Wall clock time and date at job start Tue Mar 31 2020 08:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46895 * 109.47629 * 120.00093 * 2 1 3 13 13 C 1.46907 * 111.00040 * 275.00688 * 12 2 1 14 14 C 1.53002 * 109.46901 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.50568 * 60.00007 * 14 13 12 16 16 C 1.53095 * 109.50378 * 180.08519 * 14 13 12 17 17 N 1.47016 * 109.26006 * 176.78177 * 16 14 13 18 18 C 1.39674 * 110.99961 * 177.60445 * 17 16 14 19 19 C 1.38902 * 120.07804 * 359.72594 * 18 17 16 20 20 C 1.38104 * 119.92501 * 179.76799 * 19 18 17 21 21 C 1.38284 * 120.07305 * 0.50492 * 20 19 18 22 22 C 1.38276 * 120.15064 * 359.74992 * 21 20 19 23 23 C 1.38101 * 120.07729 * 359.97438 * 22 21 20 24 24 C 1.47012 * 110.75260 * 301.38580 * 17 16 14 25 25 C 1.53100 * 109.25630 * 58.61425 * 24 17 16 26 26 O 1.43010 * 109.50766 * 299.90970 * 14 13 12 27 27 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 29 29 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 30 30 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 31 31 H 1.00889 * 111.00314 * 151.04568 * 12 2 1 32 32 H 1.09000 * 109.46764 * 299.99874 * 13 12 2 33 33 H 1.08999 * 109.47370 * 59.99326 * 13 12 2 34 34 H 1.09003 * 109.51068 * 296.71940 * 16 14 13 35 35 H 1.09004 * 109.51020 * 56.84503 * 16 14 13 36 36 H 1.08005 * 120.04187 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.96359 * 180.25752 * 20 19 18 38 38 H 1.08007 * 119.92322 * 179.72129 * 21 20 19 39 39 H 1.08000 * 119.96425 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.03993 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.50601 * 178.54520 * 24 17 16 42 42 H 1.09003 * 109.50546 * 298.63415 * 24 17 16 43 43 H 1.08988 * 109.51193 * 63.08660 * 25 24 17 44 44 H 1.09009 * 109.50282 * 183.17411 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1870 -4.8165 12 7 2.0198 -0.6925 1.1993 13 6 2.0825 0.2226 2.3469 14 6 2.5952 -0.5332 3.5744 15 1 3.5905 -0.9274 3.3696 16 6 2.6588 0.4192 4.7714 17 7 3.0780 -0.3296 5.9651 18 6 3.2004 0.5168 7.0694 19 6 2.9403 1.8749 6.9379 20 6 3.0577 2.7081 8.0330 21 6 3.4439 2.1935 9.2570 22 6 3.7087 0.8429 9.3903 23 6 3.5878 0.0031 8.3006 24 6 2.1434 -1.4293 6.2451 25 6 2.0850 -2.3632 5.0333 26 8 1.7068 -1.6126 3.8761 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.7046 1.1585 -3.4844 31 1 2.9173 -1.1204 1.0286 32 1 2.7588 1.0463 2.1182 33 1 1.0871 0.6163 2.5525 34 1 3.3785 1.2121 4.5678 35 1 1.6746 0.8553 4.9423 36 1 2.6425 2.2782 5.9812 37 1 2.8516 3.7634 7.9324 38 1 3.5392 2.8480 10.1108 39 1 4.0105 0.4442 10.3476 40 1 3.7944 -1.0518 8.4055 41 1 2.4868 -1.9857 7.1172 42 1 1.1510 -1.0227 6.4403 43 1 3.0652 -2.8112 4.8714 44 1 1.3512 -3.1487 5.2143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:04 Heat of formation + Delta-G solvation = -23.520661 kcal Electronic energy + Delta-G solvation = -22983.514147 eV Core-core repulsion = 19707.056916 eV Total energy + Delta-G solvation = -3276.457231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53419 -39.58659 -37.70382 -36.49680 -34.80983 -33.00617 -31.81670 -31.09439 -30.11181 -27.89859 -27.28602 -26.08066 -24.02179 -23.01797 -22.28702 -21.78486 -21.22355 -18.83764 -18.39459 -17.58296 -16.98682 -16.75545 -16.54332 -16.38663 -15.85428 -15.74128 -15.40141 -15.22956 -14.71803 -14.62179 -14.55857 -14.37308 -13.64715 -13.60334 -13.33436 -13.16115 -12.87355 -12.71294 -12.64128 -12.36749 -12.24346 -12.21227 -12.16844 -11.99673 -11.76835 -11.39060 -11.00973 -10.86371 -10.58048 -10.38710 -9.87017 -9.01500 -8.87413 -8.13390 -6.27403 0.42764 0.47466 1.41573 1.43418 1.55488 2.40998 2.49056 2.80034 2.90228 3.15127 3.48835 3.77797 3.85428 3.98751 3.99055 4.07756 4.13993 4.19987 4.28943 4.41624 4.47133 4.52191 4.56265 4.60747 4.64368 4.68254 4.80161 4.84663 4.93965 5.00572 5.08237 5.11035 5.21973 5.26012 5.46235 5.49826 5.64659 5.66877 5.80488 5.85377 5.90193 6.21347 6.28206 6.29406 6.47211 6.78315 7.00439 7.42979 8.92663 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031947 B = 0.002907 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.238966 B = 9628.281412 C =10048.378455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.216 3.784 3 H -0.028 1.028 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.679 5.679 13 C 0.071 3.929 14 C 0.109 3.891 15 H 0.063 0.937 16 C 0.031 3.969 17 N -0.493 5.493 18 C 0.093 3.907 19 C -0.189 4.189 20 C -0.102 4.102 21 C -0.152 4.152 22 C -0.098 4.098 23 C -0.149 4.149 24 C 0.026 3.974 25 C 0.055 3.945 26 O -0.383 6.383 27 H 0.025 0.975 28 H 0.018 0.982 29 H 0.058 0.942 30 H 0.263 0.737 31 H 0.332 0.668 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -0.238 24.729 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 H -0.011 1.011 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.205 1.205 12 N -0.310 5.310 13 C -0.059 4.059 14 C 0.051 3.949 15 H 0.081 0.919 16 C -0.097 4.097 17 N -0.209 5.209 18 C -0.004 4.004 19 C -0.210 4.210 20 C -0.121 4.121 21 C -0.171 4.171 22 C -0.117 4.117 23 C -0.169 4.169 24 C -0.099 4.099 25 C -0.022 4.022 26 O -0.302 6.302 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.817 -0.690 24.490 24.969 hybrid contribution 0.396 0.804 -1.124 1.437 sum 5.212 0.114 23.367 23.941 Atomic orbital electron populations 1.21530 0.97935 0.98695 0.98841 1.18923 0.92638 0.90800 0.86866 1.01085 1.21611 1.31611 1.12647 0.91586 0.92293 1.25755 0.95164 0.95711 1.02093 1.70034 1.37300 1.24322 1.24135 0.85411 0.78094 0.78596 0.78927 1.19079 1.20613 1.20492 1.60516 1.32252 1.33184 1.05031 1.21884 1.00285 0.93624 0.90105 1.22033 0.93226 0.87184 0.92481 0.91943 1.22811 1.00543 0.96694 0.89654 1.59322 1.47093 1.11518 1.02942 1.19193 0.98466 0.91915 0.90865 1.21511 1.05217 0.93690 1.00536 1.21298 0.97868 1.00292 0.92607 1.21426 1.01577 0.96029 0.98031 1.21353 0.97857 0.93549 0.98914 1.21002 1.03306 1.01117 0.91446 1.22977 0.93998 0.92493 1.00440 1.22883 1.02060 0.93608 0.83599 1.88177 1.50963 1.44700 1.46332 0.95618 0.96264 0.92334 0.92814 0.85107 0.94215 0.92075 0.88559 0.93078 0.85862 0.84494 0.83910 0.83405 0.84705 0.86954 0.93751 0.92042 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 9.19 71.98 0.66 -5.17 16 2 C 0.22 11.37 2.60 44.17 0.12 11.49 16 3 H -0.03 -1.62 7.80 -2.38 -0.02 -1.64 16 4 C -0.54 -30.13 8.59 25.60 0.22 -29.91 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.66 5.31 84.66 0.45 1.11 16 7 N -0.92 -53.63 11.31 21.45 0.24 -53.39 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 N -0.68 -30.18 6.17 -495.43 -3.06 -33.24 16 13 C 0.07 2.62 5.18 86.30 0.45 3.07 16 14 C 0.11 3.33 3.01 30.63 0.09 3.42 16 15 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.03 0.79 3.62 86.31 0.31 1.10 16 17 N -0.49 -11.47 4.77 -694.30 -3.31 -14.78 16 18 C 0.09 2.03 5.64 38.21 0.22 2.25 16 19 C -0.19 -4.03 8.82 22.40 0.20 -3.84 16 20 C -0.10 -1.80 10.04 22.25 0.22 -1.58 16 21 C -0.15 -2.29 10.04 22.29 0.22 -2.06 16 22 C -0.10 -1.46 10.04 22.25 0.22 -1.24 16 23 C -0.15 -2.68 9.20 22.40 0.21 -2.47 16 24 C 0.03 0.53 5.41 86.32 0.47 1.00 16 25 C 0.06 1.26 7.01 72.02 0.50 1.77 16 26 O -0.38 -12.33 10.34 -148.98 -1.54 -13.87 16 27 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.02 0.89 7.45 -2.39 -0.02 0.87 16 29 H 0.06 3.30 6.06 -2.39 -0.01 3.29 16 30 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.33 14.35 8.22 -89.70 -0.74 13.62 16 32 H 0.04 1.42 8.06 -2.39 -0.02 1.40 16 33 H 0.06 2.35 7.44 -2.39 -0.02 2.33 16 34 H 0.10 2.32 7.21 -2.39 -0.02 2.31 16 35 H 0.05 1.35 7.55 -2.39 -0.02 1.34 16 36 H 0.12 2.63 5.81 -2.91 -0.02 2.61 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 38 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.14 2.02 7.20 -2.91 -0.02 2.00 16 41 H 0.11 1.72 6.86 -2.39 -0.02 1.71 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -65.12 347.61 -0.84 -65.96 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.25 Total: 24.34 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 4.56 Total: -21.07 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -6.13 Total: -101.42 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.54 Total: -13.87 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.12 -0.84 -65.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.442 kcal (2) G-P(sol) polarization free energy of solvation -65.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds