Wall clock time and date at job start Tue Mar 31 2020 08:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50705 * 109.47323 * 239.99927 * 2 1 3 5 5 H 1.07998 * 119.99933 * 245.62850 * 4 2 1 6 6 C 1.37878 * 119.99490 * 65.62973 * 4 2 1 7 7 N 1.31521 * 119.99569 * 197.49731 * 6 4 2 8 8 Si 1.86797 * 120.00484 * 17.49247 * 6 4 2 9 9 H 1.48498 * 109.47215 * 180.02562 * 8 6 4 10 10 H 1.48494 * 109.47192 * 300.00438 * 8 6 4 11 11 H 1.48504 * 109.46863 * 60.00253 * 8 6 4 12 12 N 1.46897 * 109.47121 * 119.99865 * 2 1 3 13 13 C 1.46901 * 111.00321 * 275.00152 * 12 2 1 14 14 C 1.52999 * 109.47381 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.50422 * 304.91435 * 14 13 12 16 16 C 1.53090 * 109.50677 * 184.78317 * 14 13 12 17 17 N 1.47015 * 109.25966 * 183.21833 * 16 14 13 18 18 C 1.39675 * 111.00152 * 182.39512 * 17 16 14 19 19 C 1.38909 * 120.07591 * 112.13204 * 18 17 16 20 20 C 1.38103 * 119.92295 * 179.76477 * 19 18 17 21 21 C 1.38285 * 120.07680 * 0.50977 * 20 19 18 22 22 C 1.38287 * 120.14883 * 359.74489 * 21 20 19 23 23 C 1.38102 * 120.07324 * 359.97438 * 22 21 20 24 24 C 1.47012 * 110.75272 * 58.61353 * 17 16 14 25 25 C 1.53093 * 109.26037 * 301.38684 * 24 17 16 26 26 O 1.43011 * 109.25719 * 56.84765 * 25 24 17 27 27 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 28 28 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 29 29 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 30 30 H 0.97000 * 119.99923 * 354.89568 * 7 6 4 31 31 H 1.00906 * 111.00016 * 38.95594 * 12 2 1 32 32 H 1.08999 * 109.47111 * 300.00116 * 13 12 2 33 33 H 1.08999 * 109.47170 * 59.99968 * 13 12 2 34 34 H 1.09004 * 109.51104 * 303.15295 * 16 14 13 35 35 H 1.08996 * 109.51147 * 63.28214 * 16 14 13 36 36 H 1.07994 * 120.03664 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.96430 * 180.25631 * 20 19 18 38 38 H 1.07997 * 119.92974 * 179.76318 * 21 20 19 39 39 H 1.08006 * 119.96636 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.03655 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.51027 * 181.45167 * 24 17 16 42 42 H 1.09001 * 109.54336 * 61.34443 * 24 17 16 43 43 H 1.09005 * 109.50585 * 296.91304 * 25 24 17 44 44 H 1.08997 * 109.54912 * 176.80673 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5763 -1.6385 -1.1339 6 6 1.7977 -0.1755 -2.4794 7 7 1.9165 -0.9294 -3.5505 8 14 1.3107 1.6198 -2.6502 9 1 1.1165 1.9456 -4.0859 10 1 0.0448 1.8616 -1.9126 11 1 2.3832 2.4792 -2.0877 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5950 -0.5332 3.5745 15 1 1.9685 -1.4074 3.7515 16 6 2.5481 0.3866 4.7974 17 7 3.1132 -0.3190 5.9568 18 6 3.0389 0.4692 7.1075 19 6 2.1952 0.1033 8.1486 20 6 2.1278 0.8824 9.2869 21 6 2.8910 2.0312 9.3867 22 6 3.7281 2.4011 8.3500 23 6 3.8046 1.6236 7.2112 24 6 4.4985 -0.7329 5.6902 25 6 4.5259 -1.6414 4.4583 26 8 3.9444 -0.9503 3.3495 27 1 -0.3634 0.6090 0.8277 28 1 -0.3633 0.4124 -0.9413 29 1 -0.3633 -1.0214 0.1135 30 1 2.2406 -1.8400 -3.4691 31 1 1.4496 -1.4979 1.4100 32 1 2.7588 1.0462 2.1183 33 1 1.0871 0.6163 2.5526 34 1 3.1311 1.2860 4.5991 35 1 1.5143 0.6611 5.0070 36 1 1.5958 -0.7915 8.0696 37 1 1.4751 0.5963 10.0985 38 1 2.8336 2.6407 10.2764 39 1 4.3232 3.2988 8.4312 40 1 4.4589 1.9129 6.4020 41 1 4.8884 -1.2756 6.5514 42 1 5.1133 0.1482 5.5064 43 1 3.9557 -2.5479 4.6618 44 1 5.5568 -1.9053 4.2226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:09 Heat of formation + Delta-G solvation = -2.968162 kcal Electronic energy + Delta-G solvation = -23016.547599 eV Core-core repulsion = 19740.981591 eV Total energy + Delta-G solvation = -3275.566008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54137 -38.72806 -36.30149 -35.46018 -32.94243 -31.49477 -31.22391 -30.31130 -28.96737 -26.73820 -24.88404 -24.33488 -23.17504 -22.56998 -21.31950 -20.42626 -19.73005 -17.73476 -17.33120 -16.44318 -16.34134 -15.55596 -15.41528 -15.13609 -14.81151 -14.33185 -14.16867 -13.87396 -13.69512 -13.53687 -13.37229 -12.96186 -12.75257 -12.33216 -11.90626 -11.86467 -11.82284 -11.66361 -11.52754 -11.33808 -11.11414 -10.98566 -10.46451 -10.22902 -9.92556 -9.67355 -9.54213 -9.23524 -8.99060 -8.91382 -8.71069 -8.11893 -7.34298 -6.34538 -3.92395 0.98376 1.10835 3.40359 3.42681 3.46899 3.47253 3.63696 3.89241 4.54922 4.61269 4.67145 4.71001 4.78725 4.84962 4.95845 5.08261 5.10152 5.16963 5.25612 5.33731 5.35293 5.41543 5.49372 5.56962 5.65340 5.73032 5.77790 5.81786 5.98421 6.08168 6.21660 6.22906 6.24117 6.32830 6.45804 6.52702 6.58822 6.66029 6.88548 7.12503 7.24050 7.38674 7.86467 8.34241 8.41737 8.55509 9.12204 9.74677 11.05116 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.003122 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.585259 B = 8967.487443 C = 9372.866866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.188 3.812 3 H 0.025 0.975 4 C -0.579 4.579 5 H 0.063 0.937 6 C 0.025 3.975 7 N -0.912 5.912 8 Si 1.046 2.954 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.284 1.284 12 N -0.664 5.664 13 C 0.065 3.935 14 C 0.101 3.899 15 H 0.064 0.936 16 C 0.030 3.970 17 N -0.502 5.502 18 C 0.091 3.909 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.111 4.111 23 C -0.148 4.148 24 C 0.022 3.978 25 C 0.061 3.939 26 O -0.355 6.355 27 H 0.018 0.982 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.267 0.733 31 H 0.328 0.672 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 4.365 26.796 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.079 3.921 3 H 0.043 0.957 4 C -0.617 4.617 5 H 0.081 0.919 6 C -0.179 4.179 7 N -0.547 5.547 8 Si 0.875 3.125 9 H -0.212 1.212 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.293 5.293 13 C -0.066 4.066 14 C 0.042 3.958 15 H 0.082 0.918 16 C -0.097 4.097 17 N -0.224 5.224 18 C -0.003 4.003 19 C -0.115 4.115 20 C -0.134 4.134 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.168 4.168 24 C -0.105 4.105 25 C -0.016 4.016 26 O -0.273 6.273 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.901 5.195 25.374 25.970 hybrid contribution -0.105 -0.349 1.576 1.618 sum 1.796 4.846 26.951 27.442 Atomic orbital electron populations 1.22918 1.01237 0.99894 1.00056 1.19524 0.88867 0.94505 0.89217 0.95728 1.21982 1.39225 1.10257 0.90249 0.91904 1.25688 0.95178 1.04878 0.92184 1.70852 1.42560 1.09895 1.31402 0.84041 0.76808 0.75755 0.75916 1.21190 1.20412 1.21082 1.60630 1.57937 1.08363 1.02411 1.21933 0.98177 0.96211 0.90268 1.22200 0.84511 0.96178 0.92906 0.91839 1.22880 1.00780 0.96195 0.89850 1.59850 1.20081 1.40346 1.02150 1.18879 0.97016 0.92062 0.92346 1.21069 0.98233 0.99939 0.92241 1.21125 0.99439 0.95085 0.97753 1.21184 0.97056 0.97233 0.98903 1.21044 0.98887 0.99511 0.93550 1.21718 1.00752 0.95631 0.98743 1.22902 0.87968 0.99788 0.99872 1.22628 0.99413 0.94165 0.85425 1.88231 1.26741 1.75269 1.37016 0.96270 0.92119 0.93650 0.92301 0.85545 0.90858 0.94814 0.93314 0.89625 0.85332 0.85746 0.86069 0.86098 0.86240 0.89773 0.93485 0.92470 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.00 8.85 37.16 0.33 -3.67 16 2 C 0.19 4.56 2.16 -68.86 -0.15 4.41 16 3 H 0.02 0.61 6.45 -51.93 -0.34 0.28 16 4 C -0.58 -16.76 9.11 -34.44 -0.31 -17.08 16 5 H 0.06 2.00 8.06 -52.49 -0.42 1.58 16 6 C 0.02 0.73 5.29 -17.82 -0.09 0.64 16 7 N -0.91 -28.60 13.70 55.43 0.76 -27.84 16 8 Si 1.05 25.64 26.29 -169.99 -4.47 21.17 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.25 5.76 56.52 0.33 -5.92 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.66 -14.20 6.18 -107.95 -0.67 -14.87 16 13 C 0.06 1.12 5.15 -3.82 -0.02 1.10 16 14 C 0.10 1.51 2.98 -26.69 -0.08 1.43 16 15 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 16 C 0.03 0.38 4.73 -3.71 -0.02 0.36 16 17 N -0.50 -5.89 4.70 -170.81 -0.80 -6.69 16 18 C 0.09 0.99 4.73 -83.79 -0.40 0.59 16 19 C -0.10 -0.93 9.97 -39.38 -0.39 -1.32 16 20 C -0.12 -0.94 10.04 -39.61 -0.40 -1.34 16 21 C -0.13 -1.00 10.04 -39.55 -0.40 -1.39 16 22 C -0.11 -0.97 10.04 -39.61 -0.40 -1.36 16 23 C -0.15 -1.51 8.66 -39.38 -0.34 -1.85 16 24 C 0.02 0.24 5.31 -3.71 -0.02 0.22 16 25 C 0.06 0.75 7.01 37.21 0.26 1.02 16 26 O -0.35 -5.84 10.42 -35.23 -0.37 -6.21 16 27 H 0.02 0.36 7.62 -51.93 -0.40 -0.04 16 28 H 0.06 1.40 4.88 -51.93 -0.25 1.15 16 29 H 0.04 0.97 8.01 -51.93 -0.42 0.55 16 30 H 0.27 8.37 8.73 -40.82 -0.36 8.01 16 31 H 0.33 6.66 8.39 -39.29 -0.33 6.33 16 32 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 33 H 0.03 0.54 7.56 -51.93 -0.39 0.15 16 34 H 0.05 0.63 7.65 -51.93 -0.40 0.24 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.12 1.20 7.04 -52.48 -0.37 0.83 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.53 7.02 -51.93 -0.36 0.16 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -32.20 347.73 -9.86 -42.06 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.13 Total: 5.40 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.43 Total: -18.26 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.71 Total: -49.40 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.37 Total: -6.21 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -4.47 Total: 21.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.20 -9.86 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.093 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds