Wall clock time and date at job start Tue Mar 31 2020 08:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47058 * 2 1 4 4 C 1.53003 * 109.47625 * 239.99279 * 2 1 3 5 5 N 1.46494 * 109.47300 * 294.30904 * 4 2 1 6 6 C 1.34775 * 120.00130 * 175.24521 * 5 4 2 7 7 O 1.21281 * 119.99793 * 0.26898 * 6 5 4 8 8 C 1.50700 * 120.00005 * 180.27549 * 6 5 4 9 9 C 1.50706 * 109.47145 * 179.97438 * 8 6 5 10 10 C 1.37630 * 120.12810 * 265.00193 * 9 8 6 11 11 C 1.38617 * 120.24486 * 179.97438 * 10 9 8 12 12 C 1.38655 * 120.50454 * 0.02562 * 11 10 9 13 13 C 1.37600 * 120.24726 * 0.03545 * 12 11 10 14 14 C 1.40698 * 120.12140 * 84.72419 * 9 8 6 15 15 C 1.41396 * 120.24925 * 359.97438 * 14 9 8 16 16 H 1.07998 * 119.99985 * 331.30396 * 15 14 9 17 17 C 1.39947 * 120.00271 * 151.29858 * 15 14 9 18 18 N 1.30816 * 120.00037 * 161.87252 * 17 15 14 19 19 Si 1.86800 * 120.00006 * 341.87585 * 17 15 14 20 20 H 1.48502 * 109.46923 * 90.03424 * 19 17 15 21 21 H 1.48493 * 109.47340 * 210.03605 * 19 17 15 22 22 H 1.48497 * 109.47137 * 330.03930 * 19 17 15 23 23 N 1.46901 * 109.47125 * 119.99518 * 2 1 3 24 24 C 1.46897 * 111.00347 * 179.73801 * 23 2 1 25 25 C 1.46901 * 111.00089 * 303.69285 * 23 2 1 26 26 H 1.09004 * 109.46542 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47280 * 300.00205 * 1 2 3 28 28 H 1.08997 * 109.46710 * 60.01091 * 1 2 3 29 29 H 1.08993 * 109.47129 * 174.30624 * 4 2 1 30 30 H 1.09003 * 109.46888 * 54.30832 * 4 2 1 31 31 H 0.97006 * 120.00188 * 355.51635 * 5 4 2 32 32 H 1.09003 * 109.47089 * 299.99716 * 8 6 5 33 33 H 1.09001 * 109.47353 * 59.99737 * 8 6 5 34 34 H 1.07993 * 119.87900 * 359.97438 * 10 9 8 35 35 H 1.08000 * 119.74760 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.87687 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.12908 * 179.97438 * 13 12 11 38 38 H 0.97003 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47368 * 60.63268 * 24 23 2 40 40 H 1.09003 * 109.47223 * 180.63255 * 24 23 2 41 41 H 1.08999 * 109.47007 * 300.63258 * 24 23 2 42 42 H 1.08999 * 109.47312 * 59.99469 * 25 23 2 43 43 H 1.08997 * 109.47750 * 179.97438 * 25 23 2 44 44 H 1.09004 * 109.46958 * 299.99762 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6669 -2.1364 -1.1825 6 6 1.9282 -2.9520 -2.2232 7 8 2.4768 -2.5155 -3.2128 8 6 1.5387 -4.4063 -2.1571 9 6 1.9384 -5.0921 -3.4381 10 6 1.0267 -5.2343 -4.4592 11 6 1.3919 -5.8642 -5.6387 12 6 2.6768 -6.3583 -5.8041 13 6 3.6044 -6.2285 -4.7961 14 6 3.2469 -5.5844 -3.5969 15 6 4.1940 -5.4384 -2.5572 16 1 4.1205 -4.6062 -1.8728 17 6 5.2264 -6.3724 -2.4148 18 7 6.2870 -6.0726 -1.7102 19 14 5.0899 -8.0471 -3.2309 20 1 5.6734 -7.9820 -4.5949 21 1 5.8276 -9.0524 -2.4244 22 1 3.6603 -8.4382 -3.3223 23 7 2.0197 -0.6924 1.1995 24 6 3.4881 -0.7175 1.2304 25 6 1.4779 -0.0791 2.4195 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 3.1253 -0.6339 -1.3015 30 1 1.5960 -0.2699 -2.1363 31 1 1.2282 -2.4856 -0.3909 32 1 2.0462 -4.8806 -1.3170 33 1 0.4601 -4.4878 -2.0230 34 1 0.0230 -4.8536 -4.3411 35 1 0.6701 -5.9710 -6.4350 36 1 2.9504 -6.8477 -6.7272 37 1 4.6046 -6.6144 -4.9268 38 1 7.0029 -6.7198 -1.6118 39 1 3.8687 0.3038 1.2478 40 1 3.8238 -1.2456 2.1229 41 1 3.8615 -1.2292 0.3434 42 1 0.3895 -0.1365 2.4025 43 1 1.8559 -0.6111 3.2924 44 1 1.7859 0.9654 2.4686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777303040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:29 Heat of formation + Delta-G solvation = -36.559376 kcal Electronic energy + Delta-G solvation = -23490.459214 eV Core-core repulsion = 20213.436582 eV Total energy + Delta-G solvation = -3277.022632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90514 -39.62829 -38.80208 -35.47256 -35.26176 -33.53200 -32.18323 -32.01775 -29.55962 -28.39941 -26.87549 -26.18568 -24.85084 -23.21841 -22.23866 -20.95484 -20.77543 -19.22211 -17.96682 -17.61362 -17.28964 -16.65442 -16.45995 -15.99359 -15.79051 -15.62631 -15.44846 -15.29542 -14.54261 -14.50122 -14.40543 -13.82905 -13.68068 -13.65047 -13.24112 -13.18595 -13.09467 -12.66931 -12.65541 -12.62224 -12.47612 -12.30918 -12.20526 -11.98998 -11.70076 -11.51731 -11.33328 -10.89506 -10.74045 -9.90290 -9.39182 -9.34193 -9.25608 -8.85187 -6.41799 0.82993 0.92432 1.28028 1.41316 1.50330 1.89535 2.14864 2.43426 2.67940 2.98139 3.59494 3.73313 3.95361 4.14038 4.24089 4.32137 4.32544 4.42469 4.44609 4.49832 4.60952 4.65303 4.68153 4.74105 4.77139 4.79539 4.90424 4.91665 4.96782 5.02020 5.06687 5.11544 5.19172 5.35516 5.40264 5.61773 5.71254 5.89786 5.98669 6.03209 6.08652 6.10550 6.32223 6.48828 6.77357 6.84945 6.94094 7.52096 8.22772 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.004674 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.865112 B = 5989.243689 C = 7138.151497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.062 0.938 4 C 0.127 3.873 5 N -0.708 5.708 6 C 0.513 3.487 7 O -0.583 6.583 8 C -0.073 4.073 9 C -0.172 4.172 10 C -0.078 4.078 11 C -0.232 4.232 12 C -0.091 4.091 13 C -0.266 4.266 14 C 0.084 3.916 15 C -0.467 4.467 16 H 0.056 0.944 17 C 0.047 3.953 18 N -0.851 5.851 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.253 1.253 23 N -0.551 5.551 24 C 0.024 3.976 25 C 0.023 3.977 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.415 0.585 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.291 0.709 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 8.719 7.615 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 H 0.080 0.920 4 C 0.003 3.997 5 N -0.362 5.362 6 C 0.301 3.699 7 O -0.462 6.462 8 C -0.112 4.112 9 C -0.174 4.174 10 C -0.096 4.096 11 C -0.251 4.251 12 C -0.109 4.109 13 C -0.285 4.285 14 C 0.081 3.919 15 C -0.497 4.497 16 H 0.074 0.926 17 C -0.167 4.167 18 N -0.478 5.478 19 Si 0.792 3.208 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.177 1.177 23 N -0.276 5.276 24 C -0.124 4.124 25 C -0.125 4.125 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.252 0.748 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -11.513 8.552 7.073 15.991 hybrid contribution 1.109 0.200 0.101 1.132 sum -10.403 8.753 7.174 15.372 Atomic orbital electron populations 1.21886 0.92007 1.03093 1.03005 1.21894 0.97419 0.95440 0.88482 0.91990 1.21331 0.98658 0.81703 0.98048 1.45717 1.62250 1.09193 1.19004 1.21118 0.77413 0.89041 0.82290 1.90650 1.43467 1.77788 1.34313 1.20315 1.03066 0.90173 0.97696 1.19558 0.93470 1.07434 0.96895 1.20891 0.98600 0.97179 0.92944 1.20863 0.96786 1.08199 0.99244 1.20965 0.93988 0.98412 0.97527 1.21238 0.99363 1.11746 0.96160 1.17735 0.92047 0.90235 0.91867 1.19336 1.07745 1.09766 1.12836 0.92566 1.26794 0.92523 1.03597 0.93743 1.69738 1.05807 1.37346 1.34903 0.85515 0.80202 0.77244 0.77806 1.19312 1.20507 1.17690 1.61951 1.08335 1.54488 1.02852 1.22359 0.87604 1.00095 1.02381 1.22499 1.01628 0.97105 0.91254 0.91833 0.90434 0.91466 0.94419 0.91683 0.74761 0.89048 0.86267 0.85544 0.85414 0.86159 0.88908 0.89882 0.94860 0.90764 0.93518 0.89575 0.90999 0.95145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.72 71.98 0.63 -1.54 16 2 C 0.08 1.50 2.34 44.92 0.11 1.60 16 3 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.13 3.56 4.73 86.38 0.41 3.97 16 5 N -0.71 -21.78 5.09 -463.08 -2.36 -24.14 16 6 C 0.51 20.85 7.43 87.66 0.65 21.50 16 7 O -0.58 -29.68 16.03 -3.03 -0.05 -29.73 16 8 C -0.07 -2.84 5.19 29.10 0.15 -2.69 16 9 C -0.17 -8.03 4.43 -19.41 -0.09 -8.12 16 10 C -0.08 -3.24 9.66 22.22 0.21 -3.03 16 11 C -0.23 -9.46 10.05 22.46 0.23 -9.23 16 12 C -0.09 -4.02 10.02 22.22 0.22 -3.80 16 13 C -0.27 -13.61 7.29 22.73 0.17 -13.45 16 14 C 0.08 4.48 5.14 -21.29 -0.11 4.37 16 15 C -0.47 -26.93 8.60 23.46 0.20 -26.72 16 16 H 0.06 3.49 6.93 -2.91 -0.02 3.47 16 17 C 0.05 2.63 5.41 85.26 0.46 3.09 16 18 N -0.85 -48.18 13.93 21.83 0.30 -47.87 16 19 Si 0.97 44.90 24.54 68.60 1.68 46.59 16 20 H -0.27 -12.09 6.42 99.48 0.64 -11.45 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.25 -11.84 7.04 99.48 0.70 -11.14 16 23 N -0.55 -11.14 4.23 -923.27 -3.91 -15.05 16 24 C 0.02 0.55 9.22 127.69 1.18 1.73 16 25 C 0.02 0.33 9.11 127.69 1.16 1.49 16 26 H 0.06 1.03 7.33 -2.39 -0.02 1.01 16 27 H 0.08 0.90 6.35 -2.39 -0.02 0.88 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 1.24 6.70 -2.39 -0.02 1.23 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.41 10.75 7.42 -92.70 -0.69 10.06 16 32 H 0.09 3.70 7.13 -2.39 -0.02 3.69 16 33 H 0.12 3.52 8.05 -2.39 -0.02 3.50 16 34 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.09 4.80 4.38 -2.91 -0.01 4.78 16 38 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 39 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 41 H 0.05 1.38 6.39 -2.39 -0.02 1.36 16 42 H 0.09 1.02 6.24 -2.39 -0.01 1.00 16 43 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 44 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -70.72 348.08 1.49 -69.23 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.23 Total: 31.77 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 5.58 Total: -30.81 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -5.96 Total: -87.06 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.68 Total: 46.59 kcal Total: -70.72 1.49 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777303040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.671 kcal (2) G-P(sol) polarization free energy of solvation -70.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds