22972 0.94368 0.92823 1.00201 1.22658 1.01273 0.93404 0.84532 1.88242 1.50267 1.44146 1.44329 0.94894 0.97786 0.90191 0.93024 0.85352 0.94742 0.91078 0.89058 0.92479 0.85377 0.86040 0.86302 0.86020 0.85872 0.89372 0.92961 0.92451 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 2 C 0.21 5.44 2.60 -68.87 -0.18 5.27 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.43 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 7 N -0.89 -25.68 11.31 55.43 0.63 -25.05 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 N -0.68 -14.84 6.17 -107.95 -0.67 -15.51 16 13 C 0.07 1.25 5.18 -3.82 -0.02 1.23 16 14 C 0.10 1.51 3.01 -26.68 -0.08 1.43 16 15 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 16 C 0.02 0.26 3.62 -3.71 -0.01 0.24 16 17 N -0.49 -5.91 4.77 -170.80 -0.82 -6.73 16 18 C 0.11 1.32 5.64 -83.79 -0.47 0.85 16 19 C -0.17 -1.88 8.82 -39.38 -0.35 -2.22 16 20 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 21 C -0.15 -1.33 10.04 -39.55 -0.40 -1.73 16 22 C -0.10 -0.86 10.04 -39.62 -0.40 -1.26 16 23 C -0.14 -1.43 9.20 -39.38 -0.36 -1.79 16 24 C 0.02 0.24 5.41 -3.71 -0.02 0.22 16 25 C 0.06 0.71 7.01 37.21 0.26 0.97 16 26 O -0.35 -5.72 10.34 -35.23 -0.36 -6.08 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 29 H 0.08 2.21 6.06 -51.93 -0.31 1.89 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.33 7.04 8.22 -39.30 -0.32 6.72 16 32 H 0.03 0.60 8.06 -51.93 -0.42 0.19 16 33 H 0.07 1.34 7.44 -51.93 -0.39 0.95 16 34 H 0.09 1.10 7.21 -51.93 -0.37 0.73 16 35 H 0.06 0.75 7.55 -51.93 -0.39 0.35 16 36 H 0.13 1.35 5.81 -52.48 -0.31 1.05 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.12 1.08 7.20 -52.49 -0.38 0.70 16 41 H 0.09 0.78 6.86 -51.93 -0.36 0.42 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.67 8.14 -51.94 -0.42 0.25 16 44 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -30.47 347.61 -10.43 -40.91 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.96 Total: 4.74 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.48 Total: -13.94 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.85 Total: -47.29 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.36 Total: -6.08 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.47 -10.43 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.218 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds