Wall clock time and date at job start Tue Mar 31 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46948 * 2 1 4 4 N 1.46897 * 109.46925 * 119.99020 * 2 1 3 5 5 C 1.46901 * 111.00404 * 275.00271 * 4 2 1 6 6 C 1.53000 * 109.47232 * 180.02562 * 5 4 2 7 7 N 1.46892 * 109.47150 * 180.02562 * 6 5 4 8 8 C 1.47487 * 111.00017 * 74.02614 * 7 6 5 9 9 C 1.53518 * 87.93142 * 138.70212 * 8 7 6 10 10 C 1.47486 * 111.00171 * 169.99512 * 7 6 5 11 11 C 1.50690 * 109.47299 * 239.99564 * 2 1 3 12 12 C 1.38296 * 119.93124 * 279.72414 * 11 2 1 13 13 C 1.38103 * 120.07222 * 179.72709 * 12 11 2 14 14 C 1.38883 * 119.92485 * 0.54549 * 13 12 11 15 15 O 1.35754 * 120.06521 * 179.74877 * 14 13 12 16 16 C 1.34831 * 116.99680 * 174.44545 * 15 14 13 17 17 H 1.08003 * 120.00188 * 5.05658 * 16 15 14 18 18 C 1.38650 * 119.99778 * 185.05524 * 16 15 14 19 19 N 1.31560 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47005 * 89.99828 * 20 18 16 22 22 H 1.48495 * 109.47490 * 210.00008 * 20 18 16 23 23 H 1.48504 * 109.46854 * 330.00016 * 20 18 16 24 24 C 1.38879 * 119.86545 * 359.73183 * 14 13 12 25 25 C 1.38099 * 119.92617 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.47101 * 60.00558 * 1 2 3 27 27 H 1.08996 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47460 * 300.00589 * 1 2 3 29 29 H 1.00908 * 110.99574 * 151.04835 * 4 2 1 30 30 H 1.08994 * 109.46956 * 300.00032 * 5 4 2 31 31 H 1.09002 * 109.46721 * 60.00372 * 5 4 2 32 32 H 1.09007 * 109.46805 * 300.00009 * 6 5 4 33 33 H 1.09001 * 109.47415 * 59.99584 * 6 5 4 34 34 H 1.08994 * 113.47660 * 253.46980 * 8 7 6 35 35 H 1.08999 * 113.47197 * 23.94236 * 8 7 6 36 36 H 1.08996 * 114.17271 * 220.33157 * 9 8 7 37 37 H 1.09002 * 114.33985 * 87.63464 * 9 8 7 38 38 H 1.08999 * 113.47890 * 336.07012 * 10 7 6 39 39 H 1.09004 * 113.46975 * 106.52979 * 10 7 6 40 40 H 1.07999 * 119.96878 * 0.02562 * 12 11 2 41 41 H 1.07995 * 120.03919 * 180.27242 * 13 12 11 42 42 H 0.97003 * 120.00064 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.03797 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.96192 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6923 1.1995 5 6 2.0824 0.2229 2.3469 6 6 2.5961 -0.5324 3.5743 7 7 2.6583 0.3826 4.7217 8 6 1.3083 0.6731 5.2399 9 6 1.8867 0.5525 6.6568 10 6 2.9186 -0.3547 5.9723 11 6 2.0324 -0.7104 -1.2303 12 6 2.0716 -2.0925 -1.2614 13 6 2.5261 -2.7467 -2.3895 14 6 2.9548 -2.0149 -3.4893 15 8 3.4070 -2.6550 -4.5978 16 6 3.6988 -1.8908 -5.6697 17 1 3.6476 -0.8145 -5.5956 18 6 4.0645 -2.4867 -6.8670 19 7 4.1264 -3.7977 -6.9574 20 14 4.4681 -1.4280 -8.3522 21 1 5.9186 -1.1100 -8.3538 22 1 4.1214 -2.1645 -9.5941 23 1 3.6851 -0.1677 -8.2891 24 6 2.9196 -0.6270 -3.4529 25 6 2.4583 0.0210 -2.3241 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.9174 -1.1203 1.0289 30 1 2.7587 1.0464 2.1182 31 1 1.0869 0.6166 2.5525 32 1 1.9200 -1.3563 3.8032 33 1 3.5916 -0.9259 3.3685 34 1 0.9570 1.6761 4.9982 35 1 0.5767 -0.0992 5.0024 36 1 1.2360 0.0354 7.3620 37 1 2.3009 1.4795 7.0534 38 1 2.6168 -1.4012 5.9303 39 1 3.9321 -0.2226 6.3512 40 1 1.7418 -2.6610 -0.4044 41 1 2.5523 -3.8260 -2.4149 42 1 4.3827 -4.2145 -7.7949 43 1 3.2527 -0.0552 -4.3064 44 1 2.4303 1.1003 -2.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697329188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:01 Heat of formation + Delta-G solvation = 33.198254 kcal Electronic energy + Delta-G solvation = -22146.163048 eV Core-core repulsion = 18872.165334 eV Total energy + Delta-G solvation = -3273.997714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.27524 -39.20344 -37.54969 -35.63284 -32.67704 -32.06918 -30.22539 -29.55587 -27.94028 -26.38801 -25.68429 -25.34070 -22.49618 -22.17435 -21.34135 -20.21393 -19.88848 -17.93818 -17.09224 -16.42987 -16.21297 -15.70026 -15.46264 -14.79048 -14.53447 -14.22783 -13.97370 -13.73728 -13.49803 -13.39405 -12.98518 -12.77346 -12.55694 -12.53410 -12.26849 -11.86100 -11.77901 -11.67163 -11.58839 -11.24199 -11.15418 -11.05142 -10.80348 -10.66974 -10.62728 -10.42895 -10.27352 -9.33991 -9.20381 -8.83263 -8.39300 -8.17104 -7.18123 -6.45571 -4.04472 2.22509 2.29943 3.12076 3.13116 3.17910 3.58991 3.96169 4.10816 4.33110 4.52633 4.57029 4.71411 4.97733 5.01701 5.07684 5.08379 5.14962 5.30818 5.32346 5.39391 5.42362 5.44928 5.48840 5.61884 5.65446 5.69839 5.73502 5.83403 5.88122 5.98924 6.02411 6.06701 6.23452 6.39047 6.46629 6.72349 6.73538 6.87012 7.03631 7.04951 7.26451 7.41177 7.43466 7.53407 7.83179 7.99491 9.00079 9.70393 10.72406 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039499 B = 0.002406 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.714450 B =11634.753354 C =11780.681231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.144 3.856 3 H 0.041 0.959 4 N -0.685 5.685 5 C 0.065 3.935 6 C 0.021 3.979 7 N -0.474 5.474 8 C -0.004 4.004 9 C -0.148 4.148 10 C -0.002 4.002 11 C -0.193 4.193 12 C -0.055 4.055 13 C -0.195 4.195 14 C 0.155 3.845 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.234 4.234 25 C -0.065 4.065 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.345 0.655 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 8.074 21.136 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.035 3.965 3 H 0.059 0.941 4 N -0.318 5.318 5 C -0.065 4.065 6 C -0.108 4.108 7 N -0.197 5.197 8 C -0.133 4.133 9 C -0.186 4.186 10 C -0.132 4.132 11 C -0.194 4.194 12 C -0.074 4.074 13 C -0.214 4.214 14 C 0.101 3.899 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.254 4.254 25 C -0.084 4.084 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.164 0.836 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.066 7.935 20.797 22.829 hybrid contribution 0.498 0.377 -0.973 1.156 sum -4.567 8.312 19.824 21.976 Atomic orbital electron populations 1.21767 0.94598 1.02230 1.00348 1.20120 0.95088 0.94495 0.86788 0.94116 1.60564 1.33700 1.32992 1.04500 1.21815 1.00445 0.94086 0.90114 1.22630 1.01549 0.94686 0.91899 1.68907 1.17796 1.31325 1.01685 1.23786 0.92382 1.02561 0.94540 1.23113 0.98409 1.00753 0.96318 1.23763 1.00904 0.97076 0.91413 1.19257 1.10251 0.93815 0.96084 1.20486 0.97140 0.93355 0.96421 1.20254 1.08394 0.99402 0.93384 1.19428 0.91078 0.90930 0.88443 1.83982 1.70665 1.35316 1.18149 1.21321 1.47353 0.90749 0.87387 0.89101 1.25293 0.96809 0.96308 0.98149 1.70040 1.44115 1.08651 1.26930 0.85713 0.78988 0.79066 0.79670 1.19887 1.20243 1.19213 1.21119 1.09851 0.94420 0.99986 1.20586 0.96912 0.98127 0.92740 0.92624 0.92018 0.93666 0.83619 0.94675 0.91331 0.93095 0.90637 0.89872 0.91114 0.90730 0.89003 0.91252 0.89799 0.86333 0.86579 0.92021 0.85621 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.39 37.16 0.35 -1.34 16 2 C 0.14 1.98 2.82 -68.87 -0.19 1.79 16 3 H 0.04 0.56 7.66 -51.93 -0.40 0.16 16 4 N -0.69 -8.49 5.68 -107.96 -0.61 -9.10 16 5 C 0.07 0.71 5.59 -3.82 -0.02 0.69 16 6 C 0.02 0.21 5.08 -3.83 -0.02 0.19 16 7 N -0.47 -4.45 6.41 -244.64 -1.57 -6.02 16 8 C 0.00 -0.03 7.00 -7.53 -0.05 -0.08 16 9 C -0.15 -0.94 8.47 -26.20 -0.22 -1.16 16 10 C 0.00 -0.02 7.70 -7.54 -0.06 -0.08 16 11 C -0.19 -3.25 4.72 -104.58 -0.49 -3.75 16 12 C -0.06 -0.99 8.99 -39.61 -0.36 -1.34 16 13 C -0.20 -4.13 9.99 -39.39 -0.39 -4.52 16 14 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 15 O -0.18 -5.10 9.76 0.03 0.00 -5.10 16 16 C -0.39 -10.99 9.49 30.88 0.29 -10.70 16 17 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.36 13.67 55.48 0.76 -24.61 16 20 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 25 C -0.06 -1.19 9.66 -39.61 -0.38 -1.57 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 29 H 0.35 4.43 7.98 -39.29 -0.31 4.11 16 30 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 31 H 0.07 0.74 6.96 -51.93 -0.36 0.38 16 32 H 0.05 0.50 7.56 -51.93 -0.39 0.11 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.53 7.70 -51.93 -0.40 0.13 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.48 7.77 -51.93 -0.40 0.08 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.12 1.87 7.70 -52.49 -0.40 1.46 16 41 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 44 H 0.10 1.65 8.03 -52.49 -0.42 1.23 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -29.87 357.70 -10.31 -40.18 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.99 Total: 6.56 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -2.27 Total: -22.86 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -1.42 Total: -39.73 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.87 -10.31 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697329188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.377 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds