Wall clock time and date at job start Tue Mar 31 2020 07:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46809 * 2 1 4 4 N 1.46902 * 109.47191 * 119.99339 * 2 1 3 5 5 C 1.46895 * 111.00050 * 273.96627 * 4 2 1 6 6 C 1.53040 * 109.45021 * 154.68406 * 5 4 2 7 7 C 1.53187 * 109.31317 * 181.37408 * 6 5 4 8 8 N 1.46922 * 108.77992 * 305.36416 * 7 6 5 9 9 C 1.36935 * 120.63074 * 233.59054 * 8 7 6 10 10 H 1.08003 * 119.99830 * 151.81420 * 9 8 7 11 11 C 1.38805 * 120.00153 * 331.81442 * 9 8 7 12 12 N 1.31625 * 120.00100 * 334.93927 * 11 9 8 13 13 Si 1.86804 * 120.00480 * 154.93552 * 11 9 8 14 14 H 1.48501 * 109.46796 * 84.99236 * 13 11 9 15 15 H 1.48491 * 109.47444 * 204.99439 * 13 11 9 16 16 H 1.48505 * 109.46741 * 324.99747 * 13 11 9 17 17 C 1.46925 * 118.73788 * 53.60333 * 8 7 6 18 18 C 1.53046 * 109.45643 * 274.73866 * 5 4 2 19 19 C 1.50701 * 109.47263 * 239.99814 * 2 1 3 20 20 C 1.38160 * 120.02472 * 264.99930 * 19 2 1 21 21 C 1.38245 * 120.05323 * 179.97438 * 20 19 2 22 22 C 1.38292 * 120.11136 * 0.02562 * 21 20 19 23 23 C 1.38118 * 120.05443 * 0.02562 * 22 21 20 24 24 C 1.38717 * 120.02631 * 84.72313 * 19 2 1 25 25 O 1.35896 * 120.05453 * 359.97438 * 24 19 2 26 26 H 1.09004 * 109.46914 * 184.88628 * 1 2 3 27 27 H 1.08996 * 109.47482 * 304.89279 * 1 2 3 28 28 H 1.09006 * 109.47327 * 64.89236 * 1 2 3 29 29 H 1.00905 * 110.99208 * 37.91662 * 4 2 1 30 30 H 1.09000 * 109.46519 * 34.71427 * 5 4 2 31 31 H 1.09002 * 109.49124 * 301.32642 * 6 5 4 32 32 H 1.08997 * 109.49999 * 61.41970 * 6 5 4 33 33 H 1.09002 * 109.58725 * 185.57353 * 7 6 5 34 34 H 1.09001 * 109.58784 * 65.15134 * 7 6 5 35 35 H 0.96996 * 120.00247 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.58744 * 186.61011 * 17 8 7 37 37 H 1.09000 * 109.70314 * 66.25739 * 17 8 7 38 38 H 1.08999 * 109.50086 * 298.58596 * 18 5 4 39 39 H 1.09000 * 109.49432 * 58.68158 * 18 5 4 40 40 H 1.07994 * 119.97489 * 359.97436 * 20 19 2 41 41 H 1.08003 * 119.94553 * 180.02562 * 21 20 19 42 42 H 1.08002 * 119.97017 * 180.02562 * 22 21 20 43 43 H 1.08002 * 120.02322 * 179.97438 * 23 22 21 44 44 H 0.96702 * 113.99613 * 90.00761 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.1057 0.2286 2.3407 6 6 1.9917 -0.5640 3.6449 7 6 2.0473 0.4029 4.8318 8 7 3.2671 1.2147 4.7238 9 6 4.1510 1.2880 5.7672 10 1 5.1981 1.4710 5.5759 11 6 3.7012 1.1271 7.0704 12 7 2.4479 1.3934 7.3717 13 14 4.8746 0.5325 8.3969 14 1 5.6242 1.6893 8.9492 15 1 4.1026 -0.1216 9.4837 16 1 5.8297 -0.4426 7.8119 17 6 3.5204 1.9465 3.4753 18 6 3.4483 0.9623 2.3035 19 6 2.0324 -0.7104 -1.2304 20 6 2.3611 -2.0510 -1.1689 21 6 2.8215 -2.7034 -2.2974 22 6 2.9547 -2.0164 -3.4902 23 6 2.6284 -0.6759 -3.5566 24 6 2.1596 -0.0204 -2.4271 25 8 1.8311 1.2966 -2.4915 26 1 -0.3633 -1.0240 0.0875 27 1 -0.3634 0.5878 0.8429 28 1 -0.3634 0.4361 -0.9306 29 1 1.4395 -1.4880 1.4199 30 1 1.2939 0.9538 2.2842 31 1 1.0454 -1.1048 3.6602 32 1 2.8173 -1.2723 3.7136 33 1 2.0661 -0.1628 5.7634 34 1 1.1728 1.0534 4.8145 35 1 2.1337 1.2814 8.2825 36 1 4.5113 2.3993 3.5117 37 1 2.7679 2.7243 3.3460 38 1 4.2603 0.2397 2.3848 39 1 3.5389 1.5078 1.3642 40 1 2.2584 -2.5896 -0.2385 41 1 3.0776 -3.7514 -2.2475 42 1 3.3142 -2.5284 -4.3705 43 1 2.7330 -0.1398 -4.4882 44 1 2.5652 1.8951 -2.2968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783508195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:26 Heat of formation + Delta-G solvation = -0.123693 kcal Electronic energy + Delta-G solvation = -23445.531313 eV Core-core repulsion = 20170.088651 eV Total energy + Delta-G solvation = -3275.442662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.51 seconds Orbital eigenvalues (eV) -40.13320 -38.15305 -36.71504 -35.77963 -32.98650 -31.16445 -30.19276 -29.85117 -29.17921 -27.96444 -24.68465 -23.75370 -22.59672 -22.21875 -21.40236 -20.27677 -19.13133 -18.40230 -16.83349 -16.22039 -16.01294 -15.47580 -14.96236 -14.76644 -14.23746 -14.09694 -13.87435 -13.58550 -13.48994 -13.32374 -12.95759 -12.50808 -12.33536 -12.28926 -12.04272 -11.88088 -11.75202 -11.34795 -11.18493 -11.02647 -10.74373 -10.66730 -10.42691 -10.35470 -10.20019 -9.92576 -9.60336 -9.43908 -8.88852 -8.64480 -8.41797 -8.17773 -6.68046 -5.80512 -3.16805 1.16886 1.28908 3.38814 3.46401 3.50341 3.55825 4.15474 4.24809 4.52634 4.73344 4.87580 4.94551 5.13837 5.25774 5.30205 5.33405 5.44370 5.48710 5.53850 5.62212 5.71282 5.77617 5.82619 5.94862 5.95999 6.12385 6.16173 6.26611 6.34331 6.38616 6.42152 6.52026 6.59791 6.64901 6.65453 6.75468 6.83942 7.05211 7.30412 7.35480 7.54475 7.55880 7.61195 7.83971 8.44877 9.20824 9.86547 10.44740 11.28263 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.003342 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.992052 B = 8376.084653 C = 8519.003968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 H 0.087 0.913 4 N -0.682 5.682 5 C 0.098 3.902 6 C -0.140 4.140 7 C 0.176 3.824 8 N -0.590 5.590 9 C -0.257 4.257 10 H 0.064 0.936 11 C 0.006 3.994 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.279 1.279 17 C 0.145 3.855 18 C -0.115 4.115 19 C -0.087 4.087 20 C -0.081 4.081 21 C -0.132 4.132 22 C -0.114 4.114 23 C -0.149 4.149 24 C 0.102 3.898 25 O -0.498 6.498 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.336 0.664 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.017 0.983 35 H 0.253 0.747 36 H 0.054 0.946 37 H 0.014 0.986 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -5.554 -19.868 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 H 0.105 0.895 4 N -0.313 5.313 5 C -0.011 4.011 6 C -0.180 4.180 7 C 0.050 3.950 8 N -0.312 5.312 9 C -0.387 4.387 10 H 0.082 0.918 11 C -0.193 4.193 12 N -0.538 5.538 13 Si 0.723 3.277 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.205 1.205 17 C 0.018 3.982 18 C -0.155 4.155 19 C -0.088 4.088 20 C -0.099 4.099 21 C -0.150 4.150 22 C -0.132 4.132 23 C -0.168 4.168 24 C 0.058 3.942 25 O -0.308 6.308 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.085 -5.689 -19.992 20.890 hybrid contribution 0.033 0.017 1.003 1.004 sum -2.052 -5.671 -18.989 19.923 Atomic orbital electron populations 1.22421 0.96163 1.01947 1.02583 1.20262 0.92616 0.97419 0.88003 0.89522 1.60736 1.56015 1.10426 1.04082 1.21459 0.97283 0.93370 0.89002 1.22374 1.00125 0.99478 0.95997 1.20635 0.88195 0.91222 0.94991 1.44038 1.23917 1.51565 1.11715 1.19097 0.89103 1.45662 0.84829 0.91788 1.24963 0.96195 1.01070 0.97087 1.70142 1.15917 1.49015 1.18729 0.86462 0.80621 0.79082 0.81562 1.21315 1.21581 1.20499 1.20919 0.98551 0.92280 0.86461 1.22006 0.96787 0.98828 0.97909 1.20231 0.99851 0.94893 0.93819 1.20938 0.97029 0.93566 0.98377 1.21194 1.00735 1.00082 0.93000 1.20975 1.00234 0.93962 0.98029 1.21330 1.01323 0.95678 0.98427 1.18304 0.99111 0.84509 0.92314 1.84816 1.39596 1.13715 1.92674 0.92635 0.92175 0.91787 0.84518 0.94435 0.93608 0.91740 0.90413 0.96477 0.93687 0.92758 0.96843 0.91775 0.93776 0.85100 0.86046 0.86074 0.85825 0.75601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.15 37.16 0.34 -1.70 16 2 C 0.13 1.60 2.32 -68.86 -0.16 1.44 16 3 H 0.09 1.16 6.69 -51.93 -0.35 0.81 16 4 N -0.68 -9.38 5.04 -100.91 -0.51 -9.89 16 5 C 0.10 1.62 2.27 -67.67 -0.15 1.46 16 6 C -0.14 -2.60 5.36 -26.61 -0.14 -2.75 16 7 C 0.18 4.15 5.37 -3.72 -0.02 4.13 16 8 N -0.59 -14.83 2.98 -172.33 -0.51 -15.34 16 9 C -0.26 -7.13 9.51 -15.06 -0.14 -7.28 16 10 H 0.06 1.75 7.95 -52.48 -0.42 1.33 16 11 C 0.01 0.17 4.68 -17.43 -0.08 0.09 16 12 N -0.89 -26.11 11.76 55.49 0.65 -25.46 16 13 Si 0.89 21.66 29.62 -169.99 -5.04 16.63 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.14 3.07 6.52 -3.71 -0.02 3.05 16 18 C -0.12 -2.05 5.57 -26.61 -0.15 -2.20 16 19 C -0.09 -1.05 5.07 -104.47 -0.53 -1.58 16 20 C -0.08 -0.93 9.32 -39.61 -0.37 -1.29 16 21 C -0.13 -1.33 10.04 -39.56 -0.40 -1.72 16 22 C -0.11 -1.09 10.04 -39.61 -0.40 -1.48 16 23 C -0.15 -1.53 9.99 -39.44 -0.39 -1.92 16 24 C 0.10 1.18 6.68 -39.21 -0.26 0.92 16 25 O -0.50 -5.26 12.65 -19.41 -0.25 -5.51 16 26 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 27 H 0.06 0.74 7.57 -51.93 -0.39 0.34 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.34 4.30 7.47 -39.29 -0.29 4.01 16 30 H 0.04 0.65 7.23 -51.93 -0.38 0.27 16 31 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 2.04 6.34 -51.93 -0.33 1.71 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.04 0.70 7.45 -51.93 -0.39 0.31 16 40 H 0.13 1.45 6.92 -52.49 -0.36 1.08 16 41 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.39 2.62 9.06 45.56 0.41 3.03 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -30.63 349.20 -9.53 -40.16 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.26 Total: 4.99 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.88 Total: -10.84 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.37 Total: -50.69 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.25 Total: -5.51 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.04 Total: 16.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.63 -9.53 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783508195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.040 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.51 seconds