Wall clock time and date at job start Tue Mar 31 2020 07:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46867 * 2 1 4 4 N 1.46905 * 109.47446 * 119.99218 * 2 1 3 5 5 C 1.46900 * 110.99931 * 275.00494 * 4 2 1 6 6 C 1.53005 * 109.46857 * 179.97438 * 5 4 2 7 7 H 1.08993 * 112.74304 * 56.26490 * 6 5 4 8 8 C 1.53635 * 113.51215 * 187.07112 * 6 5 4 9 9 C 1.53511 * 83.53100 * 140.75835 * 8 6 5 10 10 N 1.47476 * 88.00307 * 334.02190 * 9 8 6 11 11 C 1.46895 * 110.99991 * 138.67167 * 10 9 8 12 12 C 1.50696 * 109.47411 * 239.99579 * 2 1 3 13 13 C 1.38307 * 119.93069 * 279.72485 * 12 2 1 14 14 C 1.38095 * 120.06895 * 179.72109 * 13 12 2 15 15 C 1.38882 * 119.92823 * 0.57528 * 14 13 12 16 16 O 1.35758 * 120.06708 * 179.67961 * 15 14 13 17 17 C 1.34827 * 116.99995 * 174.48599 * 16 15 14 18 18 H 1.08006 * 119.99896 * 5.05316 * 17 16 15 19 19 C 1.38650 * 119.99860 * 185.05765 * 17 16 15 20 20 N 1.31557 * 120.00257 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99837 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46889 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47426 * 120.00016 * 21 19 17 24 24 H 1.48508 * 109.46807 * 240.00197 * 21 19 17 25 25 C 1.38878 * 119.86463 * 359.69995 * 15 14 13 26 26 C 1.38097 * 119.92744 * 0.02562 * 25 15 14 27 27 H 1.08996 * 109.47255 * 300.00437 * 1 2 3 28 28 H 1.08993 * 109.46940 * 60.00819 * 1 2 3 29 29 H 1.09007 * 109.46882 * 180.02562 * 1 2 3 30 30 H 1.00889 * 111.00130 * 151.04618 * 4 2 1 31 31 H 1.08998 * 109.46956 * 60.00139 * 5 4 2 32 32 H 1.08993 * 109.47251 * 299.99850 * 5 4 2 33 33 H 1.08998 * 114.17385 * 27.13315 * 8 6 5 34 34 H 1.08994 * 114.20095 * 254.39000 * 8 6 5 35 35 H 1.09005 * 113.47834 * 219.22346 * 9 8 6 36 36 H 1.09006 * 113.47979 * 88.82116 * 9 8 6 37 37 H 1.08998 * 109.46944 * 81.53316 * 11 10 9 38 38 H 1.09007 * 109.47140 * 201.52682 * 11 10 9 39 39 H 1.08996 * 109.47679 * 321.52732 * 11 10 9 40 40 H 1.07996 * 119.96089 * 359.97438 * 13 12 2 41 41 H 1.08000 * 120.03806 * 180.27131 * 14 13 12 42 42 H 0.97003 * 120.00173 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.03447 * 179.97438 * 25 15 14 44 44 H 1.08003 * 119.96493 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6923 1.1995 5 6 2.0825 0.2229 2.3469 6 6 2.5951 -0.5328 3.5746 7 1 3.5624 -1.0056 3.4048 8 6 2.5353 0.2906 4.8703 9 6 2.1029 -1.0440 5.4934 10 7 1.5939 -1.4393 4.1669 11 6 1.9168 -2.8425 3.8759 12 6 2.0324 -0.7105 -1.2303 13 6 2.0716 -2.0926 -1.2615 14 6 2.5260 -2.7467 -2.3896 15 6 2.9552 -2.0149 -3.4892 16 8 3.4086 -2.6550 -4.5972 17 6 3.7016 -1.8908 -5.6687 18 1 3.6504 -0.8145 -5.5946 19 6 4.0687 -2.4867 -6.8656 20 7 4.1315 -3.7977 -6.9557 21 14 4.4754 -1.4279 -8.3499 22 1 4.3306 0.0055 -7.9900 23 1 5.8723 -1.6923 -8.7788 24 1 3.5460 -1.7552 -9.4609 25 6 2.9200 -0.6271 -3.4527 26 6 2.4591 0.0210 -2.3237 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.9173 -1.1203 1.0289 31 1 1.0870 0.6165 2.5525 32 1 2.7587 1.0465 2.1182 33 1 1.7609 1.0576 4.8763 34 1 3.5041 0.6513 5.2156 35 1 1.3205 -0.9391 6.2451 36 1 2.9385 -1.6537 5.8372 37 1 1.1877 -3.4913 4.3613 38 1 1.8881 -3.0060 2.7985 39 1 2.9140 -3.0714 4.2517 40 1 1.7426 -2.6609 -0.4041 41 1 2.5523 -3.8261 -2.4149 42 1 4.3887 -4.2145 -7.7930 43 1 3.2534 -0.0553 -4.3061 44 1 2.4311 1.1003 -2.2949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712546266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:14 Heat of formation + Delta-G solvation = 13.095561 kcal Electronic energy + Delta-G solvation = -22584.844547 eV Core-core repulsion = 19309.975114 eV Total energy + Delta-G solvation = -3274.869432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 14.79 seconds Orbital eigenvalues (eV) -41.09527 -40.79120 -38.96099 -36.68346 -34.29143 -32.52409 -31.80396 -31.30443 -29.39779 -27.88573 -27.35177 -25.01669 -24.15486 -23.76880 -22.81262 -21.37078 -20.51806 -19.75683 -18.82946 -17.25515 -17.01601 -16.54274 -16.27917 -16.15111 -15.68766 -15.58344 -15.50644 -15.13442 -14.76515 -14.46192 -14.13344 -13.99668 -13.91796 -13.78104 -13.50980 -13.05567 -12.89195 -12.76467 -12.54315 -12.40409 -12.32846 -12.27457 -12.11731 -12.04851 -11.69587 -11.66685 -11.21155 -11.17200 -10.79361 -9.77561 -9.74103 -9.24774 -8.90920 -8.47702 -6.15833 0.60161 0.68574 1.34510 1.42867 1.52890 2.17110 2.81013 3.06141 3.15930 3.30407 3.52448 3.64254 3.89024 4.00075 4.11056 4.22288 4.29310 4.31792 4.43095 4.46016 4.48782 4.58363 4.60844 4.66276 4.74645 4.76129 4.83688 4.91766 4.99257 5.00991 5.05685 5.11207 5.14444 5.16989 5.29579 5.31361 5.45162 5.53085 5.58684 5.71342 5.73825 6.02794 6.20223 6.22548 6.28327 6.52551 6.97220 7.78612 8.75904 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.002770 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.449195 B =10104.867042 C =10435.811305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.148 3.852 3 H 0.054 0.946 4 N -0.682 5.682 5 C 0.079 3.921 6 C 0.029 3.971 7 H 0.074 0.926 8 C -0.132 4.132 9 C -0.008 4.008 10 N -0.479 5.479 11 C -0.006 4.006 12 C -0.163 4.163 13 C -0.045 4.045 14 C -0.206 4.206 15 C 0.114 3.886 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.251 1.251 23 H -0.268 1.268 24 H -0.269 1.269 25 C -0.242 4.242 26 C -0.063 4.063 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.338 0.662 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.143 0.857 41 H 0.110 0.890 42 H 0.272 0.728 43 H 0.118 0.882 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 10.439 22.153 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.039 3.961 3 H 0.072 0.928 4 N -0.313 5.313 5 C -0.050 4.050 6 C -0.081 4.081 7 H 0.092 0.908 8 C -0.170 4.170 9 C -0.137 4.137 10 N -0.201 5.201 11 C -0.155 4.155 12 C -0.164 4.164 13 C -0.063 4.063 14 C -0.225 4.225 15 C 0.064 3.936 16 O -0.140 6.140 17 C -0.488 4.488 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.174 1.174 23 H -0.193 1.193 24 H -0.194 1.194 25 C -0.261 4.261 26 C -0.082 4.082 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.160 0.840 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.642 9.826 21.964 24.506 hybrid contribution 1.891 0.020 -1.207 2.244 sum -2.751 9.846 20.757 23.138 Atomic orbital electron populations 1.21703 0.93779 1.01795 1.01165 1.20132 0.95628 0.94573 0.85745 0.92836 1.60559 1.33152 1.33516 1.04082 1.21934 1.00897 0.93136 0.89024 1.23452 0.94632 0.95078 0.94934 0.90828 1.23186 1.02997 0.96610 0.94194 1.23841 0.99610 0.96572 0.93669 1.68868 1.41534 1.04551 1.05163 1.22802 0.99277 0.90956 1.02461 1.19756 1.06310 0.93448 0.96853 1.20725 0.95676 0.94173 0.95708 1.20473 1.08708 0.99447 0.93860 1.19940 0.92885 0.92452 0.88311 1.83946 1.73641 1.36801 1.19638 1.21855 1.47510 0.91430 0.88045 0.88122 1.26598 0.96454 0.97786 1.01294 1.70193 1.46927 1.10929 1.27956 0.84525 0.78345 0.77815 0.75486 1.17447 1.19295 1.19374 1.21214 1.10269 0.93459 1.01156 1.20938 0.95685 0.99942 0.91620 0.91858 0.92768 0.93230 0.84375 0.90627 0.94216 0.88532 0.89266 0.89516 0.90947 0.91579 0.91406 0.94600 0.83973 0.87196 0.91850 0.86424 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.39 71.98 0.68 -2.22 16 2 C 0.15 3.50 2.82 44.17 0.12 3.63 16 3 H 0.05 1.17 7.66 -2.39 -0.02 1.15 16 4 N -0.68 -14.55 5.68 -495.44 -2.82 -17.37 16 5 C 0.08 1.39 5.50 86.30 0.47 1.87 16 6 C 0.03 0.46 3.27 42.22 0.14 0.59 16 7 H 0.07 1.18 7.88 -2.39 -0.02 1.17 16 8 C -0.13 -1.55 8.02 30.98 0.25 -1.30 16 9 C -0.01 -0.11 7.69 83.57 0.64 0.53 16 10 N -0.48 -8.64 6.52 -927.84 -6.05 -14.69 16 11 C -0.01 -0.10 9.67 127.69 1.23 1.13 16 12 C -0.16 -5.03 4.72 -19.83 -0.09 -5.12 16 13 C -0.04 -1.52 8.99 22.25 0.20 -1.32 16 14 C -0.21 -8.90 9.99 22.39 0.22 -8.67 16 15 C 0.11 5.75 6.65 22.58 0.15 5.90 16 16 O -0.23 -14.23 9.76 -22.79 -0.22 -14.45 16 17 C -0.41 -24.22 9.49 67.92 0.64 -23.57 16 18 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 19 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 20 N -0.92 -57.10 13.67 21.61 0.30 -56.80 16 21 Si 1.02 43.12 29.55 68.60 2.03 45.15 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 C -0.24 -10.54 9.17 22.39 0.21 -10.34 16 26 C -0.06 -2.17 9.66 22.25 0.21 -1.95 16 27 H 0.06 1.28 7.45 -2.39 -0.02 1.26 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.34 7.57 7.98 -89.70 -0.72 6.86 16 31 H 0.08 1.41 7.44 -2.39 -0.02 1.39 16 32 H 0.04 0.64 8.05 -2.39 -0.02 0.62 16 33 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.07 0.86 7.58 -2.38 -0.02 0.84 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.04 0.57 7.55 -2.39 -0.02 0.55 16 40 H 0.14 4.21 7.70 -2.91 -0.02 4.19 16 41 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 44 H 0.14 3.80 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -68.73 358.54 -0.95 -69.68 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.27 Total: 30.24 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 5.55 Total: -41.76 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -8.57 Total: -88.86 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.22 Total: -14.45 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.73 -0.95 -69.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712546266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.773 kcal (2) G-P(sol) polarization free energy of solvation -68.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.79 seconds