Wall clock time and date at job start Tue Mar 31 2020 08:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47530 * 2 1 4 4 C 1.50699 * 109.47272 * 239.99644 * 2 1 3 5 5 N 1.28010 * 120.00092 * 119.99962 * 4 2 1 6 6 N 1.40106 * 119.99886 * 180.02562 * 5 4 2 7 7 C 1.46506 * 119.99525 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46748 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47181 * 180.02562 * 8 7 6 10 10 O 1.42902 * 109.47386 * 180.02562 * 9 8 7 11 11 C 1.35898 * 116.99694 * 180.02562 * 10 9 8 12 12 C 1.38735 * 120.05254 * 179.97438 * 11 10 9 13 13 C 1.38144 * 119.94607 * 179.97438 * 12 11 10 14 14 C 1.38266 * 120.05233 * 0.02562 * 13 12 11 15 15 C 1.38269 * 120.11595 * 359.95530 * 14 13 12 16 16 C 1.38142 * 120.04935 * 0.04230 * 15 14 13 17 17 C 1.53007 * 109.47022 * 120.00330 * 2 1 3 18 18 C 1.50700 * 109.46595 * 294.99618 * 17 2 1 19 19 H 1.08000 * 120.00239 * 0.02562 * 18 17 2 20 20 C 1.37882 * 119.99720 * 179.97438 * 18 17 2 21 21 N 1.31521 * 120.00043 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99838 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46979 * 120.00484 * 22 20 18 25 25 H 1.48497 * 109.47060 * 239.99772 * 22 20 18 26 26 H 1.09004 * 109.47232 * 300.00257 * 1 2 3 27 27 H 1.09004 * 109.47011 * 59.99978 * 1 2 3 28 28 H 1.08996 * 109.47530 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00436 * 300.00866 * 4 2 1 30 30 H 0.96993 * 119.99884 * 0.02562 * 6 5 4 31 31 H 1.08999 * 109.46978 * 60.00244 * 7 6 5 32 32 H 1.08993 * 109.47175 * 300.00161 * 7 6 5 33 33 H 1.08999 * 109.47370 * 60.00254 * 8 7 6 34 34 H 1.09006 * 109.47017 * 300.00096 * 8 7 6 35 35 H 1.08999 * 109.46920 * 59.99785 * 9 8 7 36 36 H 1.08998 * 109.47220 * 300.00155 * 9 8 7 37 37 H 1.08002 * 120.02704 * 359.70561 * 12 11 10 38 38 H 1.08001 * 119.97447 * 179.97438 * 13 12 11 39 39 H 1.08000 * 119.94089 * 179.97438 * 14 13 12 40 40 H 1.07992 * 119.97577 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.02748 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.47020 * 54.99607 * 17 2 1 43 43 H 1.08991 * 109.47260 * 174.99912 * 17 2 1 44 44 H 0.96996 * 119.99916 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7682 -0.0884 -2.0731 6 7 3.2348 -0.7488 -3.2172 7 6 4.0776 -0.0370 -4.1813 8 6 4.4461 -0.9787 -5.3294 9 6 5.3267 -0.2356 -6.3360 10 8 5.6704 -1.1150 -7.4086 11 6 6.4555 -0.6075 -8.3950 12 6 6.8280 -1.4060 -9.4666 13 6 7.6257 -0.8877 -10.4683 14 6 8.0532 0.4256 -10.4032 15 6 7.6830 1.2237 -9.3365 16 6 6.8854 0.7100 -8.3323 17 6 2.0399 -0.7214 1.2493 18 6 1.6413 0.0570 2.4766 19 1 1.0799 0.9742 2.3757 20 6 1.9922 -0.4023 3.7283 21 7 2.6754 -1.5195 3.8512 22 14 1.4987 0.5629 5.2496 23 1 0.7423 1.7745 4.8433 24 1 0.6440 -0.2856 6.1184 25 1 2.7170 0.9665 5.9965 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7713 -1.7445 -1.4014 30 1 2.9999 -1.6772 -3.3710 31 1 4.9861 0.3057 -3.6861 32 1 3.5332 0.8208 -4.5759 33 1 3.5373 -1.3211 -5.8245 34 1 4.9904 -1.8369 -4.9350 35 1 6.2354 0.1064 -5.8406 36 1 4.7829 0.6227 -6.7304 37 1 6.4983 -2.4333 -9.5154 38 1 7.9163 -1.5090 -11.3025 39 1 8.6772 0.8289 -11.1871 40 1 8.0179 2.2492 -9.2882 41 1 6.5968 1.3336 -7.4991 42 1 1.6052 -1.7199 1.2951 43 1 3.1261 -0.7996 1.2056 44 1 2.9226 -1.8424 4.7318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766021482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:53 Heat of formation + Delta-G solvation = 7.635896 kcal Electronic energy + Delta-G solvation = -20872.279143 eV Core-core repulsion = 17597.172961 eV Total energy + Delta-G solvation = -3275.106181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45688 -37.95851 -37.14478 -35.42114 -33.62850 -32.04231 -31.38435 -30.41305 -29.22071 -26.90072 -25.49295 -23.79750 -23.07866 -22.36892 -21.64519 -21.18455 -18.92386 -18.57079 -16.85641 -16.69904 -16.53854 -16.13618 -15.89541 -15.05406 -14.84794 -14.76781 -14.46435 -13.84451 -13.63665 -13.24094 -13.10189 -12.97449 -12.62746 -12.34324 -12.11352 -11.95062 -11.85408 -11.70658 -11.27232 -11.13605 -11.04462 -10.88021 -10.78927 -10.65569 -10.35674 -9.89765 -9.47726 -9.39368 -9.32123 -8.98857 -8.57906 -8.32824 -7.54956 -5.97383 -3.98864 0.95106 1.07088 2.63800 2.90016 3.33418 3.37580 3.41326 3.41471 3.45365 4.40266 4.48742 4.50046 4.51703 4.66573 4.74605 4.75107 4.96333 5.00341 5.12034 5.17873 5.28651 5.38798 5.43053 5.58331 5.61532 5.69653 5.83495 5.91373 5.94797 6.02616 6.13459 6.15084 6.24856 6.39062 6.47804 6.75026 6.98931 7.04518 7.06154 7.14868 7.45281 7.70299 7.82989 8.02314 8.43789 8.92545 9.07443 9.64546 11.14090 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.038350 B = 0.001722 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.937938 B =16254.160502 C =16423.823476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.035 4.035 3 H 0.073 0.927 4 C 0.066 3.934 5 N -0.256 5.256 6 N -0.684 5.684 7 C 0.170 3.830 8 C -0.130 4.130 9 C 0.065 3.935 10 O -0.315 6.315 11 C 0.132 3.868 12 C -0.155 4.155 13 C -0.082 4.082 14 C -0.162 4.162 15 C -0.080 4.080 16 C -0.210 4.210 17 C 0.033 3.967 18 C -0.513 4.513 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.370 0.630 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 1.941 -27.823 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.056 4.056 3 H 0.091 0.909 4 C -0.150 4.150 5 N -0.059 5.059 6 N -0.423 5.423 7 C 0.044 3.956 8 C -0.169 4.169 9 C -0.010 4.010 10 O -0.229 6.229 11 C 0.087 3.913 12 C -0.173 4.173 13 C -0.100 4.100 14 C -0.180 4.180 15 C -0.098 4.098 16 C -0.228 4.228 17 C -0.005 4.005 18 C -0.552 4.552 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.207 0.793 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.240 2.636 -28.012 29.318 hybrid contribution -0.466 -0.647 0.928 1.224 sum 7.774 1.989 -27.084 28.248 Atomic orbital electron populations 1.21660 0.95011 1.01157 1.00683 1.20199 0.95027 0.99575 0.90759 0.90901 1.26111 0.95835 0.97650 0.95401 1.73686 1.10381 1.26328 0.95477 1.47819 1.60146 1.12279 1.22075 1.20581 0.93903 0.93893 0.87196 1.21659 1.00368 0.99757 0.95071 1.22660 0.99128 0.92708 0.86539 1.86046 1.64543 1.40688 1.31584 1.19044 0.91246 0.92213 0.88804 1.20484 1.02498 1.00474 0.93883 1.20985 0.95911 0.95461 0.97624 1.21084 1.02945 0.94556 0.99443 1.20986 0.95915 0.99697 0.93225 1.21332 1.04203 0.95155 1.02150 1.19114 0.96387 0.95506 0.89528 1.21256 1.34759 1.08375 0.90783 0.92266 1.25020 0.95288 0.95090 0.99128 1.69981 1.39019 1.21245 1.23316 0.86549 0.78229 0.80111 0.83188 1.19678 1.21116 1.21137 0.91177 0.94832 0.93378 0.89216 0.79317 0.92660 0.92790 0.90246 0.90141 0.91417 0.91502 0.85207 0.85387 0.85937 0.85742 0.85286 0.96286 0.96479 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.98 37.15 0.33 -1.99 16 2 C -0.03 -0.71 2.75 -91.77 -0.25 -0.96 16 3 H 0.07 1.56 8.11 -51.93 -0.42 1.14 16 4 C 0.07 1.23 9.65 -13.87 -0.13 1.09 16 5 N -0.26 -4.65 11.38 32.67 0.37 -4.28 16 6 N -0.68 -9.99 6.62 -10.61 -0.07 -10.06 16 7 C 0.17 1.92 6.67 -4.04 -0.03 1.90 16 8 C -0.13 -1.16 5.70 -26.73 -0.15 -1.31 16 9 C 0.07 0.54 4.74 37.16 0.18 0.72 16 10 O -0.32 -3.20 10.14 -19.42 -0.20 -3.40 16 11 C 0.13 1.28 6.69 -39.22 -0.26 1.01 16 12 C -0.15 -1.33 9.99 -39.43 -0.39 -1.73 16 13 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 14 C -0.16 -1.12 10.04 -39.56 -0.40 -1.52 16 15 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 16 C -0.21 -1.77 9.04 -39.44 -0.36 -2.12 16 17 C 0.03 0.83 4.43 -27.88 -0.12 0.71 16 18 C -0.51 -14.15 8.41 -34.44 -0.29 -14.44 16 19 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 20 C 0.06 1.58 5.46 -17.81 -0.10 1.48 16 21 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.53 8.00 -52.48 -0.42 1.11 16 30 H 0.37 4.83 8.41 -182.60 -1.54 3.29 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 36 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.91 6.30 -52.48 -0.33 0.58 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -31.62 370.74 -9.81 -41.43 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.44 Total: -0.59 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.77 Total: -19.13 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 1.04 Total: -40.35 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.20 Total: -3.40 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.62 -9.81 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766021482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.066 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds