Wall clock time and date at job start Tue Mar 31 2020 07:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46867 * 2 1 4 4 N 1.46905 * 109.47446 * 119.99218 * 2 1 3 5 5 C 1.46900 * 110.99931 * 275.00494 * 4 2 1 6 6 C 1.53005 * 109.46857 * 179.97438 * 5 4 2 7 7 H 1.08993 * 112.74304 * 56.26490 * 6 5 4 8 8 C 1.53635 * 113.51215 * 187.07112 * 6 5 4 9 9 C 1.53511 * 83.53100 * 140.75835 * 8 6 5 10 10 N 1.47476 * 88.00307 * 334.02190 * 9 8 6 11 11 C 1.46895 * 110.99991 * 138.67167 * 10 9 8 12 12 C 1.50696 * 109.47411 * 239.99579 * 2 1 3 13 13 C 1.38307 * 119.93069 * 279.72485 * 12 2 1 14 14 C 1.38095 * 120.06895 * 179.72109 * 13 12 2 15 15 C 1.38882 * 119.92823 * 0.57528 * 14 13 12 16 16 O 1.35758 * 120.06708 * 179.67961 * 15 14 13 17 17 C 1.34827 * 116.99995 * 174.48599 * 16 15 14 18 18 H 1.08006 * 119.99896 * 5.05316 * 17 16 15 19 19 C 1.38650 * 119.99860 * 185.05765 * 17 16 15 20 20 N 1.31557 * 120.00257 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99837 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46889 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47426 * 120.00016 * 21 19 17 24 24 H 1.48508 * 109.46807 * 240.00197 * 21 19 17 25 25 C 1.38878 * 119.86463 * 359.69995 * 15 14 13 26 26 C 1.38097 * 119.92744 * 0.02562 * 25 15 14 27 27 H 1.08996 * 109.47255 * 300.00437 * 1 2 3 28 28 H 1.08993 * 109.46940 * 60.00819 * 1 2 3 29 29 H 1.09007 * 109.46882 * 180.02562 * 1 2 3 30 30 H 1.00889 * 111.00130 * 151.04618 * 4 2 1 31 31 H 1.08998 * 109.46956 * 60.00139 * 5 4 2 32 32 H 1.08993 * 109.47251 * 299.99850 * 5 4 2 33 33 H 1.08998 * 114.17385 * 27.13315 * 8 6 5 34 34 H 1.08994 * 114.20095 * 254.39000 * 8 6 5 35 35 H 1.09005 * 113.47834 * 219.22346 * 9 8 6 36 36 H 1.09006 * 113.47979 * 88.82116 * 9 8 6 37 37 H 1.08998 * 109.46944 * 81.53316 * 11 10 9 38 38 H 1.09007 * 109.47140 * 201.52682 * 11 10 9 39 39 H 1.08996 * 109.47679 * 321.52732 * 11 10 9 40 40 H 1.07996 * 119.96089 * 359.97438 * 13 12 2 41 41 H 1.08000 * 120.03806 * 180.27131 * 14 13 12 42 42 H 0.97003 * 120.00173 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.03447 * 179.97438 * 25 15 14 44 44 H 1.08003 * 119.96493 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6923 1.1995 5 6 2.0825 0.2229 2.3469 6 6 2.5951 -0.5328 3.5746 7 1 3.5624 -1.0056 3.4048 8 6 2.5353 0.2906 4.8703 9 6 2.1029 -1.0440 5.4934 10 7 1.5939 -1.4393 4.1669 11 6 1.9168 -2.8425 3.8759 12 6 2.0324 -0.7105 -1.2303 13 6 2.0716 -2.0926 -1.2615 14 6 2.5260 -2.7467 -2.3896 15 6 2.9552 -2.0149 -3.4892 16 8 3.4086 -2.6550 -4.5972 17 6 3.7016 -1.8908 -5.6687 18 1 3.6504 -0.8145 -5.5946 19 6 4.0687 -2.4867 -6.8656 20 7 4.1315 -3.7977 -6.9557 21 14 4.4754 -1.4279 -8.3499 22 1 4.3306 0.0055 -7.9900 23 1 5.8723 -1.6923 -8.7788 24 1 3.5460 -1.7552 -9.4609 25 6 2.9200 -0.6271 -3.4527 26 6 2.4591 0.0210 -2.3237 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.9173 -1.1203 1.0289 31 1 1.0870 0.6165 2.5525 32 1 2.7587 1.0465 2.1182 33 1 1.7609 1.0576 4.8763 34 1 3.5041 0.6513 5.2156 35 1 1.3205 -0.9391 6.2451 36 1 2.9385 -1.6537 5.8372 37 1 1.1877 -3.4913 4.3613 38 1 1.8881 -3.0060 2.7985 39 1 2.9140 -3.0714 4.2517 40 1 1.7426 -2.6609 -0.4041 41 1 2.5523 -3.8261 -2.4149 42 1 4.3887 -4.2145 -7.7930 43 1 3.2534 -0.0553 -4.3061 44 1 2.4311 1.1003 -2.2949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712546266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:25 Heat of formation + Delta-G solvation = 33.964752 kcal Electronic energy + Delta-G solvation = -22583.939590 eV Core-core repulsion = 19309.975114 eV Total energy + Delta-G solvation = -3273.964476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34598 -39.16021 -37.41015 -35.33547 -32.34040 -31.40570 -30.56276 -30.13406 -27.91747 -27.02562 -25.38214 -24.32048 -23.11533 -22.21585 -21.52979 -20.14671 -19.63910 -17.92495 -17.03153 -16.28336 -16.09566 -15.40703 -15.15828 -14.64265 -14.44128 -14.07567 -14.03214 -13.66939 -13.44406 -13.31778 -13.19998 -12.77651 -12.56438 -12.28121 -11.99761 -11.82498 -11.73620 -11.67956 -11.56125 -11.28138 -11.15806 -11.02021 -10.86314 -10.61014 -10.53665 -10.41847 -10.18347 -9.32978 -9.03840 -8.83070 -8.28365 -8.15925 -7.16747 -6.45369 -4.04196 2.23458 2.31565 3.11551 3.13236 3.18669 3.78922 3.96250 4.09466 4.32688 4.57048 4.69125 4.98197 5.05677 5.08070 5.10693 5.16088 5.20548 5.30696 5.33418 5.40950 5.46256 5.52683 5.58731 5.70072 5.72005 5.76263 5.89251 5.90533 5.93778 6.05969 6.10258 6.23883 6.25663 6.41571 6.53798 6.74417 6.88388 6.92029 7.05377 7.09363 7.28099 7.43997 7.45801 7.58189 7.84392 7.99937 9.00508 9.71170 10.72811 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.002770 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.449195 B =10104.867042 C =10435.811305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.144 3.856 3 H 0.038 0.962 4 N -0.679 5.679 5 C 0.076 3.924 6 C 0.031 3.969 7 H 0.075 0.925 8 C -0.143 4.143 9 C -0.009 4.009 10 N -0.457 5.457 11 C -0.009 4.009 12 C -0.191 4.191 13 C -0.055 4.055 14 C -0.195 4.195 15 C 0.155 3.845 16 O -0.179 6.179 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.235 4.235 26 C -0.066 4.066 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.340 0.660 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.028 0.972 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 7.708 19.954 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.035 3.965 3 H 0.056 0.944 4 N -0.310 5.310 5 C -0.054 4.054 6 C -0.079 4.079 7 H 0.092 0.908 8 C -0.181 4.181 9 C -0.138 4.138 10 N -0.180 5.180 11 C -0.158 4.158 12 C -0.192 4.192 13 C -0.074 4.074 14 C -0.214 4.214 15 C 0.101 3.899 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.254 4.254 26 C -0.085 4.085 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.158 0.842 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.047 0.953 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.179 7.065 19.700 21.342 hybrid contribution 1.889 0.796 -0.901 2.239 sum -2.291 7.861 18.798 20.504 Atomic orbital electron populations 1.21742 0.94518 1.02271 1.00242 1.20129 0.95206 0.94289 0.86887 0.94355 1.60560 1.33163 1.33046 1.04236 1.21915 1.00793 0.93166 0.89496 1.23430 0.94964 0.94789 0.94668 0.90755 1.23208 1.02094 0.96961 0.95823 1.23799 0.99251 0.96248 0.94475 1.68868 1.40838 1.04533 1.03726 1.22863 0.98796 0.90691 1.03460 1.19289 1.09984 0.93809 0.96153 1.20486 0.97088 0.93390 0.96396 1.20255 1.08404 0.99379 0.93410 1.19422 0.91099 0.90924 0.88438 1.83982 1.70690 1.35334 1.18213 1.21368 1.47186 0.90766 0.87433 0.89066 1.25289 0.96834 0.96294 0.98137 1.70049 1.44283 1.08656 1.26805 0.85654 0.78384 0.79248 0.80173 1.19131 1.20153 1.20125 1.21116 1.09878 0.94418 0.99978 1.20585 0.97009 0.98103 0.92770 0.93477 0.92895 0.92048 0.84179 0.90300 0.95144 0.88832 0.90799 0.89924 0.91688 0.91610 0.89920 0.95336 0.86353 0.86636 0.92078 0.85665 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.39 37.16 0.35 -1.36 16 2 C 0.14 1.96 2.82 -68.86 -0.19 1.77 16 3 H 0.04 0.51 7.66 -51.93 -0.40 0.12 16 4 N -0.68 -8.30 5.68 -107.95 -0.61 -8.92 16 5 C 0.08 0.79 5.50 -3.82 -0.02 0.77 16 6 C 0.03 0.29 3.27 -71.38 -0.23 0.06 16 7 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 8 C -0.14 -1.07 8.02 -26.14 -0.21 -1.28 16 9 C -0.01 -0.07 7.69 -7.56 -0.06 -0.13 16 10 N -0.46 -4.65 6.52 -244.62 -1.60 -6.25 16 11 C -0.01 -0.09 9.67 60.06 0.58 0.49 16 12 C -0.19 -3.21 4.72 -104.58 -0.49 -3.70 16 13 C -0.06 -0.98 8.99 -39.61 -0.36 -1.34 16 14 C -0.20 -4.13 9.99 -39.40 -0.39 -4.53 16 15 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 16 O -0.18 -5.13 9.76 0.03 0.00 -5.13 16 17 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 18 H 0.09 2.38 5.20 -52.48 -0.27 2.10 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 21 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 26 C -0.07 -1.20 9.66 -39.61 -0.38 -1.59 16 27 H 0.05 0.56 7.45 -51.93 -0.39 0.18 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.34 4.30 7.98 -39.30 -0.31 3.98 16 31 H 0.08 0.88 7.44 -51.93 -0.39 0.49 16 32 H 0.03 0.31 8.05 -51.93 -0.42 -0.11 16 33 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.47 7.58 -51.93 -0.39 0.08 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.25 7.55 -51.93 -0.39 -0.14 16 40 H 0.12 1.88 7.70 -52.49 -0.40 1.48 16 41 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 44 H 0.10 1.63 8.03 -52.48 -0.42 1.21 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -29.90 358.54 -9.91 -39.82 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.01 Total: 6.67 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.84 Total: -22.50 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -1.45 Total: -39.82 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: 0.00 Total: -5.13 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.90 -9.91 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712546266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.781 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds