Wall clock time and date at job start Tue Mar 31 2020 08:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47425 * 2 1 4 4 C 1.50696 * 109.47386 * 120.00572 * 2 1 3 5 5 H 1.08002 * 120.00153 * 119.99910 * 4 2 1 6 6 C 1.37873 * 119.99888 * 299.99593 * 4 2 1 7 7 N 1.31513 * 120.00123 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47274 * 59.99873 * 8 6 4 10 10 H 1.48501 * 109.47601 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46993 * 299.99773 * 8 6 4 12 12 N 1.46906 * 109.46999 * 240.00496 * 2 1 3 13 13 C 1.46903 * 110.99717 * 84.99384 * 12 2 1 14 14 C 1.53005 * 109.46585 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.50621 * 60.00385 * 14 13 12 16 16 C 1.53103 * 109.50571 * 180.08952 * 14 13 12 17 17 N 1.47006 * 109.25742 * 176.82783 * 16 14 13 18 18 C 1.39674 * 110.99934 * 177.60957 * 17 16 14 19 19 C 1.38912 * 120.07254 * 359.72164 * 18 17 16 20 20 C 1.38105 * 119.92028 * 179.77078 * 19 18 17 21 21 C 1.38286 * 120.07814 * 0.50817 * 20 19 18 22 22 C 1.38280 * 120.14961 * 359.74260 * 21 20 19 23 23 C 1.38101 * 120.07445 * 0.02562 * 22 21 20 24 24 C 1.47017 * 110.75618 * 301.38115 * 17 16 14 25 25 C 1.53103 * 109.25209 * 58.61755 * 24 17 16 26 26 O 1.43012 * 109.50713 * 299.91430 * 14 13 12 27 27 H 1.09001 * 109.46463 * 299.99340 * 1 2 3 28 28 H 1.08999 * 109.47585 * 59.99038 * 1 2 3 29 29 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00217 * 180.02562 * 7 6 4 31 31 H 1.00891 * 111.00640 * 208.95399 * 12 2 1 32 32 H 1.09003 * 109.47136 * 60.00773 * 13 12 2 33 33 H 1.08996 * 109.47283 * 300.00143 * 13 12 2 34 34 H 1.09004 * 109.50456 * 296.76537 * 16 14 13 35 35 H 1.08998 * 109.50572 * 56.89301 * 16 14 13 36 36 H 1.07995 * 120.03912 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.95931 * 180.25237 * 20 19 18 38 38 H 1.08003 * 119.92343 * 179.72413 * 21 20 19 39 39 H 1.08003 * 119.96552 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.04077 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.51060 * 178.55176 * 24 17 16 42 42 H 1.08999 * 109.50995 * 298.64545 * 24 17 16 43 43 H 1.08993 * 109.50776 * 63.08798 * 25 24 17 44 44 H 1.09008 * 109.50126 * 183.17451 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1198 4.0077 9 1 3.8077 -1.1193 4.0075 10 1 1.8283 -0.4196 5.2204 11 1 1.8281 -2.5201 4.0079 12 7 2.0196 -0.6924 -1.1996 13 6 2.0823 0.2228 -2.3469 14 6 2.5948 -0.5330 -3.5746 15 1 1.9185 -1.3565 -3.8036 16 6 2.6626 0.4206 -4.7705 17 7 3.2269 -0.2908 -5.9265 18 6 3.2554 0.5316 -7.0552 19 6 2.7793 1.8344 -6.9794 20 6 2.8134 2.6463 -8.0961 21 6 3.3109 2.1603 -9.2913 22 6 3.7807 0.8623 -9.3716 23 6 3.7541 0.0465 -8.2576 24 6 4.5683 -0.8067 -5.6168 25 6 4.4813 -1.7480 -4.4124 26 8 3.9016 -1.0486 -3.3068 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.7090 1.1611 3.4845 31 1 2.9172 -1.1205 -1.0290 32 1 2.7587 1.0464 -2.1183 33 1 1.0869 0.6165 -2.5525 34 1 1.6596 0.7718 -5.0133 35 1 3.2966 1.2717 -4.5219 36 1 2.3869 2.2132 -6.0473 37 1 2.4472 3.6606 -8.0368 38 1 3.3322 2.7960 -10.1642 39 1 4.1683 0.4857 -10.3067 40 1 4.1216 -0.9671 -8.3208 41 1 4.9564 -1.3516 -6.4773 42 1 5.2329 0.0247 -5.3824 43 1 3.8599 -2.6068 -4.6658 44 1 5.4814 -2.0889 -4.1440 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:13 Heat of formation + Delta-G solvation = -5.982701 kcal Electronic energy + Delta-G solvation = -22986.038106 eV Core-core repulsion = 19710.341378 eV Total energy + Delta-G solvation = -3275.696728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.64387 -38.67374 -36.07239 -35.40409 -33.03455 -31.66986 -30.83698 -30.26675 -28.49138 -26.78505 -25.32217 -24.78220 -22.93036 -22.21792 -21.22271 -20.36745 -19.64879 -17.87233 -16.54352 -16.40325 -15.99428 -15.67655 -15.53145 -14.94403 -14.82523 -14.44903 -14.15779 -13.93600 -13.74587 -13.67951 -13.15117 -12.86461 -12.70649 -12.17074 -11.88998 -11.70356 -11.67018 -11.38803 -11.14546 -10.97831 -10.80651 -10.71950 -10.63936 -10.21201 -10.14487 -10.08659 -9.80938 -9.39260 -9.14965 -8.79526 -8.43849 -8.05664 -7.22431 -5.99380 -4.05294 1.16889 1.19371 3.33757 3.34085 3.37788 3.41183 3.68056 3.84749 4.42812 4.57113 4.69722 4.74467 4.78715 4.91678 4.97022 5.08290 5.16727 5.22581 5.31661 5.32198 5.37559 5.42872 5.51964 5.63264 5.69155 5.75040 5.81121 5.94553 6.04530 6.18907 6.23623 6.34661 6.36942 6.54185 6.74721 6.90151 7.06996 7.16190 7.24967 7.30535 7.53065 7.81934 7.94137 8.31391 8.44656 8.72799 9.05904 9.60365 11.07103 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.002947 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.589017 B = 9500.286584 C =10083.670734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.685 5.685 13 C 0.071 3.929 14 C 0.097 3.903 15 H 0.075 0.925 16 C 0.020 3.980 17 N -0.488 5.488 18 C 0.114 3.886 19 C -0.170 4.170 20 C -0.093 4.093 21 C -0.151 4.151 22 C -0.097 4.097 23 C -0.142 4.142 24 C 0.022 3.978 25 C 0.063 3.937 26 O -0.372 6.372 27 H 0.080 0.920 28 H 0.003 0.997 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.340 0.660 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 0.779 -22.581 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.317 5.317 13 C -0.060 4.060 14 C 0.039 3.961 15 H 0.093 0.907 16 C -0.107 4.107 17 N -0.203 5.203 18 C 0.017 3.983 19 C -0.191 4.191 20 C -0.112 4.112 21 C -0.170 4.170 22 C -0.116 4.116 23 C -0.162 4.162 24 C -0.103 4.103 25 C -0.014 4.014 26 O -0.290 6.290 27 H 0.099 0.901 28 H 0.022 0.978 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.302 0.218 -22.428 23.047 hybrid contribution 1.287 0.736 0.862 1.715 sum 6.589 0.954 -21.566 22.570 Atomic orbital electron populations 1.21725 0.97948 0.99360 0.99289 1.19102 0.92524 0.92326 0.85672 0.98241 1.21235 1.31328 1.12492 0.90446 0.92227 1.24917 0.95083 0.95022 0.99028 1.69887 1.36724 1.22952 1.23509 0.86577 0.79088 0.79783 0.82037 1.20336 1.21342 1.20183 1.60696 1.32871 1.32419 1.05718 1.21862 0.99315 0.94106 0.90692 1.22353 0.84659 0.95647 0.93460 0.90739 1.23014 1.01128 0.96577 0.89980 1.59274 1.22007 1.35248 1.03793 1.19033 0.97243 0.90388 0.91676 1.21397 1.04976 0.92821 0.99905 1.21030 0.98112 0.99428 0.92627 1.21066 1.01726 0.96234 0.97953 1.20996 0.98722 0.93963 0.97912 1.20780 1.03631 1.00124 0.91691 1.22957 0.87920 0.99465 1.00003 1.22645 0.99442 0.93763 0.85573 1.88080 1.31563 1.73004 1.36379 0.90103 0.97796 0.94927 0.92918 0.84228 0.95638 0.90470 0.88882 0.92659 0.85367 0.86034 0.86298 0.86016 0.85872 0.89273 0.93002 0.92149 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.19 37.16 0.34 -2.81 16 2 C 0.21 5.47 2.60 -68.86 -0.18 5.29 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.48 8.59 -34.44 -0.30 -14.78 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.80 11.32 55.43 0.63 -25.17 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.69 -15.13 6.30 -107.95 -0.68 -15.81 16 13 C 0.07 1.29 5.22 -3.82 -0.02 1.27 16 14 C 0.10 1.48 3.07 -26.68 -0.08 1.40 16 15 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.02 0.26 3.62 -3.71 -0.01 0.25 16 17 N -0.49 -5.89 4.77 -170.80 -0.82 -6.70 16 18 C 0.11 1.32 5.63 -83.78 -0.47 0.84 16 19 C -0.17 -1.87 8.82 -39.38 -0.35 -2.22 16 20 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 21 C -0.15 -1.33 10.04 -39.55 -0.40 -1.72 16 22 C -0.10 -0.86 10.04 -39.62 -0.40 -1.25 16 23 C -0.14 -1.42 9.20 -39.38 -0.36 -1.79 16 24 C 0.02 0.24 5.41 -3.71 -0.02 0.22 16 25 C 0.06 0.74 7.01 37.21 0.26 1.00 16 26 O -0.37 -5.82 9.82 -35.23 -0.35 -6.17 16 27 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 28 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.34 7.63 7.62 -39.30 -0.30 7.33 16 32 H 0.03 0.48 8.06 -51.93 -0.42 0.07 16 33 H 0.08 1.36 7.44 -51.93 -0.39 0.98 16 34 H 0.09 1.12 7.21 -51.93 -0.37 0.75 16 35 H 0.06 0.72 7.55 -51.93 -0.39 0.33 16 36 H 0.13 1.35 5.81 -52.49 -0.31 1.05 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.12 1.07 7.20 -52.48 -0.38 0.69 16 41 H 0.09 0.77 6.86 -51.93 -0.36 0.42 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -30.20 346.74 -10.42 -40.62 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.93 Total: 5.41 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -2.48 Total: -13.97 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.87 Total: -47.68 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.35 Total: -6.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.20 -10.42 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.641 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds