Wall clock time and date at job start Tue Mar 31 2020 07:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47545 * 2 1 4 4 N 1.46904 * 109.47216 * 119.99757 * 2 1 3 5 5 C 1.46904 * 110.99775 * 275.00104 * 4 2 1 6 6 C 1.50705 * 109.46596 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00370 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99447 * 179.72594 * 6 5 4 9 9 C 1.46502 * 119.99424 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46820 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00034 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00364 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99579 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00384 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46944 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46820 * 119.99774 * 14 12 10 17 17 H 1.48497 * 109.47079 * 239.99881 * 14 12 10 18 18 C 1.52996 * 109.47424 * 239.99790 * 2 1 3 19 19 H 1.09004 * 109.46774 * 304.03803 * 18 2 1 20 20 C 1.52996 * 109.47165 * 64.03744 * 18 2 1 21 21 C 1.50706 * 109.47450 * 184.04121 * 18 2 1 22 22 C 1.38239 * 119.99543 * 303.92217 * 21 18 2 23 23 C 1.38237 * 119.99443 * 179.78763 * 22 21 18 24 24 C 1.38232 * 120.00180 * 0.44282 * 23 22 21 25 25 C 1.38242 * 119.99955 * 359.81419 * 24 23 22 26 26 C 1.38232 * 120.00057 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46664 * 54.31507 * 1 2 3 28 28 H 1.08996 * 109.46961 * 174.31835 * 1 2 3 29 29 H 1.09000 * 109.47326 * 294.31999 * 1 2 3 30 30 H 1.00902 * 110.99975 * 38.94969 * 4 2 1 31 31 H 1.08996 * 109.47360 * 60.00016 * 5 4 2 32 32 H 1.08997 * 109.46899 * 299.99559 * 5 4 2 33 33 H 0.96994 * 119.99779 * 359.97438 * 8 6 5 34 34 H 1.08993 * 109.47162 * 299.99335 * 9 8 6 35 35 H 1.08994 * 109.47194 * 60.00260 * 9 8 6 36 36 H 0.97000 * 120.00081 * 179.97438 * 13 12 10 37 37 H 1.09004 * 109.47226 * 60.00336 * 20 18 2 38 38 H 1.09005 * 109.47454 * 179.97438 * 20 18 2 39 39 H 1.09000 * 109.47131 * 300.00583 * 20 18 2 40 40 H 1.07992 * 120.00276 * 0.02562 * 22 21 18 41 41 H 1.08000 * 120.00000 * 180.27535 * 23 22 21 42 42 H 1.08001 * 120.00061 * 179.83387 * 24 23 22 43 43 H 1.07998 * 120.00029 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.00185 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5217 3.5561 7 8 2.8677 -1.6985 3.4703 8 7 2.7330 0.1219 4.7313 9 6 3.2243 -0.6016 5.9066 10 6 3.2956 0.3389 7.0819 11 1 3.0044 1.3724 6.9650 12 6 3.7325 -0.1198 8.3065 13 7 4.0865 -1.3783 8.4490 14 14 3.8215 1.0462 9.7632 15 1 3.3719 2.3978 9.3435 16 1 2.9424 0.5472 10.8511 17 1 5.2215 1.1206 10.2529 18 6 2.0400 -0.7213 -1.2492 19 1 1.6188 -1.7259 -1.2860 20 6 1.6147 0.0562 -2.4963 21 6 3.5437 -0.8086 -1.2001 22 6 4.2988 0.3417 -1.0666 23 6 5.6779 0.2612 -1.0172 24 6 6.3023 -0.9686 -1.1105 25 6 5.5474 -2.1183 -1.2493 26 6 4.1681 -2.0383 -1.2943 27 1 -0.3633 0.5995 -0.8347 28 1 -0.3633 -1.0226 -0.1017 29 1 -0.3634 0.4232 0.9365 30 1 1.4495 -1.4979 1.4102 31 1 1.0871 0.6164 2.5525 32 1 2.7588 1.0463 2.1182 33 1 2.5132 1.0642 4.7987 34 1 2.5454 -1.4222 6.1382 35 1 4.2177 -0.9994 5.6993 36 1 4.3943 -1.7010 9.3105 37 1 2.0359 1.0608 -2.4595 38 1 1.9785 -0.4574 -3.3863 39 1 0.5271 0.1193 -2.5318 40 1 3.8112 1.3027 -0.9971 41 1 6.2677 1.1593 -0.9085 42 1 7.3799 -1.0312 -1.0746 43 1 6.0352 -3.0791 -1.3218 44 1 3.5783 -2.9365 -1.4024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754179381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:15 Heat of formation + Delta-G solvation = -27.938168 kcal Electronic energy + Delta-G solvation = -22754.142875 eV Core-core repulsion = 19477.494087 eV Total energy + Delta-G solvation = -3276.648788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.69281 -38.74143 -37.09651 -34.18185 -33.56134 -32.28318 -30.77147 -30.46030 -28.68863 -27.55069 -25.79140 -24.07225 -22.70636 -22.28846 -21.62596 -20.02425 -19.48714 -17.26610 -16.77879 -15.86948 -15.72816 -15.28382 -15.13306 -14.93311 -14.64255 -14.28567 -14.00903 -13.86172 -13.58030 -13.21484 -12.96349 -12.75821 -12.50881 -12.35917 -12.23565 -11.97439 -11.91587 -11.71607 -11.43791 -11.40330 -11.12805 -10.93176 -10.88553 -10.66114 -10.55982 -10.30500 -9.35987 -8.98568 -8.74536 -8.71892 -8.49866 -8.25275 -7.82268 -6.15160 -4.21901 1.55228 1.57549 3.24056 3.30952 3.34077 3.45123 3.83537 3.94160 4.31374 4.51583 4.53746 4.80184 5.02307 5.07668 5.11499 5.16485 5.20890 5.23897 5.28384 5.29356 5.42042 5.44796 5.54253 5.61624 5.63838 5.67486 5.74910 5.79856 5.83659 6.01627 6.03660 6.18619 6.19595 6.61416 6.66291 6.78206 7.01581 7.17193 7.35488 7.47102 7.50373 7.55424 7.70268 7.99451 8.67717 8.81702 9.17045 9.45028 10.95144 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003259 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.839895 B = 8588.720439 C = 9364.855150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 H 0.078 0.922 4 N -0.660 5.660 5 C 0.042 3.958 6 C 0.496 3.504 7 O -0.542 6.542 8 N -0.716 5.716 9 C 0.251 3.749 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.043 4.043 19 H 0.077 0.923 20 C -0.144 4.144 21 C -0.043 4.043 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.117 4.117 26 C -0.111 4.111 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.350 0.650 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.389 0.611 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 4.831 -22.538 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.019 4.019 3 H 0.096 0.904 4 N -0.292 5.292 5 C -0.090 4.090 6 C 0.280 3.720 7 O -0.420 6.420 8 N -0.365 5.365 9 C 0.130 3.870 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.062 4.062 19 H 0.095 0.905 20 C -0.202 4.202 21 C -0.043 4.043 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.135 4.135 26 C -0.129 4.129 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.169 0.831 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.221 0.779 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.283 3.908 -22.580 23.149 hybrid contribution -0.885 1.112 1.331 1.947 sum -4.168 5.019 -21.249 22.228 Atomic orbital electron populations 1.22586 0.97259 1.02455 1.02211 1.21634 0.92169 0.97873 0.90239 0.90366 1.60166 1.57932 1.08863 1.02221 1.21836 1.00387 0.96143 0.90653 1.20372 0.79372 0.87931 0.84280 1.90663 1.50570 1.16140 1.84630 1.46441 1.65711 1.13653 1.10707 1.19073 0.94975 0.92422 0.80529 1.21271 1.45965 0.96375 0.94421 0.91897 1.24960 0.94866 0.95330 0.98926 1.69987 1.43129 1.14273 1.24894 0.86367 0.77826 0.80698 0.82050 1.19648 1.20814 1.20788 1.20182 0.91826 1.00199 0.93980 0.90453 1.21877 1.01130 1.00252 0.96901 1.19503 0.94448 0.93031 0.97309 1.20815 0.93652 0.97780 1.00877 1.21046 0.94747 0.97528 1.00427 1.21048 0.99549 0.92866 1.01322 1.21071 0.94136 0.98158 1.00165 1.20949 0.94468 0.96970 1.00479 0.91826 0.92206 0.92515 0.83064 0.93103 0.88887 0.77894 0.95678 0.95591 0.92523 0.92478 0.92414 0.92205 0.86939 0.86670 0.86686 0.86581 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 8.77 37.16 0.33 -1.25 16 2 C 0.09 0.92 1.88 -67.71 -0.13 0.79 16 3 H 0.08 0.77 6.99 -51.93 -0.36 0.41 16 4 N -0.66 -8.97 5.33 -107.99 -0.58 -9.55 16 5 C 0.04 0.61 5.96 -4.97 -0.03 0.58 16 6 C 0.50 10.05 7.87 -10.98 -0.09 9.96 16 7 O -0.54 -13.34 16.20 5.56 0.09 -13.25 16 8 N -0.72 -15.29 5.55 -61.47 -0.34 -15.63 16 9 C 0.25 6.77 5.43 -5.19 -0.03 6.75 16 10 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 11 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 14 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.04 -0.41 2.32 -91.77 -0.21 -0.63 16 19 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 20 C -0.14 -1.09 8.78 37.16 0.33 -0.76 16 21 C -0.04 -0.50 4.27 -104.62 -0.45 -0.95 16 22 C -0.11 -1.33 8.77 -39.58 -0.35 -1.68 16 23 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 24 C -0.13 -1.58 10.05 -39.58 -0.40 -1.97 16 25 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 26 C -0.11 -1.37 9.67 -39.59 -0.38 -1.76 16 27 H 0.06 0.45 6.83 -51.93 -0.35 0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 7.34 -51.93 -0.38 0.12 16 30 H 0.35 5.02 8.18 -39.29 -0.32 4.70 16 31 H 0.05 0.62 7.35 -51.93 -0.38 0.24 16 32 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 33 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.06 0.42 7.63 -51.93 -0.40 0.02 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 40 H 0.11 1.14 7.16 -52.49 -0.38 0.76 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.28 7.95 -52.49 -0.42 0.86 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -32.97 362.82 -9.26 -42.23 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.00 Total: 8.54 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.62 Total: -8.13 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.18 Total: -50.83 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.97 -9.26 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754179381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.293 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds