Wall clock time and date at job start Tue Mar 31 2020 07:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46809 * 2 1 4 4 N 1.46902 * 109.47191 * 119.99339 * 2 1 3 5 5 C 1.46895 * 111.00050 * 273.96627 * 4 2 1 6 6 C 1.53040 * 109.45021 * 154.68406 * 5 4 2 7 7 C 1.53187 * 109.31317 * 181.37408 * 6 5 4 8 8 N 1.46922 * 108.77992 * 305.36416 * 7 6 5 9 9 C 1.36935 * 120.63074 * 233.59054 * 8 7 6 10 10 H 1.08003 * 119.99830 * 151.81420 * 9 8 7 11 11 C 1.38805 * 120.00153 * 331.81442 * 9 8 7 12 12 N 1.31625 * 120.00100 * 334.93927 * 11 9 8 13 13 Si 1.86804 * 120.00480 * 154.93552 * 11 9 8 14 14 H 1.48501 * 109.46796 * 84.99236 * 13 11 9 15 15 H 1.48491 * 109.47444 * 204.99439 * 13 11 9 16 16 H 1.48505 * 109.46741 * 324.99747 * 13 11 9 17 17 C 1.46925 * 118.73788 * 53.60333 * 8 7 6 18 18 C 1.53046 * 109.45643 * 274.73866 * 5 4 2 19 19 C 1.50701 * 109.47263 * 239.99814 * 2 1 3 20 20 C 1.38160 * 120.02472 * 264.99930 * 19 2 1 21 21 C 1.38245 * 120.05323 * 179.97438 * 20 19 2 22 22 C 1.38292 * 120.11136 * 0.02562 * 21 20 19 23 23 C 1.38118 * 120.05443 * 0.02562 * 22 21 20 24 24 C 1.38717 * 120.02631 * 84.72313 * 19 2 1 25 25 O 1.35896 * 120.05453 * 359.97438 * 24 19 2 26 26 H 1.09004 * 109.46914 * 184.88628 * 1 2 3 27 27 H 1.08996 * 109.47482 * 304.89279 * 1 2 3 28 28 H 1.09006 * 109.47327 * 64.89236 * 1 2 3 29 29 H 1.00905 * 110.99208 * 37.91662 * 4 2 1 30 30 H 1.09000 * 109.46519 * 34.71427 * 5 4 2 31 31 H 1.09002 * 109.49124 * 301.32642 * 6 5 4 32 32 H 1.08997 * 109.49999 * 61.41970 * 6 5 4 33 33 H 1.09002 * 109.58725 * 185.57353 * 7 6 5 34 34 H 1.09001 * 109.58784 * 65.15134 * 7 6 5 35 35 H 0.96996 * 120.00247 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.58744 * 186.61011 * 17 8 7 37 37 H 1.09000 * 109.70314 * 66.25739 * 17 8 7 38 38 H 1.08999 * 109.50086 * 298.58596 * 18 5 4 39 39 H 1.09000 * 109.49432 * 58.68158 * 18 5 4 40 40 H 1.07994 * 119.97489 * 359.97436 * 20 19 2 41 41 H 1.08003 * 119.94553 * 180.02562 * 21 20 19 42 42 H 1.08002 * 119.97017 * 180.02562 * 22 21 20 43 43 H 1.08002 * 120.02322 * 179.97438 * 23 22 21 44 44 H 0.96702 * 113.99613 * 90.00761 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.1057 0.2286 2.3407 6 6 1.9917 -0.5640 3.6449 7 6 2.0473 0.4029 4.8318 8 7 3.2671 1.2147 4.7238 9 6 4.1510 1.2880 5.7672 10 1 5.1981 1.4710 5.5759 11 6 3.7012 1.1271 7.0704 12 7 2.4479 1.3934 7.3717 13 14 4.8746 0.5325 8.3969 14 1 5.6242 1.6893 8.9492 15 1 4.1026 -0.1216 9.4837 16 1 5.8297 -0.4426 7.8119 17 6 3.5204 1.9465 3.4753 18 6 3.4483 0.9623 2.3035 19 6 2.0324 -0.7104 -1.2304 20 6 2.3611 -2.0510 -1.1689 21 6 2.8215 -2.7034 -2.2974 22 6 2.9547 -2.0164 -3.4902 23 6 2.6284 -0.6759 -3.5566 24 6 2.1596 -0.0204 -2.4271 25 8 1.8311 1.2966 -2.4915 26 1 -0.3633 -1.0240 0.0875 27 1 -0.3634 0.5878 0.8429 28 1 -0.3634 0.4361 -0.9306 29 1 1.4395 -1.4880 1.4199 30 1 1.2939 0.9538 2.2842 31 1 1.0454 -1.1048 3.6602 32 1 2.8173 -1.2723 3.7136 33 1 2.0661 -0.1628 5.7634 34 1 1.1728 1.0534 4.8145 35 1 2.1337 1.2814 8.2825 36 1 4.5113 2.3993 3.5117 37 1 2.7679 2.7243 3.3460 38 1 4.2603 0.2397 2.3848 39 1 3.5389 1.5078 1.3642 40 1 2.2584 -2.5896 -0.2385 41 1 3.0776 -3.7514 -2.2475 42 1 3.3142 -2.5284 -4.3705 43 1 2.7330 -0.1398 -4.4882 44 1 2.5652 1.8951 -2.2968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783508195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:16 Heat of formation + Delta-G solvation = -19.659174 kcal Electronic energy + Delta-G solvation = -23446.378435 eV Core-core repulsion = 20170.088651 eV Total energy + Delta-G solvation = -3276.289784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 14.30 seconds Orbital eigenvalues (eV) -40.98160 -39.58183 -37.56306 -37.10677 -34.64878 -32.76963 -31.57223 -30.97965 -30.31915 -29.20250 -26.50082 -24.79764 -23.79091 -23.59257 -22.82949 -21.27839 -20.73764 -19.24993 -18.69076 -17.16356 -17.03673 -16.71692 -16.34719 -16.02117 -15.69594 -15.36387 -15.25014 -14.84828 -14.82805 -14.59513 -14.15817 -13.93269 -13.86791 -13.34832 -13.06767 -13.04487 -12.97207 -12.66867 -12.65738 -12.54423 -12.42919 -12.11431 -12.01585 -11.91917 -11.78100 -11.37377 -11.19497 -11.04651 -10.51431 -9.68566 -9.48534 -9.28888 -8.72124 -7.91316 -5.30920 0.39451 0.50235 1.45623 1.48391 1.58366 2.51712 2.79102 3.09477 3.24377 3.41943 3.68346 3.82503 3.96586 4.10137 4.15071 4.23148 4.28711 4.33952 4.43636 4.53807 4.56625 4.68857 4.69591 4.71733 4.84304 4.88771 4.98775 5.01399 5.05582 5.09965 5.18223 5.22206 5.25232 5.38183 5.45928 5.52077 5.63981 5.65048 5.66739 5.71654 6.02033 6.18524 6.36858 6.50067 6.87956 7.12850 7.85076 8.38461 9.15411 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.003342 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.992052 B = 8376.084653 C = 8519.003968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 H 0.079 0.921 4 N -0.675 5.675 5 C 0.110 3.890 6 C -0.125 4.125 7 C 0.182 3.818 8 N -0.608 5.608 9 C -0.271 4.271 10 H 0.063 0.937 11 C -0.044 4.044 12 N -0.928 5.928 13 Si 0.960 3.040 14 H -0.282 1.282 15 H -0.291 1.291 16 H -0.273 1.273 17 C 0.141 3.859 18 C -0.101 4.101 19 C -0.104 4.104 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.112 4.112 23 C -0.156 4.156 24 C 0.092 3.908 25 O -0.508 6.508 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.345 0.655 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.045 0.955 34 H -0.004 1.004 35 H 0.251 0.749 36 H 0.052 0.948 37 H 0.010 0.990 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -6.688 -21.814 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.023 3.977 3 H 0.097 0.903 4 N -0.306 5.306 5 C 0.000 4.000 6 C -0.165 4.165 7 C 0.056 3.944 8 N -0.332 5.332 9 C -0.401 4.401 10 H 0.081 0.919 11 C -0.240 4.240 12 N -0.573 5.573 13 Si 0.787 3.213 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.198 1.198 17 C 0.015 3.985 18 C -0.141 4.141 19 C -0.105 4.105 20 C -0.112 4.112 21 C -0.155 4.155 22 C -0.130 4.130 23 C -0.175 4.175 24 C 0.048 3.952 25 O -0.321 6.321 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.164 0.836 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.014 0.986 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.149 0.851 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.457 -6.820 -21.972 23.052 hybrid contribution -0.159 0.418 1.521 1.585 sum -1.616 -6.402 -20.451 21.490 Atomic orbital electron populations 1.22351 0.95701 1.02272 1.02173 1.20195 0.92943 0.96932 0.87653 0.90335 1.60632 1.56666 1.10018 1.03300 1.21183 0.96397 0.93332 0.89061 1.22134 1.01128 0.98279 0.94916 1.20472 0.86968 0.91245 0.95751 1.44319 1.23909 1.52592 1.12364 1.19413 0.89608 1.45185 0.85883 0.91944 1.25712 0.97764 1.01469 0.99088 1.70263 1.17696 1.50405 1.18946 0.85426 0.78595 0.78503 0.78740 1.20861 1.21729 1.19786 1.21053 0.98239 0.92917 0.86270 1.21802 0.97095 0.97953 0.97222 1.20210 1.01234 0.95352 0.93736 1.21057 0.97570 0.93492 0.99051 1.21473 1.00155 1.01136 0.92727 1.21324 0.99147 0.93761 0.98780 1.21584 1.01011 0.96216 0.98660 1.18461 0.99340 0.84870 0.92578 1.84772 1.40775 1.13785 1.92718 0.91870 0.92858 0.91907 0.83569 0.94896 0.91233 0.92406 0.93687 0.98553 0.94025 0.92947 0.97173 0.92816 0.91378 0.85126 0.84074 0.83508 0.84316 0.73897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 9.15 71.98 0.66 -3.04 16 2 C 0.13 3.12 2.32 44.17 0.10 3.23 16 3 H 0.08 1.97 6.69 -2.38 -0.02 1.96 16 4 N -0.68 -17.39 5.04 -473.16 -2.38 -19.77 16 5 C 0.11 3.50 2.27 44.95 0.10 3.61 16 6 C -0.13 -4.58 5.36 30.67 0.16 -4.41 16 7 C 0.18 8.77 5.37 86.36 0.46 9.23 16 8 N -0.61 -31.10 2.98 -699.12 -2.09 -33.18 16 9 C -0.27 -15.23 9.51 84.03 0.80 -14.43 16 10 H 0.06 3.45 7.95 -2.91 -0.02 3.43 16 11 C -0.04 -2.49 4.68 84.86 0.40 -2.09 16 12 N -0.93 -55.53 11.76 21.65 0.25 -55.28 16 13 Si 0.96 45.13 29.62 68.60 2.03 47.17 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 15 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.14 5.99 6.52 86.36 0.56 6.56 16 18 C -0.10 -3.48 5.57 30.67 0.17 -3.31 16 19 C -0.10 -2.34 5.07 -19.77 -0.10 -2.44 16 20 C -0.09 -1.96 9.32 22.25 0.21 -1.75 16 21 C -0.14 -2.40 10.04 22.28 0.22 -2.17 16 22 C -0.11 -1.81 10.04 22.25 0.22 -1.59 16 23 C -0.16 -2.83 9.99 22.36 0.22 -2.61 16 24 C 0.09 1.95 6.68 22.51 0.15 2.11 16 25 O -0.51 -9.95 12.65 -92.38 -1.17 -11.12 16 26 H 0.06 1.29 8.04 -2.38 -0.02 1.27 16 27 H 0.05 1.24 7.57 -2.39 -0.02 1.23 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.34 8.11 7.47 -89.69 -0.67 7.44 16 30 H 0.03 1.11 7.23 -2.39 -0.02 1.09 16 31 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.04 2.44 6.34 -2.39 -0.02 2.42 16 34 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.03 7.45 -2.39 -0.02 2.01 16 40 H 0.13 2.65 6.92 -2.91 -0.02 2.63 16 41 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 43 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.40 4.82 9.06 -74.06 -0.67 4.15 16 Total: -1.00 -66.09 349.20 0.65 -65.43 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.34 Total: 19.87 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 4.35 Total: -13.12 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.22 Total: -108.23 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.17 Total: -11.12 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.09 0.65 -65.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783508195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.774 kcal (2) G-P(sol) polarization free energy of solvation -66.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.31 seconds