Wall clock time and date at job start Tue Mar 31 2020 08:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47058 * 2 1 4 4 C 1.53003 * 109.47625 * 239.99279 * 2 1 3 5 5 N 1.46494 * 109.47300 * 294.30904 * 4 2 1 6 6 C 1.34775 * 120.00130 * 175.24521 * 5 4 2 7 7 O 1.21281 * 119.99793 * 0.26898 * 6 5 4 8 8 C 1.50700 * 120.00005 * 180.27549 * 6 5 4 9 9 C 1.50706 * 109.47145 * 179.97438 * 8 6 5 10 10 C 1.37630 * 120.12810 * 265.00193 * 9 8 6 11 11 C 1.38617 * 120.24486 * 179.97438 * 10 9 8 12 12 C 1.38655 * 120.50454 * 0.02562 * 11 10 9 13 13 C 1.37600 * 120.24726 * 0.03545 * 12 11 10 14 14 C 1.40698 * 120.12140 * 84.72419 * 9 8 6 15 15 C 1.41396 * 120.24925 * 359.97438 * 14 9 8 16 16 H 1.07998 * 119.99985 * 331.30396 * 15 14 9 17 17 C 1.39947 * 120.00271 * 151.29858 * 15 14 9 18 18 N 1.30816 * 120.00037 * 161.87252 * 17 15 14 19 19 Si 1.86800 * 120.00006 * 341.87585 * 17 15 14 20 20 H 1.48502 * 109.46923 * 90.03424 * 19 17 15 21 21 H 1.48493 * 109.47340 * 210.03605 * 19 17 15 22 22 H 1.48497 * 109.47137 * 330.03930 * 19 17 15 23 23 N 1.46901 * 109.47125 * 119.99518 * 2 1 3 24 24 C 1.46897 * 111.00347 * 179.73801 * 23 2 1 25 25 C 1.46901 * 111.00089 * 303.69285 * 23 2 1 26 26 H 1.09004 * 109.46542 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47280 * 300.00205 * 1 2 3 28 28 H 1.08997 * 109.46710 * 60.01091 * 1 2 3 29 29 H 1.08993 * 109.47129 * 174.30624 * 4 2 1 30 30 H 1.09003 * 109.46888 * 54.30832 * 4 2 1 31 31 H 0.97006 * 120.00188 * 355.51635 * 5 4 2 32 32 H 1.09003 * 109.47089 * 299.99716 * 8 6 5 33 33 H 1.09001 * 109.47353 * 59.99737 * 8 6 5 34 34 H 1.07993 * 119.87900 * 359.97438 * 10 9 8 35 35 H 1.08000 * 119.74760 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.87687 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.12908 * 179.97438 * 13 12 11 38 38 H 0.97003 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47368 * 60.63268 * 24 23 2 40 40 H 1.09003 * 109.47223 * 180.63255 * 24 23 2 41 41 H 1.08999 * 109.47007 * 300.63258 * 24 23 2 42 42 H 1.08999 * 109.47312 * 59.99469 * 25 23 2 43 43 H 1.08997 * 109.47750 * 179.97438 * 25 23 2 44 44 H 1.09004 * 109.46958 * 299.99762 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6669 -2.1364 -1.1825 6 6 1.9282 -2.9520 -2.2232 7 8 2.4768 -2.5155 -3.2128 8 6 1.5387 -4.4063 -2.1571 9 6 1.9384 -5.0921 -3.4381 10 6 1.0267 -5.2343 -4.4592 11 6 1.3919 -5.8642 -5.6387 12 6 2.6768 -6.3583 -5.8041 13 6 3.6044 -6.2285 -4.7961 14 6 3.2469 -5.5844 -3.5969 15 6 4.1940 -5.4384 -2.5572 16 1 4.1205 -4.6062 -1.8728 17 6 5.2264 -6.3724 -2.4148 18 7 6.2870 -6.0726 -1.7102 19 14 5.0899 -8.0471 -3.2309 20 1 5.6734 -7.9820 -4.5949 21 1 5.8276 -9.0524 -2.4244 22 1 3.6603 -8.4382 -3.3223 23 7 2.0197 -0.6924 1.1995 24 6 3.4881 -0.7175 1.2304 25 6 1.4779 -0.0791 2.4195 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 3.1253 -0.6339 -1.3015 30 1 1.5960 -0.2699 -2.1363 31 1 1.2282 -2.4856 -0.3909 32 1 2.0462 -4.8806 -1.3170 33 1 0.4601 -4.4878 -2.0230 34 1 0.0230 -4.8536 -4.3411 35 1 0.6701 -5.9710 -6.4350 36 1 2.9504 -6.8477 -6.7272 37 1 4.6046 -6.6144 -4.9268 38 1 7.0029 -6.7198 -1.6118 39 1 3.8687 0.3038 1.2478 40 1 3.8238 -1.2456 2.1229 41 1 3.8615 -1.2292 0.3434 42 1 0.3895 -0.1365 2.4025 43 1 1.8559 -0.6111 3.2924 44 1 1.7859 0.9654 2.4686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777303040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:30 Heat of formation + Delta-G solvation = -15.240890 kcal Electronic energy + Delta-G solvation = -23489.534775 eV Core-core repulsion = 20213.436582 eV Total energy + Delta-G solvation = -3276.098193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.44631 -38.26729 -37.27195 -33.94846 -33.51561 -31.84906 -31.01352 -30.23411 -28.48944 -26.96441 -25.48960 -24.66999 -23.89372 -21.37121 -20.67046 -19.73493 -19.28453 -17.26399 -16.49460 -16.33854 -15.76688 -15.31867 -14.94582 -14.71941 -14.62463 -14.19629 -13.85513 -13.66913 -13.38694 -12.93300 -12.66598 -12.51542 -12.42721 -12.35444 -12.06224 -11.81250 -11.78955 -11.48809 -11.39981 -11.27356 -10.99542 -10.77369 -10.68919 -10.63809 -10.20208 -9.62778 -9.45129 -9.06530 -8.99441 -8.54044 -8.44334 -7.51751 -7.41607 -6.86867 -4.38692 2.66233 2.79964 3.18165 3.26380 3.37874 3.48549 3.66869 3.98381 4.05062 4.60497 4.66490 4.83805 5.04571 5.15370 5.24005 5.45109 5.47547 5.48663 5.59808 5.61178 5.71622 5.77958 5.83422 5.86233 5.98314 6.05685 6.07644 6.18335 6.19309 6.29196 6.40482 6.69250 6.81707 6.83194 6.89671 7.03770 7.05987 7.29563 7.53266 7.76061 7.84269 8.00152 8.18121 8.24341 8.45202 8.78273 8.91137 9.03427 10.15376 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.004674 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.865112 B = 5989.243689 C = 7138.151497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.051 0.949 4 C 0.129 3.871 5 N -0.730 5.730 6 C 0.514 3.486 7 O -0.528 6.528 8 C -0.074 4.074 9 C -0.165 4.165 10 C -0.069 4.069 11 C -0.245 4.245 12 C -0.079 4.079 13 C -0.242 4.242 14 C 0.110 3.890 15 C -0.441 4.441 16 H 0.089 0.911 17 C 0.084 3.916 18 N -0.810 5.810 19 Si 0.914 3.086 20 H -0.270 1.270 21 H -0.294 1.294 22 H -0.247 1.247 23 N -0.540 5.540 24 C 0.020 3.980 25 C 0.022 3.978 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.403 0.597 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.283 0.717 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 8.694 7.744 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.041 4.041 3 H 0.069 0.931 4 C 0.004 3.996 5 N -0.385 5.385 6 C 0.301 3.699 7 O -0.403 6.403 8 C -0.113 4.113 9 C -0.166 4.166 10 C -0.087 4.087 11 C -0.264 4.264 12 C -0.098 4.098 13 C -0.261 4.261 14 C 0.107 3.893 15 C -0.469 4.469 16 H 0.107 0.893 17 C -0.134 4.134 18 N -0.434 5.434 19 Si 0.742 3.258 20 H -0.197 1.197 21 H -0.222 1.222 22 H -0.170 1.170 23 N -0.265 5.265 24 C -0.128 4.128 25 C -0.126 4.126 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.238 0.762 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.593 8.516 7.149 14.052 hybrid contribution 0.373 0.099 0.120 0.404 sum -8.221 8.615 7.269 13.951 Atomic orbital electron populations 1.21905 0.93844 1.02984 1.01733 1.21960 0.96169 0.95725 0.90259 0.93086 1.21235 0.99895 0.82529 0.95965 1.45920 1.63859 1.08780 1.19938 1.21065 0.78047 0.88571 0.82181 1.90678 1.40764 1.76841 1.31997 1.20277 1.00613 0.90836 0.99611 1.19080 0.94093 1.08496 0.94965 1.20420 0.97189 0.97692 0.93438 1.20314 0.96695 1.10826 0.98553 1.20579 0.93823 0.98316 0.97050 1.21087 0.98846 1.10750 0.95425 1.17484 0.90951 0.89034 0.91834 1.19427 1.05819 1.09667 1.12018 0.89270 1.26165 0.92990 1.01031 0.93235 1.69705 1.04902 1.35998 1.32826 0.86344 0.80660 0.80507 0.78329 1.19659 1.22225 1.17025 1.61960 1.09042 1.53667 1.01807 1.22469 0.86660 0.99885 1.03804 1.22443 1.00891 0.96824 0.92485 0.91405 0.92439 0.91950 0.92057 0.91414 0.76204 0.88287 0.90525 0.89166 0.89119 0.89123 0.88099 0.90641 0.95835 0.91216 0.90267 0.91012 0.91378 0.95917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.72 37.16 0.32 -0.99 16 2 C 0.07 0.71 2.34 -67.71 -0.16 0.55 16 3 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 1.78 4.73 -4.04 -0.02 1.76 16 5 N -0.73 -11.23 5.09 -60.30 -0.31 -11.54 16 6 C 0.51 10.31 7.43 -10.99 -0.08 10.23 16 7 O -0.53 -13.04 16.03 5.56 0.09 -12.95 16 8 C -0.07 -1.45 5.19 -29.03 -0.15 -1.60 16 9 C -0.16 -3.90 4.43 -103.91 -0.46 -4.36 16 10 C -0.07 -1.53 9.66 -39.66 -0.38 -1.92 16 11 C -0.24 -5.43 10.05 -39.29 -0.39 -5.82 16 12 C -0.08 -1.85 10.02 -39.66 -0.40 -2.24 16 13 C -0.24 -6.21 7.29 -38.87 -0.28 -6.49 16 14 C 0.11 2.89 5.14 -106.82 -0.55 2.34 16 15 C -0.44 -12.10 8.60 -37.74 -0.32 -12.42 16 16 H 0.09 2.57 6.93 -52.49 -0.36 2.21 16 17 C 0.08 2.25 5.41 -17.34 -0.09 2.15 16 18 N -0.81 -21.91 13.93 55.55 0.77 -21.14 16 19 Si 0.91 21.38 24.54 -169.99 -4.17 17.21 16 20 H -0.27 -6.23 6.42 56.52 0.36 -5.87 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.25 -5.87 7.04 56.52 0.40 -5.47 16 23 N -0.54 -5.79 4.23 -243.17 -1.03 -6.82 16 24 C 0.02 0.23 9.22 60.06 0.55 0.78 16 25 C 0.02 0.18 9.11 60.07 0.55 0.73 16 26 H 0.07 0.64 7.33 -51.93 -0.38 0.26 16 27 H 0.06 0.44 6.35 -51.93 -0.33 0.11 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.95 6.70 -51.93 -0.35 0.60 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.40 5.40 7.42 -40.82 -0.30 5.09 16 32 H 0.10 1.96 7.13 -51.93 -0.37 1.59 16 33 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.10 2.58 4.38 -52.49 -0.23 2.35 16 38 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 39 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 41 H 0.08 1.10 6.39 -51.93 -0.33 0.76 16 42 H 0.07 0.54 6.24 -51.93 -0.32 0.22 16 43 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 44 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -31.22 348.08 -8.07 -39.29 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.80 Total: 7.99 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -1.87 Total: -17.30 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.56 Total: -39.49 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.17 Total: 17.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.22 -8.07 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777303040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.054 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds