Wall clock time and date at job start Tue Mar 31 2020 07:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46948 * 2 1 4 4 N 1.46897 * 109.46925 * 119.99020 * 2 1 3 5 5 C 1.46901 * 111.00404 * 275.00271 * 4 2 1 6 6 C 1.53000 * 109.47232 * 180.02562 * 5 4 2 7 7 N 1.46892 * 109.47150 * 180.02562 * 6 5 4 8 8 C 1.47487 * 111.00017 * 74.02614 * 7 6 5 9 9 C 1.53518 * 87.93142 * 138.70212 * 8 7 6 10 10 C 1.47486 * 111.00171 * 169.99512 * 7 6 5 11 11 C 1.50690 * 109.47299 * 239.99564 * 2 1 3 12 12 C 1.38296 * 119.93124 * 279.72414 * 11 2 1 13 13 C 1.38103 * 120.07222 * 179.72709 * 12 11 2 14 14 C 1.38883 * 119.92485 * 0.54549 * 13 12 11 15 15 O 1.35754 * 120.06521 * 179.74877 * 14 13 12 16 16 C 1.34831 * 116.99680 * 174.44545 * 15 14 13 17 17 H 1.08003 * 120.00188 * 5.05658 * 16 15 14 18 18 C 1.38650 * 119.99778 * 185.05524 * 16 15 14 19 19 N 1.31560 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47005 * 89.99828 * 20 18 16 22 22 H 1.48495 * 109.47490 * 210.00008 * 20 18 16 23 23 H 1.48504 * 109.46854 * 330.00016 * 20 18 16 24 24 C 1.38879 * 119.86545 * 359.73183 * 14 13 12 25 25 C 1.38099 * 119.92617 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.47101 * 60.00558 * 1 2 3 27 27 H 1.08996 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47460 * 300.00589 * 1 2 3 29 29 H 1.00908 * 110.99574 * 151.04835 * 4 2 1 30 30 H 1.08994 * 109.46956 * 300.00032 * 5 4 2 31 31 H 1.09002 * 109.46721 * 60.00372 * 5 4 2 32 32 H 1.09007 * 109.46805 * 300.00009 * 6 5 4 33 33 H 1.09001 * 109.47415 * 59.99584 * 6 5 4 34 34 H 1.08994 * 113.47660 * 253.46980 * 8 7 6 35 35 H 1.08999 * 113.47197 * 23.94236 * 8 7 6 36 36 H 1.08996 * 114.17271 * 220.33157 * 9 8 7 37 37 H 1.09002 * 114.33985 * 87.63464 * 9 8 7 38 38 H 1.08999 * 113.47890 * 336.07012 * 10 7 6 39 39 H 1.09004 * 113.46975 * 106.52979 * 10 7 6 40 40 H 1.07999 * 119.96878 * 0.02562 * 12 11 2 41 41 H 1.07995 * 120.03919 * 180.27242 * 13 12 11 42 42 H 0.97003 * 120.00064 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.03797 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.96192 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6923 1.1995 5 6 2.0824 0.2229 2.3469 6 6 2.5961 -0.5324 3.5743 7 7 2.6583 0.3826 4.7217 8 6 1.3083 0.6731 5.2399 9 6 1.8867 0.5525 6.6568 10 6 2.9186 -0.3547 5.9723 11 6 2.0324 -0.7104 -1.2303 12 6 2.0716 -2.0925 -1.2614 13 6 2.5261 -2.7467 -2.3895 14 6 2.9548 -2.0149 -3.4893 15 8 3.4070 -2.6550 -4.5978 16 6 3.6988 -1.8908 -5.6697 17 1 3.6476 -0.8145 -5.5956 18 6 4.0645 -2.4867 -6.8670 19 7 4.1264 -3.7977 -6.9574 20 14 4.4681 -1.4280 -8.3522 21 1 5.9186 -1.1100 -8.3538 22 1 4.1214 -2.1645 -9.5941 23 1 3.6851 -0.1677 -8.2891 24 6 2.9196 -0.6270 -3.4529 25 6 2.4583 0.0210 -2.3241 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.9174 -1.1203 1.0289 30 1 2.7587 1.0464 2.1182 31 1 1.0869 0.6166 2.5525 32 1 1.9200 -1.3563 3.8032 33 1 3.5916 -0.9259 3.3685 34 1 0.9570 1.6761 4.9982 35 1 0.5767 -0.0992 5.0024 36 1 1.2360 0.0354 7.3620 37 1 2.3009 1.4795 7.0534 38 1 2.6168 -1.4012 5.9303 39 1 3.9321 -0.2226 6.3512 40 1 1.7418 -2.6610 -0.4044 41 1 2.5523 -3.8260 -2.4149 42 1 4.3827 -4.2145 -7.7949 43 1 3.2527 -0.0552 -4.3064 44 1 2.4303 1.1003 -2.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697329188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:00 Heat of formation + Delta-G solvation = 12.569792 kcal Electronic energy + Delta-G solvation = -22147.057565 eV Core-core repulsion = 18872.165334 eV Total energy + Delta-G solvation = -3274.892231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -40.98199 -40.79568 -39.06530 -36.99065 -34.35570 -33.40608 -31.83265 -30.57038 -29.34723 -27.38532 -27.02417 -26.38157 -23.87309 -23.61163 -22.40828 -21.36225 -20.73859 -19.77349 -18.85570 -17.40880 -16.97427 -16.69967 -16.55598 -16.27062 -15.95451 -15.55275 -15.50024 -15.29385 -14.83859 -14.45219 -14.38350 -14.02875 -13.75482 -13.54860 -13.45753 -13.33301 -13.01461 -12.78960 -12.69822 -12.42139 -12.33725 -12.18888 -12.13704 -11.95097 -11.78742 -11.48874 -11.42214 -11.18622 -10.79314 -9.85096 -9.78568 -9.40367 -8.92561 -8.47774 -6.15996 0.59156 0.66997 1.34342 1.43570 1.51914 2.17084 2.77517 2.88003 3.15510 3.44567 3.51673 3.60804 3.83252 3.96024 4.00078 4.09020 4.19304 4.22332 4.39883 4.44901 4.50624 4.57581 4.61503 4.62880 4.74612 4.74746 4.77363 4.87125 4.89728 4.96564 5.00026 5.03119 5.11276 5.15840 5.27959 5.28597 5.36792 5.42639 5.56326 5.70164 5.71070 6.02196 6.06751 6.16636 6.22408 6.43420 6.96865 7.77833 8.75381 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039499 B = 0.002406 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.714450 B =11634.753354 C =11780.681231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.147 3.853 3 H 0.051 0.949 4 N -0.684 5.684 5 C 0.072 3.928 6 C 0.028 3.972 7 N -0.494 5.494 8 C -0.006 4.006 9 C -0.138 4.138 10 C -0.006 4.006 11 C -0.165 4.165 12 C -0.045 4.045 13 C -0.205 4.205 14 C 0.114 3.886 15 O -0.232 6.232 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.242 4.242 25 C -0.064 4.064 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.343 0.657 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.146 0.854 41 H 0.112 0.888 42 H 0.273 0.727 43 H 0.118 0.882 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 10.367 23.381 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.038 3.962 3 H 0.069 0.931 4 N -0.316 5.316 5 C -0.057 4.057 6 C -0.101 4.101 7 N -0.217 5.217 8 C -0.135 4.135 9 C -0.176 4.176 10 C -0.134 4.134 11 C -0.166 4.166 12 C -0.063 4.063 13 C -0.224 4.224 14 C 0.064 3.936 15 O -0.139 6.139 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.177 1.177 24 C -0.261 4.261 25 C -0.082 4.082 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.164 0.836 41 H 0.130 0.870 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.108 10.258 23.109 26.010 hybrid contribution 0.699 -0.244 -1.289 1.486 sum -5.410 10.014 21.820 24.610 Atomic orbital electron populations 1.21738 0.93356 1.02158 1.01431 1.20139 0.95923 0.94518 0.85608 0.93084 1.60578 1.33613 1.33168 1.04286 1.21775 1.00585 0.93572 0.89785 1.22520 1.01102 0.94652 0.91834 1.68915 1.19009 1.31670 1.02118 1.23839 0.91743 1.02632 0.95280 1.23089 0.97914 1.00677 0.95927 1.23834 1.01413 0.97490 0.90713 1.19724 1.06607 0.93547 0.96732 1.20754 0.95648 0.94055 0.95826 1.20489 1.08607 0.99539 0.93784 1.19960 0.92855 0.92441 0.88363 1.83946 1.73631 1.36754 1.19561 1.21811 1.47699 0.91426 0.88009 0.88151 1.26603 0.96437 0.97811 1.01308 1.70187 1.46760 1.10888 1.28026 0.84582 0.79199 0.77389 0.75009 1.18789 1.19575 1.17691 1.21216 1.10269 0.93512 1.01147 1.20931 0.95693 0.99906 0.91688 0.92558 0.92677 0.91706 0.83849 0.95418 0.90794 0.93028 0.91259 0.89852 0.90814 0.89201 0.88789 0.90751 0.89761 0.83612 0.86988 0.91841 0.86396 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.39 71.98 0.68 -2.13 16 2 C 0.15 3.51 2.82 44.17 0.12 3.63 16 3 H 0.05 1.17 7.66 -2.39 -0.02 1.15 16 4 N -0.68 -14.73 5.68 -495.46 -2.82 -17.54 16 5 C 0.07 1.36 5.59 86.30 0.48 1.84 16 6 C 0.03 0.48 5.08 86.30 0.44 0.92 16 7 N -0.49 -8.19 6.41 -927.89 -5.95 -14.14 16 8 C -0.01 -0.08 7.00 83.58 0.58 0.51 16 9 C -0.14 -1.41 8.47 30.94 0.26 -1.15 16 10 C -0.01 -0.07 7.70 83.58 0.64 0.57 16 11 C -0.17 -5.12 4.72 -19.84 -0.09 -5.21 16 12 C -0.04 -1.51 8.99 22.25 0.20 -1.31 16 13 C -0.20 -8.81 9.99 22.39 0.22 -8.58 16 14 C 0.11 5.74 6.65 22.58 0.15 5.89 16 15 O -0.23 -14.13 9.76 -22.80 -0.22 -14.36 16 16 C -0.41 -24.29 9.49 67.92 0.64 -23.64 16 17 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 19 N -0.92 -56.93 13.67 21.61 0.30 -56.64 16 20 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 24 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 25 C -0.06 -2.20 9.66 22.25 0.21 -1.98 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.19 7.45 -2.39 -0.02 1.17 16 29 H 0.34 7.79 7.98 -89.69 -0.72 7.08 16 30 H 0.03 0.58 8.05 -2.39 -0.02 0.56 16 31 H 0.07 1.34 6.96 -2.39 -0.02 1.32 16 32 H 0.05 0.89 7.56 -2.38 -0.02 0.87 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.91 7.70 -2.39 -0.02 0.89 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.88 7.77 -2.39 -0.02 0.86 16 39 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.15 4.17 7.70 -2.91 -0.02 4.15 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 44 H 0.14 3.85 8.03 -2.91 -0.02 3.82 16 Total: -1.00 -68.45 357.70 -1.17 -69.62 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.27 Total: 29.85 kcal Atomic # 6 Polarization: -47.19 SS G_CDS: 5.22 Total: -41.97 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -8.47 Total: -88.32 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.22 Total: -14.36 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -68.45 -1.17 -69.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697329188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.189 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds