Wall clock time and date at job start Tue Mar 31 2020 07:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47545 * 2 1 4 4 N 1.46904 * 109.47216 * 119.99757 * 2 1 3 5 5 C 1.46904 * 110.99775 * 275.00104 * 4 2 1 6 6 C 1.50705 * 109.46596 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00370 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99447 * 179.72594 * 6 5 4 9 9 C 1.46502 * 119.99424 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46820 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00034 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00364 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99579 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00384 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46944 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46820 * 119.99774 * 14 12 10 17 17 H 1.48497 * 109.47079 * 239.99881 * 14 12 10 18 18 C 1.52996 * 109.47424 * 239.99790 * 2 1 3 19 19 H 1.09004 * 109.46774 * 304.03803 * 18 2 1 20 20 C 1.52996 * 109.47165 * 64.03744 * 18 2 1 21 21 C 1.50706 * 109.47450 * 184.04121 * 18 2 1 22 22 C 1.38239 * 119.99543 * 303.92217 * 21 18 2 23 23 C 1.38237 * 119.99443 * 179.78763 * 22 21 18 24 24 C 1.38232 * 120.00180 * 0.44282 * 23 22 21 25 25 C 1.38242 * 119.99955 * 359.81419 * 24 23 22 26 26 C 1.38232 * 120.00057 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46664 * 54.31507 * 1 2 3 28 28 H 1.08996 * 109.46961 * 174.31835 * 1 2 3 29 29 H 1.09000 * 109.47326 * 294.31999 * 1 2 3 30 30 H 1.00902 * 110.99975 * 38.94969 * 4 2 1 31 31 H 1.08996 * 109.47360 * 60.00016 * 5 4 2 32 32 H 1.08997 * 109.46899 * 299.99559 * 5 4 2 33 33 H 0.96994 * 119.99779 * 359.97438 * 8 6 5 34 34 H 1.08993 * 109.47162 * 299.99335 * 9 8 6 35 35 H 1.08994 * 109.47194 * 60.00260 * 9 8 6 36 36 H 0.97000 * 120.00081 * 179.97438 * 13 12 10 37 37 H 1.09004 * 109.47226 * 60.00336 * 20 18 2 38 38 H 1.09005 * 109.47454 * 179.97438 * 20 18 2 39 39 H 1.09000 * 109.47131 * 300.00583 * 20 18 2 40 40 H 1.07992 * 120.00276 * 0.02562 * 22 21 18 41 41 H 1.08000 * 120.00000 * 180.27535 * 23 22 21 42 42 H 1.08001 * 120.00061 * 179.83387 * 24 23 22 43 43 H 1.07998 * 120.00029 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.00185 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5217 3.5561 7 8 2.8677 -1.6985 3.4703 8 7 2.7330 0.1219 4.7313 9 6 3.2243 -0.6016 5.9066 10 6 3.2956 0.3389 7.0819 11 1 3.0044 1.3724 6.9650 12 6 3.7325 -0.1198 8.3065 13 7 4.0865 -1.3783 8.4490 14 14 3.8215 1.0462 9.7632 15 1 3.3719 2.3978 9.3435 16 1 2.9424 0.5472 10.8511 17 1 5.2215 1.1206 10.2529 18 6 2.0400 -0.7213 -1.2492 19 1 1.6188 -1.7259 -1.2860 20 6 1.6147 0.0562 -2.4963 21 6 3.5437 -0.8086 -1.2001 22 6 4.2988 0.3417 -1.0666 23 6 5.6779 0.2612 -1.0172 24 6 6.3023 -0.9686 -1.1105 25 6 5.5474 -2.1183 -1.2493 26 6 4.1681 -2.0383 -1.2943 27 1 -0.3633 0.5995 -0.8347 28 1 -0.3633 -1.0226 -0.1017 29 1 -0.3634 0.4232 0.9365 30 1 1.4495 -1.4979 1.4102 31 1 1.0871 0.6164 2.5525 32 1 2.7588 1.0463 2.1182 33 1 2.5132 1.0642 4.7987 34 1 2.5454 -1.4222 6.1382 35 1 4.2177 -0.9994 5.6993 36 1 4.3943 -1.7010 9.3105 37 1 2.0359 1.0608 -2.4595 38 1 1.9785 -0.4574 -3.3863 39 1 0.5271 0.1193 -2.5318 40 1 3.8112 1.3027 -0.9971 41 1 6.2677 1.1593 -0.9085 42 1 7.3799 -1.0312 -1.0746 43 1 6.0352 -3.0791 -1.3218 44 1 3.5783 -2.9365 -1.4024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754179381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:14 Heat of formation + Delta-G solvation = -50.081023 kcal Electronic energy + Delta-G solvation = -22755.103061 eV Core-core repulsion = 19477.494087 eV Total energy + Delta-G solvation = -3277.608975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72557 -40.20964 -38.07345 -36.11825 -34.60005 -34.30362 -31.66714 -31.39250 -29.89169 -28.99144 -27.06730 -25.12940 -24.12199 -23.56616 -22.52896 -21.43013 -20.66769 -18.94584 -17.83954 -17.46668 -17.17785 -16.69510 -16.33149 -16.10490 -15.98831 -15.37507 -15.22103 -15.05136 -14.58649 -14.35486 -14.11090 -14.05945 -13.86479 -13.67261 -13.38160 -13.12855 -13.00790 -12.88775 -12.75368 -12.59866 -12.39374 -12.22669 -12.21352 -11.95618 -11.46465 -11.45713 -11.35720 -10.81879 -10.69141 -9.81182 -9.66776 -9.39689 -9.23459 -8.29576 -6.46351 0.64730 0.65325 1.42696 1.44110 1.57577 1.82197 2.30178 2.52073 3.03562 3.05317 3.32570 3.76247 3.97874 3.99599 4.20700 4.24963 4.33401 4.35567 4.38092 4.48197 4.52527 4.58336 4.63318 4.73176 4.82525 4.88196 4.99714 5.11384 5.12224 5.13661 5.24031 5.26778 5.30936 5.37166 5.44489 5.49555 5.69912 5.71669 5.74906 5.85087 5.89070 6.10600 6.28934 6.42524 6.65517 6.96357 7.23532 7.54565 8.82992 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003259 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.839895 B = 8588.720439 C = 9364.855150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.095 3.905 3 H 0.088 0.912 4 N -0.679 5.679 5 C 0.061 3.939 6 C 0.492 3.508 7 O -0.592 6.592 8 N -0.710 5.710 9 C 0.268 3.732 10 C -0.554 4.554 11 H 0.085 0.915 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.986 3.014 15 H -0.252 1.252 16 H -0.278 1.278 17 H -0.279 1.279 18 C -0.040 4.040 19 H 0.072 0.928 20 C -0.138 4.138 21 C -0.049 4.049 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.133 4.133 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.342 0.658 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.408 0.592 34 H -0.014 1.014 35 H -0.017 1.017 36 H 0.268 0.732 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 7.844 -23.110 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.014 4.014 3 H 0.106 0.894 4 N -0.310 5.310 5 C -0.072 4.072 6 C 0.279 3.721 7 O -0.473 6.473 8 N -0.361 5.361 9 C 0.145 3.855 10 C -0.592 4.592 11 H 0.103 0.897 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.809 3.191 15 H -0.175 1.175 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.059 4.059 19 H 0.091 0.909 20 C -0.196 4.196 21 C -0.049 4.049 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.165 4.165 25 C -0.153 4.153 26 C -0.151 4.151 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.243 0.757 34 H 0.004 0.996 35 H 0.001 0.999 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.537 6.971 -23.198 24.644 hybrid contribution -0.484 0.097 1.435 1.517 sum -5.022 7.068 -21.763 23.427 Atomic orbital electron populations 1.22524 0.95668 1.02770 1.02979 1.21695 0.93362 0.97845 0.88541 0.89351 1.60171 1.58873 1.09055 1.02939 1.21727 1.02020 0.95521 0.87887 1.21511 0.77775 0.87576 0.85262 1.90640 1.52440 1.18723 1.85457 1.46183 1.65763 1.14359 1.09797 1.18494 0.91880 0.92132 0.83032 1.21657 1.45816 0.97217 0.94529 0.89740 1.26097 0.94038 0.97099 1.02528 1.70152 1.44149 1.16800 1.25977 0.85094 0.77816 0.78798 0.77402 1.17504 1.20414 1.20509 1.20203 0.90358 1.00447 0.94900 0.90947 1.21838 1.02136 1.00072 0.95511 1.19797 0.95767 0.92770 0.96558 1.21086 0.93715 0.98553 1.00650 1.21372 0.95366 0.98073 1.00135 1.21324 1.00442 0.93101 1.01667 1.21334 0.94529 0.98923 1.00469 1.21199 0.94795 0.97799 1.01297 0.89818 0.92453 0.92659 0.83890 0.89946 0.86793 0.75678 0.99614 0.99942 0.92276 0.91850 0.92550 0.90634 0.85090 0.85012 0.85429 0.85683 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.77 71.98 0.63 -1.87 16 2 C 0.09 1.66 1.88 44.91 0.08 1.74 16 3 H 0.09 1.40 6.99 -2.38 -0.02 1.38 16 4 N -0.68 -17.48 5.33 -495.56 -2.64 -20.12 16 5 C 0.06 1.60 5.96 85.56 0.51 2.11 16 6 C 0.49 19.91 7.87 87.66 0.69 20.60 16 7 O -0.59 -30.18 16.20 -3.03 -0.05 -30.23 16 8 N -0.71 -30.36 5.55 -466.78 -2.59 -32.95 16 9 C 0.27 15.01 5.43 85.63 0.46 15.47 16 10 C -0.55 -30.49 9.28 25.60 0.24 -30.26 16 11 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 14 Si 0.99 42.58 29.54 68.60 2.03 44.61 16 15 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 C -0.04 -0.70 2.32 -11.54 -0.03 -0.73 16 19 H 0.07 1.33 7.88 -2.38 -0.02 1.31 16 20 C -0.14 -1.72 8.78 71.98 0.63 -1.09 16 21 C -0.05 -1.10 4.27 -19.86 -0.08 -1.19 16 22 C -0.12 -2.68 8.77 22.27 0.20 -2.49 16 23 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 24 C -0.15 -3.58 10.05 22.27 0.22 -3.35 16 25 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 26 C -0.13 -3.34 9.67 22.27 0.22 -3.12 16 27 H 0.08 0.84 6.83 -2.39 -0.02 0.83 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.80 7.34 -2.39 -0.02 0.78 16 30 H 0.34 9.66 8.18 -89.69 -0.73 8.92 16 31 H 0.08 1.72 7.35 -2.39 -0.02 1.70 16 32 H 0.11 2.61 8.05 -2.39 -0.02 2.59 16 33 H 0.41 14.20 8.32 -92.71 -0.77 13.43 16 34 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 37 H 0.06 0.72 7.63 -2.38 -0.02 0.71 16 38 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.07 0.71 6.66 -2.39 -0.02 0.70 16 40 H 0.13 2.29 7.16 -2.91 -0.02 2.27 16 41 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 44 H 0.12 2.74 7.95 -2.91 -0.02 2.72 16 Total: -1.00 -74.52 362.82 1.20 -73.32 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.51 Total: 31.68 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.68 Total: -9.56 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -4.95 Total: -109.81 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.05 Total: -30.23 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -74.52 1.20 -73.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754179381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.235 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds