Wall clock time and date at job start Tue Mar 31 2020 08:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47425 * 2 1 4 4 C 1.50696 * 109.47386 * 120.00572 * 2 1 3 5 5 H 1.08002 * 120.00153 * 119.99910 * 4 2 1 6 6 C 1.37873 * 119.99888 * 299.99593 * 4 2 1 7 7 N 1.31513 * 120.00123 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47274 * 59.99873 * 8 6 4 10 10 H 1.48501 * 109.47601 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46993 * 299.99773 * 8 6 4 12 12 N 1.46906 * 109.46999 * 240.00496 * 2 1 3 13 13 C 1.46903 * 110.99717 * 84.99384 * 12 2 1 14 14 C 1.53005 * 109.46585 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.50621 * 60.00385 * 14 13 12 16 16 C 1.53103 * 109.50571 * 180.08952 * 14 13 12 17 17 N 1.47006 * 109.25742 * 176.82783 * 16 14 13 18 18 C 1.39674 * 110.99934 * 177.60957 * 17 16 14 19 19 C 1.38912 * 120.07254 * 359.72164 * 18 17 16 20 20 C 1.38105 * 119.92028 * 179.77078 * 19 18 17 21 21 C 1.38286 * 120.07814 * 0.50817 * 20 19 18 22 22 C 1.38280 * 120.14961 * 359.74260 * 21 20 19 23 23 C 1.38101 * 120.07445 * 0.02562 * 22 21 20 24 24 C 1.47017 * 110.75618 * 301.38115 * 17 16 14 25 25 C 1.53103 * 109.25209 * 58.61755 * 24 17 16 26 26 O 1.43012 * 109.50713 * 299.91430 * 14 13 12 27 27 H 1.09001 * 109.46463 * 299.99340 * 1 2 3 28 28 H 1.08999 * 109.47585 * 59.99038 * 1 2 3 29 29 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00217 * 180.02562 * 7 6 4 31 31 H 1.00891 * 111.00640 * 208.95399 * 12 2 1 32 32 H 1.09003 * 109.47136 * 60.00773 * 13 12 2 33 33 H 1.08996 * 109.47283 * 300.00143 * 13 12 2 34 34 H 1.09004 * 109.50456 * 296.76537 * 16 14 13 35 35 H 1.08998 * 109.50572 * 56.89301 * 16 14 13 36 36 H 1.07995 * 120.03912 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.95931 * 180.25237 * 20 19 18 38 38 H 1.08003 * 119.92343 * 179.72413 * 21 20 19 39 39 H 1.08003 * 119.96552 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.04077 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.51060 * 178.55176 * 24 17 16 42 42 H 1.08999 * 109.50995 * 298.64545 * 24 17 16 43 43 H 1.08993 * 109.50776 * 63.08798 * 25 24 17 44 44 H 1.09008 * 109.50126 * 183.17451 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1198 4.0077 9 1 3.8077 -1.1193 4.0075 10 1 1.8283 -0.4196 5.2204 11 1 1.8281 -2.5201 4.0079 12 7 2.0196 -0.6924 -1.1996 13 6 2.0823 0.2228 -2.3469 14 6 2.5948 -0.5330 -3.5746 15 1 1.9185 -1.3565 -3.8036 16 6 2.6626 0.4206 -4.7705 17 7 3.2269 -0.2908 -5.9265 18 6 3.2554 0.5316 -7.0552 19 6 2.7793 1.8344 -6.9794 20 6 2.8134 2.6463 -8.0961 21 6 3.3109 2.1603 -9.2913 22 6 3.7807 0.8623 -9.3716 23 6 3.7541 0.0465 -8.2576 24 6 4.5683 -0.8067 -5.6168 25 6 4.4813 -1.7480 -4.4124 26 8 3.9016 -1.0486 -3.3068 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.7090 1.1611 3.4845 31 1 2.9172 -1.1205 -1.0290 32 1 2.7587 1.0464 -2.1183 33 1 1.0869 0.6165 -2.5525 34 1 1.6596 0.7718 -5.0133 35 1 3.2966 1.2717 -4.5219 36 1 2.3869 2.2132 -6.0473 37 1 2.4472 3.6606 -8.0368 38 1 3.3322 2.7960 -10.1642 39 1 4.1683 0.4857 -10.3067 40 1 4.1216 -0.9671 -8.3208 41 1 4.9564 -1.3516 -6.4773 42 1 5.2329 0.0247 -5.3824 43 1 3.8599 -2.6068 -4.6658 44 1 5.4814 -2.0889 -4.1440 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:13 Heat of formation + Delta-G solvation = -25.558373 kcal Electronic energy + Delta-G solvation = -22986.886971 eV Core-core repulsion = 19710.341378 eV Total energy + Delta-G solvation = -3276.545593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55251 -39.62165 -37.69054 -36.52613 -34.80151 -33.01396 -31.81706 -31.11508 -30.10106 -27.96212 -27.26958 -26.07371 -24.04932 -23.02089 -22.28012 -21.74433 -21.23699 -18.84113 -18.39200 -17.58900 -16.93635 -16.74305 -16.71218 -16.42699 -15.87237 -15.80387 -15.41945 -15.16938 -14.77927 -14.65215 -14.57685 -14.34850 -13.63842 -13.54272 -13.40508 -13.05375 -12.85064 -12.72656 -12.55459 -12.50147 -12.30267 -12.20593 -12.17529 -11.93639 -11.77026 -11.49764 -11.03230 -10.88070 -10.57006 -10.42712 -9.87069 -9.07916 -8.87532 -8.13461 -6.27608 0.42611 0.47430 1.42269 1.44499 1.52186 2.40856 2.48202 2.75839 2.90029 3.14867 3.47548 3.76896 3.84523 3.96380 4.04145 4.09186 4.10990 4.21959 4.28706 4.36672 4.45144 4.54246 4.56288 4.60426 4.64584 4.70324 4.80347 4.83839 4.95723 4.99888 5.07638 5.10915 5.21173 5.25719 5.46932 5.49721 5.64610 5.66193 5.80129 5.86433 5.89730 6.19188 6.22468 6.28203 6.46859 6.76157 6.98982 7.42554 8.92197 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.002947 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.589017 B = 9500.286584 C =10083.670734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.032 1.032 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.682 5.682 13 C 0.073 3.927 14 C 0.109 3.891 15 H 0.069 0.931 16 C 0.031 3.969 17 N -0.493 5.493 18 C 0.093 3.907 19 C -0.189 4.189 20 C -0.102 4.102 21 C -0.152 4.152 22 C -0.098 4.098 23 C -0.148 4.148 24 C 0.026 3.974 25 C 0.059 3.941 26 O -0.398 6.398 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.337 0.663 32 H 0.015 0.985 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 0.165 -24.305 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.014 1.014 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.313 5.313 13 C -0.058 4.058 14 C 0.051 3.949 15 H 0.087 0.913 16 C -0.096 4.096 17 N -0.208 5.208 18 C -0.005 4.005 19 C -0.210 4.210 20 C -0.121 4.121 21 C -0.171 4.171 22 C -0.117 4.117 23 C -0.169 4.169 24 C -0.100 4.100 25 C -0.018 4.018 26 O -0.318 6.318 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.034 0.966 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.134 -0.398 -24.185 24.954 hybrid contribution 1.059 0.965 1.286 1.925 sum 7.193 0.567 -22.899 24.008 Atomic orbital electron populations 1.21548 0.97486 0.98961 0.99205 1.18930 0.92868 0.90681 0.86860 1.01439 1.21557 1.31774 1.12745 0.91722 0.92483 1.25741 0.95143 0.95702 1.02040 1.70013 1.37397 1.24036 1.24275 0.85530 0.78692 0.78702 0.78207 1.19670 1.20736 1.19562 1.60622 1.32628 1.32788 1.05303 1.21900 0.99655 0.93629 0.90595 1.22069 0.84683 0.95504 0.92667 0.91343 1.22806 1.01534 0.95655 0.89644 1.59320 1.22667 1.35380 1.03465 1.19195 0.98618 0.90727 0.91919 1.21514 1.05738 0.93246 1.00458 1.21299 0.98081 1.00095 0.92593 1.21428 1.00592 0.96655 0.98378 1.21355 0.97944 0.93819 0.98553 1.21002 1.03428 1.00945 0.91475 1.22978 0.87395 0.99138 1.00451 1.22892 1.00240 0.93683 0.84961 1.88031 1.31481 1.73641 1.38597 0.92360 0.95662 0.95279 0.92771 0.84602 0.96641 0.89986 0.88372 0.93292 0.85873 0.84495 0.83907 0.83393 0.84680 0.86831 0.93785 0.91814 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.81 9.19 71.98 0.66 -5.15 16 2 C 0.21 11.39 2.60 44.17 0.11 11.51 16 3 H -0.03 -1.86 7.80 -2.39 -0.02 -1.88 16 4 C -0.54 -30.71 8.59 25.60 0.22 -30.49 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.17 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.82 11.32 21.45 0.24 -53.58 16 8 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 N -0.68 -30.67 6.30 -495.44 -3.12 -33.79 16 13 C 0.07 2.69 5.22 86.30 0.45 3.14 16 14 C 0.11 3.34 3.07 30.63 0.09 3.44 16 15 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 16 C 0.03 0.81 3.62 86.32 0.31 1.12 16 17 N -0.49 -11.45 4.77 -694.30 -3.31 -14.77 16 18 C 0.09 2.03 5.63 38.22 0.22 2.24 16 19 C -0.19 -4.04 8.82 22.40 0.20 -3.84 16 20 C -0.10 -1.80 10.04 22.25 0.22 -1.58 16 21 C -0.15 -2.28 10.04 22.29 0.22 -2.06 16 22 C -0.10 -1.46 10.04 22.25 0.22 -1.24 16 23 C -0.15 -2.67 9.20 22.40 0.21 -2.46 16 24 C 0.03 0.52 5.41 86.32 0.47 0.98 16 25 C 0.06 1.30 7.01 72.02 0.50 1.81 16 26 O -0.40 -12.44 9.82 -148.98 -1.46 -13.90 16 27 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 28 H 0.02 1.13 7.45 -2.39 -0.02 1.11 16 29 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.34 15.41 7.62 -89.70 -0.68 14.73 16 32 H 0.02 0.60 8.06 -2.39 -0.02 0.59 16 33 H 0.08 2.93 7.44 -2.39 -0.02 2.91 16 34 H 0.10 2.38 7.21 -2.38 -0.02 2.36 16 35 H 0.05 1.31 7.55 -2.39 -0.02 1.29 16 36 H 0.12 2.63 5.81 -2.91 -0.02 2.61 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 2.01 7.20 -2.91 -0.02 1.99 16 41 H 0.11 1.70 6.86 -2.39 -0.02 1.69 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -64.87 346.74 -0.77 -65.64 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.30 Total: 25.44 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 4.56 Total: -21.39 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -6.19 Total: -102.13 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.46 Total: -13.90 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -64.87 -0.77 -65.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.081 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds