Wall clock time and date at job start Tue Mar 31 2020 08:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47530 * 2 1 4 4 C 1.50699 * 109.47272 * 239.99644 * 2 1 3 5 5 N 1.28010 * 120.00092 * 119.99962 * 4 2 1 6 6 N 1.40106 * 119.99886 * 180.02562 * 5 4 2 7 7 C 1.46506 * 119.99525 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46748 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47181 * 180.02562 * 8 7 6 10 10 O 1.42902 * 109.47386 * 180.02562 * 9 8 7 11 11 C 1.35898 * 116.99694 * 180.02562 * 10 9 8 12 12 C 1.38735 * 120.05254 * 179.97438 * 11 10 9 13 13 C 1.38144 * 119.94607 * 179.97438 * 12 11 10 14 14 C 1.38266 * 120.05233 * 0.02562 * 13 12 11 15 15 C 1.38269 * 120.11595 * 359.95530 * 14 13 12 16 16 C 1.38142 * 120.04935 * 0.04230 * 15 14 13 17 17 C 1.53007 * 109.47022 * 120.00330 * 2 1 3 18 18 C 1.50700 * 109.46595 * 294.99618 * 17 2 1 19 19 H 1.08000 * 120.00239 * 0.02562 * 18 17 2 20 20 C 1.37882 * 119.99720 * 179.97438 * 18 17 2 21 21 N 1.31521 * 120.00043 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99838 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46979 * 120.00484 * 22 20 18 25 25 H 1.48497 * 109.47060 * 239.99772 * 22 20 18 26 26 H 1.09004 * 109.47232 * 300.00257 * 1 2 3 27 27 H 1.09004 * 109.47011 * 59.99978 * 1 2 3 28 28 H 1.08996 * 109.47530 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00436 * 300.00866 * 4 2 1 30 30 H 0.96993 * 119.99884 * 0.02562 * 6 5 4 31 31 H 1.08999 * 109.46978 * 60.00244 * 7 6 5 32 32 H 1.08993 * 109.47175 * 300.00161 * 7 6 5 33 33 H 1.08999 * 109.47370 * 60.00254 * 8 7 6 34 34 H 1.09006 * 109.47017 * 300.00096 * 8 7 6 35 35 H 1.08999 * 109.46920 * 59.99785 * 9 8 7 36 36 H 1.08998 * 109.47220 * 300.00155 * 9 8 7 37 37 H 1.08002 * 120.02704 * 359.70561 * 12 11 10 38 38 H 1.08001 * 119.97447 * 179.97438 * 13 12 11 39 39 H 1.08000 * 119.94089 * 179.97438 * 14 13 12 40 40 H 1.07992 * 119.97577 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.02748 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.47020 * 54.99607 * 17 2 1 43 43 H 1.08991 * 109.47260 * 174.99912 * 17 2 1 44 44 H 0.96996 * 119.99916 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7682 -0.0884 -2.0731 6 7 3.2348 -0.7488 -3.2172 7 6 4.0776 -0.0370 -4.1813 8 6 4.4461 -0.9787 -5.3294 9 6 5.3267 -0.2356 -6.3360 10 8 5.6704 -1.1150 -7.4086 11 6 6.4555 -0.6075 -8.3950 12 6 6.8280 -1.4060 -9.4666 13 6 7.6257 -0.8877 -10.4683 14 6 8.0532 0.4256 -10.4032 15 6 7.6830 1.2237 -9.3365 16 6 6.8854 0.7100 -8.3323 17 6 2.0399 -0.7214 1.2493 18 6 1.6413 0.0570 2.4766 19 1 1.0799 0.9742 2.3757 20 6 1.9922 -0.4023 3.7283 21 7 2.6754 -1.5195 3.8512 22 14 1.4987 0.5629 5.2496 23 1 0.7423 1.7745 4.8433 24 1 0.6440 -0.2856 6.1184 25 1 2.7170 0.9665 5.9965 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7713 -1.7445 -1.4014 30 1 2.9999 -1.6772 -3.3710 31 1 4.9861 0.3057 -3.6861 32 1 3.5332 0.8208 -4.5759 33 1 3.5373 -1.3211 -5.8245 34 1 4.9904 -1.8369 -4.9350 35 1 6.2354 0.1064 -5.8406 36 1 4.7829 0.6227 -6.7304 37 1 6.4983 -2.4333 -9.5154 38 1 7.9163 -1.5090 -11.3025 39 1 8.6772 0.8289 -11.1871 40 1 8.0179 2.2492 -9.2882 41 1 6.5968 1.3336 -7.4991 42 1 1.6052 -1.7199 1.2951 43 1 3.1261 -0.7996 1.2056 44 1 2.9226 -1.8424 4.7318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766021482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:52 Heat of formation + Delta-G solvation = -9.859932 kcal Electronic energy + Delta-G solvation = -20873.037819 eV Core-core repulsion = 17597.172961 eV Total energy + Delta-G solvation = -3275.864857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07626 -38.74309 -38.36473 -36.79638 -35.06837 -33.81641 -31.99131 -31.24663 -30.15819 -28.79562 -26.52163 -25.45208 -23.81026 -23.13312 -22.84090 -22.23533 -20.46900 -19.23778 -18.59444 -17.73704 -17.39907 -17.13928 -16.69127 -16.50096 -16.09230 -15.70591 -15.32030 -14.79612 -14.76545 -14.47427 -14.36112 -14.19274 -13.93404 -13.52587 -13.18922 -13.10567 -12.81303 -12.72924 -12.59079 -12.45682 -12.40187 -12.22541 -12.16994 -11.71550 -11.70554 -11.61846 -11.18339 -11.13945 -10.77372 -10.50474 -9.95858 -9.18834 -8.81194 -8.13646 -6.22789 0.38722 0.48298 1.43147 1.44291 1.46281 1.58104 1.79211 2.39503 2.47625 2.84343 3.20291 3.78550 3.83260 3.92595 3.94785 4.05360 4.13729 4.25355 4.29982 4.34401 4.41053 4.47896 4.52733 4.58779 4.61689 4.67194 4.74324 4.94051 5.01453 5.08450 5.10631 5.20992 5.30501 5.35753 5.48171 5.49751 5.53944 5.60069 5.60333 5.83021 5.85790 5.91107 6.30250 6.32770 6.43409 6.92938 7.45402 7.60918 8.98417 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.038350 B = 0.001722 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.937938 B =16254.160502 C =16423.823476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.025 4.025 3 H 0.061 0.939 4 C 0.054 3.946 5 N -0.267 5.267 6 N -0.680 5.680 7 C 0.167 3.833 8 C -0.116 4.116 9 C 0.066 3.934 10 O -0.332 6.332 11 C 0.108 3.892 12 C -0.172 4.172 13 C -0.085 4.085 14 C -0.165 4.165 15 C -0.088 4.088 16 C -0.221 4.221 17 C 0.040 3.960 18 C -0.527 4.527 19 H 0.066 0.934 20 C -0.002 4.002 21 N -0.936 5.936 22 Si 0.962 3.038 23 H -0.259 1.259 24 H -0.279 1.279 25 H -0.284 1.284 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.379 0.621 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.001 0.999 43 H -0.018 1.018 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 3.074 -29.204 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.046 4.046 3 H 0.080 0.920 4 C -0.162 4.162 5 N -0.071 5.071 6 N -0.420 5.420 7 C 0.043 3.957 8 C -0.155 4.155 9 C -0.009 4.009 10 O -0.246 6.246 11 C 0.063 3.937 12 C -0.191 4.191 13 C -0.103 4.103 14 C -0.183 4.183 15 C -0.106 4.106 16 C -0.240 4.240 17 C 0.002 3.998 18 C -0.565 4.565 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.183 1.183 24 H -0.205 1.205 25 H -0.210 1.210 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.217 0.783 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.019 0.981 43 H 0.001 0.999 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.133 3.778 -29.416 30.752 hybrid contribution -0.332 -0.996 1.215 1.606 sum 7.801 2.782 -28.201 29.392 Atomic orbital electron populations 1.21575 0.93074 1.01770 1.01342 1.19919 0.96625 0.98289 0.89762 0.92013 1.25763 0.97103 0.98136 0.95217 1.73527 1.09502 1.27690 0.96419 1.47962 1.59846 1.12926 1.21237 1.20739 0.93295 0.94496 0.87164 1.21482 1.00628 0.99038 0.94302 1.22665 0.99402 0.92652 0.86211 1.85995 1.65037 1.41486 1.32116 1.19310 0.92128 0.93076 0.89194 1.20730 1.03201 1.00829 0.94324 1.21316 0.95150 0.96011 0.97782 1.21450 1.02652 0.94446 0.99784 1.21322 0.95479 1.00817 0.92993 1.21535 1.04556 0.94934 1.02937 1.18957 0.94076 0.95044 0.91748 1.21675 1.34414 1.08677 0.91748 0.91535 1.25947 0.95268 0.96080 1.02657 1.70116 1.40370 1.23024 1.24179 0.85432 0.77926 0.78969 0.78923 1.18309 1.20527 1.20964 0.92372 0.92198 0.92808 0.87856 0.78304 0.92974 0.92116 0.89877 0.90457 0.90804 0.90395 0.84945 0.83090 0.83631 0.83757 0.84425 0.98109 0.99941 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 8.98 71.98 0.65 -3.60 16 2 C -0.02 -1.03 2.75 -11.54 -0.03 -1.06 16 3 H 0.06 2.66 8.11 -2.39 -0.02 2.64 16 4 C 0.05 1.98 9.65 88.67 0.86 2.83 16 5 N -0.27 -9.55 11.38 -50.46 -0.57 -10.12 16 6 N -0.68 -19.08 6.62 -187.49 -1.24 -20.32 16 7 C 0.17 3.59 6.67 86.38 0.58 4.17 16 8 C -0.12 -1.93 5.70 30.59 0.17 -1.76 16 9 C 0.07 1.03 4.74 71.98 0.34 1.37 16 10 O -0.33 -6.63 10.14 -92.40 -0.94 -7.57 16 11 C 0.11 2.04 6.69 22.51 0.15 2.19 16 12 C -0.17 -2.88 9.99 22.37 0.22 -2.66 16 13 C -0.08 -1.08 10.04 22.25 0.22 -0.86 16 14 C -0.17 -1.96 10.04 22.28 0.22 -1.74 16 15 C -0.09 -1.16 10.04 22.25 0.22 -0.93 16 16 C -0.22 -3.52 9.04 22.36 0.20 -3.32 16 17 C 0.04 2.09 4.43 29.85 0.13 2.22 16 18 C -0.53 -29.37 8.41 25.60 0.22 -29.16 16 19 H 0.07 3.53 7.06 -2.91 -0.02 3.51 16 20 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 21 N -0.94 -56.97 13.29 21.45 0.28 -56.69 16 22 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H 0.06 2.19 6.95 -2.38 -0.02 2.17 16 27 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.10 3.46 8.00 -2.91 -0.02 3.44 16 30 H 0.38 9.43 8.41 -213.33 -1.79 7.64 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.35 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 36 H 0.08 1.02 7.66 -2.39 -0.02 1.00 16 37 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 40 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 1.80 6.30 -2.91 -0.02 1.78 16 42 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 43 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -68.17 370.74 3.35 -64.82 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -0.83 Total: 15.73 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 4.62 Total: -31.98 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -1.53 Total: -87.13 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.94 Total: -7.57 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.17 3.35 -64.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766021482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.955 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds