Wall clock time and date at job start Tue Mar 31 2020 08:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50705 * 109.47323 * 239.99927 * 2 1 3 5 5 H 1.07998 * 119.99933 * 245.62850 * 4 2 1 6 6 C 1.37878 * 119.99490 * 65.62973 * 4 2 1 7 7 N 1.31521 * 119.99569 * 197.49731 * 6 4 2 8 8 Si 1.86797 * 120.00484 * 17.49247 * 6 4 2 9 9 H 1.48498 * 109.47215 * 180.02562 * 8 6 4 10 10 H 1.48494 * 109.47192 * 300.00438 * 8 6 4 11 11 H 1.48504 * 109.46863 * 60.00253 * 8 6 4 12 12 N 1.46897 * 109.47121 * 119.99865 * 2 1 3 13 13 C 1.46901 * 111.00321 * 275.00152 * 12 2 1 14 14 C 1.52999 * 109.47381 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.50422 * 304.91435 * 14 13 12 16 16 C 1.53090 * 109.50677 * 184.78317 * 14 13 12 17 17 N 1.47015 * 109.25966 * 183.21833 * 16 14 13 18 18 C 1.39675 * 111.00152 * 182.39512 * 17 16 14 19 19 C 1.38909 * 120.07591 * 112.13204 * 18 17 16 20 20 C 1.38103 * 119.92295 * 179.76477 * 19 18 17 21 21 C 1.38285 * 120.07680 * 0.50977 * 20 19 18 22 22 C 1.38287 * 120.14883 * 359.74489 * 21 20 19 23 23 C 1.38102 * 120.07324 * 359.97438 * 22 21 20 24 24 C 1.47012 * 110.75272 * 58.61353 * 17 16 14 25 25 C 1.53093 * 109.26037 * 301.38684 * 24 17 16 26 26 O 1.43011 * 109.25719 * 56.84765 * 25 24 17 27 27 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 28 28 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 29 29 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 30 30 H 0.97000 * 119.99923 * 354.89568 * 7 6 4 31 31 H 1.00906 * 111.00016 * 38.95594 * 12 2 1 32 32 H 1.08999 * 109.47111 * 300.00116 * 13 12 2 33 33 H 1.08999 * 109.47170 * 59.99968 * 13 12 2 34 34 H 1.09004 * 109.51104 * 303.15295 * 16 14 13 35 35 H 1.08996 * 109.51147 * 63.28214 * 16 14 13 36 36 H 1.07994 * 120.03664 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.96430 * 180.25631 * 20 19 18 38 38 H 1.07997 * 119.92974 * 179.76318 * 21 20 19 39 39 H 1.08006 * 119.96636 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.03655 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.51027 * 181.45167 * 24 17 16 42 42 H 1.09001 * 109.54336 * 61.34443 * 24 17 16 43 43 H 1.09005 * 109.50585 * 296.91304 * 25 24 17 44 44 H 1.08997 * 109.54912 * 176.80673 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5763 -1.6385 -1.1339 6 6 1.7977 -0.1755 -2.4794 7 7 1.9165 -0.9294 -3.5505 8 14 1.3107 1.6198 -2.6502 9 1 1.1165 1.9456 -4.0859 10 1 0.0448 1.8616 -1.9126 11 1 2.3832 2.4792 -2.0877 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5950 -0.5332 3.5745 15 1 1.9685 -1.4074 3.7515 16 6 2.5481 0.3866 4.7974 17 7 3.1132 -0.3190 5.9568 18 6 3.0389 0.4692 7.1075 19 6 2.1952 0.1033 8.1486 20 6 2.1278 0.8824 9.2869 21 6 2.8910 2.0312 9.3867 22 6 3.7281 2.4011 8.3500 23 6 3.8046 1.6236 7.2112 24 6 4.4985 -0.7329 5.6902 25 6 4.5259 -1.6414 4.4583 26 8 3.9444 -0.9503 3.3495 27 1 -0.3634 0.6090 0.8277 28 1 -0.3633 0.4124 -0.9413 29 1 -0.3633 -1.0214 0.1135 30 1 2.2406 -1.8400 -3.4691 31 1 1.4496 -1.4979 1.4100 32 1 2.7588 1.0462 2.1183 33 1 1.0871 0.6163 2.5526 34 1 3.1311 1.2860 4.5991 35 1 1.5143 0.6611 5.0070 36 1 1.5958 -0.7915 8.0696 37 1 1.4751 0.5963 10.0985 38 1 2.8336 2.6407 10.2764 39 1 4.3232 3.2988 8.4312 40 1 4.4589 1.9129 6.4020 41 1 4.8884 -1.2756 6.5514 42 1 5.1133 0.1482 5.5064 43 1 3.9557 -2.5479 4.6618 44 1 5.5568 -1.9053 4.2226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:08 Heat of formation + Delta-G solvation = -25.871104 kcal Electronic energy + Delta-G solvation = -23017.540745 eV Core-core repulsion = 19740.981591 eV Total energy + Delta-G solvation = -3276.559154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41937 -39.64040 -37.91415 -36.47673 -34.81757 -33.09620 -31.88198 -31.11550 -30.47075 -27.82811 -26.77081 -25.69735 -24.03263 -23.42498 -22.32599 -21.93804 -21.12813 -19.59531 -18.41447 -17.63181 -17.12844 -16.64498 -16.33522 -16.10359 -16.03850 -15.91475 -15.31482 -15.23951 -14.92001 -14.70250 -14.45069 -14.20406 -13.95328 -13.60327 -13.58554 -13.32939 -13.07990 -12.89206 -12.50175 -12.43773 -12.34795 -12.18249 -12.16758 -11.79709 -11.60774 -11.38480 -11.08522 -10.64420 -10.35202 -9.89530 -9.74821 -9.54985 -9.07002 -8.65092 -6.28683 0.30099 0.44820 1.45093 1.54525 1.72736 2.50915 2.55737 2.78192 2.81554 3.10515 3.41635 3.86172 3.91584 4.00494 4.01591 4.06014 4.09205 4.17041 4.26701 4.39964 4.42373 4.48544 4.53377 4.55346 4.57851 4.64187 4.69162 4.70301 4.79942 4.80883 4.93417 5.00900 5.09280 5.11415 5.44550 5.46752 5.52465 5.58556 5.67175 5.87012 5.87985 6.10136 6.27959 6.34736 6.43750 6.73364 6.79557 7.49503 8.68694 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.003122 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.585259 B = 8967.487443 C = 9372.866866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.190 3.810 3 H 0.026 0.974 4 C -0.585 4.585 5 H 0.015 0.985 6 C -0.028 4.028 7 N -0.944 5.944 8 Si 1.087 2.913 9 H -0.289 1.289 10 H -0.239 1.239 11 H -0.269 1.269 12 N -0.683 5.683 13 C 0.068 3.932 14 C 0.107 3.893 15 H 0.063 0.937 16 C 0.040 3.960 17 N -0.504 5.504 18 C 0.070 3.930 19 C -0.106 4.106 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.161 4.161 24 C 0.028 3.972 25 C 0.058 3.942 26 O -0.389 6.389 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.249 0.751 31 H 0.332 0.668 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.131 0.869 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 6.397 29.858 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.080 3.920 3 H 0.044 0.956 4 C -0.623 4.623 5 H 0.033 0.967 6 C -0.224 4.224 7 N -0.581 5.581 8 Si 0.908 3.092 9 H -0.215 1.215 10 H -0.164 1.164 11 H -0.194 1.194 12 N -0.313 5.313 13 C -0.062 4.062 14 C 0.048 3.952 15 H 0.081 0.919 16 C -0.087 4.087 17 N -0.226 5.226 18 C -0.023 4.023 19 C -0.125 4.125 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.181 4.181 24 C -0.099 4.099 25 C -0.019 4.019 26 O -0.308 6.308 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.802 7.206 28.487 29.395 hybrid contribution 0.328 -1.076 0.737 1.345 sum 1.131 6.129 29.223 29.880 Atomic orbital electron populations 1.22740 0.98952 1.00652 1.00981 1.19333 0.90431 0.93779 0.88407 0.95590 1.22223 1.38374 1.08763 0.92987 0.96650 1.27222 0.94780 1.08620 0.91813 1.70992 1.45046 1.09411 1.32604 0.83551 0.78747 0.70545 0.76347 1.21547 1.16364 1.19436 1.60424 1.58291 1.09337 1.03238 1.21957 0.99262 0.95372 0.89618 1.22085 0.84009 0.96329 0.92748 0.91881 1.22704 1.01337 0.95277 0.89372 1.59831 1.20197 1.40499 1.02095 1.18974 0.98308 0.92658 0.92364 1.21219 0.98205 1.00468 0.92596 1.21441 0.99412 0.94724 0.97748 1.21541 0.96048 0.97215 0.99419 1.21315 0.99144 0.99873 0.93202 1.21755 1.01003 0.95973 0.99370 1.22846 0.87936 0.99457 0.99661 1.22808 0.99858 0.94186 0.85043 1.88170 1.27464 1.75954 1.39256 0.92542 0.93164 0.93756 0.94184 0.85100 0.91979 0.92539 0.93910 0.88716 0.85074 0.83356 0.83503 0.84413 0.86882 0.88238 0.93861 0.92276 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.23 8.85 71.98 0.64 -6.60 16 2 C 0.19 9.06 2.16 44.17 0.10 9.16 16 3 H 0.03 1.25 6.45 -2.39 -0.02 1.23 16 4 C -0.59 -34.73 9.11 25.60 0.23 -34.50 16 5 H 0.02 1.02 8.06 -2.91 -0.02 1.00 16 6 C -0.03 -1.65 5.29 84.65 0.45 -1.20 16 7 N -0.94 -61.08 13.70 21.45 0.29 -60.79 16 8 Si 1.09 50.79 26.29 68.60 1.80 52.59 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.24 -9.71 5.76 99.48 0.57 -9.14 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 N -0.68 -29.00 6.18 -495.45 -3.06 -32.07 16 13 C 0.07 2.27 5.15 86.30 0.44 2.71 16 14 C 0.11 3.11 2.98 30.62 0.09 3.20 16 15 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 16 C 0.04 0.97 4.73 86.31 0.41 1.38 16 17 N -0.50 -11.21 4.70 -694.33 -3.26 -14.47 16 18 C 0.07 1.42 4.73 38.21 0.18 1.60 16 19 C -0.11 -1.84 9.97 22.40 0.22 -1.62 16 20 C -0.11 -1.54 10.04 22.25 0.22 -1.32 16 21 C -0.12 -1.58 10.04 22.29 0.22 -1.36 16 22 C -0.12 -1.76 10.04 22.25 0.22 -1.53 16 23 C -0.16 -3.05 8.66 22.40 0.19 -2.85 16 24 C 0.03 0.59 5.31 86.31 0.46 1.04 16 25 C 0.06 1.40 7.01 72.01 0.50 1.90 16 26 O -0.39 -12.82 10.42 -148.98 -1.55 -14.38 16 27 H 0.06 1.92 7.62 -2.39 -0.02 1.90 16 28 H 0.05 2.18 4.88 -2.39 -0.01 2.17 16 29 H 0.04 1.82 8.01 -2.39 -0.02 1.80 16 30 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 31 H 0.33 13.43 8.39 -89.69 -0.75 12.67 16 32 H 0.06 2.21 8.06 -2.39 -0.02 2.19 16 33 H 0.06 1.64 7.56 -2.39 -0.02 1.62 16 34 H 0.04 1.07 7.65 -2.39 -0.02 1.06 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 37 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.11 2.20 7.04 -2.91 -0.02 2.18 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 0.94 7.02 -2.39 -0.02 0.93 16 43 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -71.57 347.73 -1.13 -72.71 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.05 Total: 26.38 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.59 Total: -29.97 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -6.03 Total: -107.33 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -1.55 Total: -14.38 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 1.80 Total: 52.59 kcal Total: -71.57 -1.13 -72.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.836 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds