Wall clock time and date at job start Tue Mar 31 2020 07:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47056 * 2 1 4 4 N 1.46501 * 109.47232 * 240.00186 * 2 1 3 5 5 N 1.40101 * 120.00011 * 89.99564 * 4 2 1 6 6 C 1.29806 * 119.99976 * 180.02562 * 5 4 2 7 7 C 1.47384 * 120.00006 * 179.97438 * 6 5 4 8 8 C 1.39793 * 120.08906 * 359.72649 * 7 6 5 9 9 C 1.37735 * 119.91604 * 179.80931 * 8 7 6 10 10 C 1.39071 * 120.08427 * 0.44175 * 9 8 7 11 11 O 1.35670 * 119.91000 * 179.76399 * 10 9 8 12 12 C 1.34814 * 116.99940 * 174.47085 * 11 10 9 13 13 H 1.08008 * 119.99733 * 5.06574 * 12 11 10 14 14 C 1.38616 * 120.00180 * 185.05767 * 12 11 10 15 15 N 1.31580 * 119.99884 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99903 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47288 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47336 * 120.00065 * 16 14 12 19 19 H 1.48502 * 109.47075 * 239.99846 * 16 14 12 20 20 C 1.39066 * 120.17420 * 359.78957 * 10 9 8 21 21 C 1.37733 * 120.08935 * 359.97438 * 20 10 9 22 22 C 1.52998 * 109.47307 * 120.00370 * 2 1 3 23 23 C 1.52995 * 109.47587 * 59.99813 * 22 2 1 24 24 C 1.53002 * 109.46984 * 180.02562 * 22 2 1 25 25 C 1.53002 * 109.46908 * 299.99680 * 22 2 1 26 26 H 1.08998 * 109.47063 * 299.99888 * 1 2 3 27 27 H 1.08998 * 109.47360 * 59.99940 * 1 2 3 28 28 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99976 * 270.00076 * 4 2 1 30 30 H 1.08003 * 120.00103 * 0.02562 * 6 5 4 31 31 H 1.08006 * 120.04374 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.95755 * 180.20950 * 9 8 7 33 33 H 0.96994 * 119.99835 * 180.02562 * 15 14 12 34 34 H 1.07997 * 119.95264 * 179.97438 * 20 10 9 35 35 H 1.07990 * 120.04722 * 179.97438 * 21 20 10 36 36 H 1.08998 * 109.46977 * 60.00140 * 23 22 2 37 37 H 1.08998 * 109.47308 * 180.02562 * 23 22 2 38 38 H 1.09002 * 109.46842 * 300.00473 * 23 22 2 39 39 H 1.08995 * 109.47531 * 59.99904 * 24 22 2 40 40 H 1.09006 * 109.46885 * 179.97438 * 24 22 2 41 41 H 1.08998 * 109.47062 * 299.99543 * 24 22 2 42 42 H 1.09002 * 109.46875 * 59.99923 * 25 22 2 43 43 H 1.08998 * 109.47134 * 180.02562 * 25 22 2 44 44 H 1.09003 * 109.47221 * 300.00226 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 7 2.2517 0.0300 -2.3748 6 6 2.6840 -0.5820 -3.4348 7 6 2.9290 0.1759 -4.6749 8 6 2.6911 1.5529 -4.7132 9 6 2.9250 2.2584 -5.8728 10 6 3.3886 1.6010 -7.0073 11 8 3.6132 2.2986 -8.1490 12 6 4.1696 1.6270 -9.1771 13 1 4.3399 0.5634 -9.0983 14 6 4.5228 2.3015 -10.3355 15 7 4.3156 3.5973 -10.4314 16 14 5.2930 1.3708 -11.7602 17 1 5.4190 -0.0651 -11.4031 18 1 4.4339 1.5086 -12.9637 19 1 6.6389 1.9291 -12.0463 20 6 3.6219 0.2305 -6.9746 21 6 3.3950 -0.4812 -5.8175 22 6 2.0400 -0.7213 1.2492 23 6 1.5300 -2.1638 1.2492 24 6 3.5700 -0.7207 1.2494 25 6 1.5300 -0.0001 2.4984 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.1799 -1.6467 -1.1722 30 1 2.8632 -1.6467 -3.4083 31 1 2.3268 2.0635 -3.8339 32 1 2.7447 3.3229 -5.9022 33 1 4.5624 4.0692 -11.2420 34 1 3.9814 -0.2765 -7.8578 35 1 3.5760 -1.5456 -5.7930 36 1 1.8933 -2.6776 0.3592 37 1 1.8930 -2.6775 2.1394 38 1 0.4400 -2.1638 1.2492 39 1 3.9330 0.3070 1.2497 40 1 3.9334 -1.2342 2.1396 41 1 3.9336 -1.2343 0.3594 42 1 0.4400 0.0000 2.4984 43 1 1.8937 -0.5136 3.3884 44 1 1.8934 1.0276 2.4984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793115931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:46 Heat of formation + Delta-G solvation = 24.617227 kcal Electronic energy + Delta-G solvation = -22043.334682 eV Core-core repulsion = 18768.964867 eV Total energy + Delta-G solvation = -3274.369815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.08319 -38.90659 -36.86960 -35.36719 -32.44797 -31.86945 -30.21543 -29.78459 -28.10091 -27.65646 -26.64249 -25.45089 -23.35243 -22.26691 -21.69429 -19.97940 -18.82818 -18.01102 -17.14335 -16.36250 -16.06705 -14.87153 -14.80235 -14.51598 -14.45831 -14.12110 -14.04537 -13.68245 -13.54274 -13.31067 -12.73569 -12.57199 -12.53398 -12.33986 -12.21007 -12.15234 -11.93498 -11.70221 -11.55682 -11.25303 -11.15161 -10.98575 -10.88822 -10.69621 -10.60239 -10.56757 -10.43368 -9.69197 -9.32274 -8.92152 -8.18094 -8.09626 -6.79307 -6.49010 -4.05837 1.75024 2.29282 3.05743 3.10563 3.12319 3.18110 3.25826 3.94133 4.37883 4.53379 4.61209 4.68459 5.06696 5.08567 5.16995 5.24402 5.24901 5.29249 5.33963 5.36887 5.47158 5.53107 5.61575 5.64221 5.65581 5.74045 5.75927 5.83457 5.87074 5.89760 6.02460 6.11172 6.22253 6.26143 6.33268 6.62240 6.72684 6.92573 7.09800 7.24342 7.38627 7.42119 7.44175 7.81916 7.96617 8.77310 8.96517 9.66373 10.68635 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.043278 B = 0.002372 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.819922 B =11799.331985 C =12042.371993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.196 3.804 3 H 0.078 0.922 4 N -0.665 5.665 5 N -0.251 5.251 6 C 0.095 3.905 7 C -0.148 4.148 8 C -0.037 4.037 9 C -0.199 4.199 10 C 0.162 3.838 11 O -0.173 6.173 12 C -0.391 4.391 13 H 0.095 0.905 14 C 0.039 3.961 15 N -0.859 5.859 16 Si 0.942 3.058 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.238 4.238 21 C -0.047 4.047 22 C -0.078 4.078 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.141 4.141 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.367 0.633 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.270 0.730 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -10.049 20.587 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.090 3.910 3 H 0.096 0.904 4 N -0.403 5.403 5 N -0.058 5.058 6 C -0.116 4.116 7 C -0.152 4.152 8 C -0.058 4.058 9 C -0.218 4.218 10 C 0.107 3.893 11 O -0.075 6.075 12 C -0.467 4.467 13 H 0.112 0.888 14 C -0.166 4.166 15 N -0.494 5.494 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.257 4.257 21 C -0.067 4.067 22 C -0.079 4.079 23 C -0.201 4.201 24 C -0.195 4.195 25 C -0.199 4.199 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.206 0.794 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.506 -8.641 20.897 23.057 hybrid contribution 0.655 -1.826 -0.937 2.154 sum -3.851 -10.467 19.960 22.864 Atomic orbital electron populations 1.22440 0.96735 1.01890 1.01947 1.20450 0.92479 0.96297 0.81740 0.90401 1.47995 1.77545 1.07249 1.07531 1.74215 1.12290 1.25706 0.93553 1.23843 0.99669 0.96320 0.91725 1.17846 1.12257 0.93315 0.91765 1.20807 0.95722 0.92841 0.96406 1.20184 1.09990 0.99916 0.91728 1.19546 0.91997 0.90584 0.87186 1.83952 1.68219 1.37523 1.17777 1.21423 1.39783 0.93546 0.91935 0.88784 1.25326 0.97032 0.95890 0.98356 1.70059 1.43912 1.07411 1.27980 0.85623 0.78691 0.79133 0.79846 1.19026 1.20114 1.20105 1.21042 1.11058 0.94299 0.99349 1.20765 0.96059 0.98205 0.91704 1.20850 0.96152 0.95905 0.94996 1.21928 1.01362 0.95328 1.01476 1.21819 0.94116 1.02074 1.01496 1.21903 1.01318 1.00335 0.96297 0.92007 0.92249 0.92651 0.79438 0.88780 0.86142 0.86380 0.91966 0.85304 0.87220 0.92945 0.92582 0.92075 0.92556 0.92920 0.92508 0.92071 0.92459 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 8.81 37.15 0.33 -1.30 16 2 C 0.20 2.00 2.52 -67.93 -0.17 1.83 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 N -0.67 -8.02 5.30 -4.89 -0.03 -8.05 16 5 N -0.25 -3.81 10.61 32.14 0.34 -3.47 16 6 C 0.09 1.45 10.75 -14.69 -0.16 1.29 16 7 C -0.15 -2.65 5.87 -105.01 -0.62 -3.26 16 8 C -0.04 -0.71 9.57 -39.18 -0.37 -1.08 16 9 C -0.20 -4.26 9.97 -39.46 -0.39 -4.65 16 10 C 0.16 3.90 6.65 -38.97 -0.26 3.64 16 11 O -0.17 -4.88 9.75 0.34 0.00 -4.88 16 12 C -0.39 -10.74 9.48 30.87 0.29 -10.45 16 13 H 0.09 2.38 5.19 -52.48 -0.27 2.11 16 14 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 15 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 16 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 C -0.24 -5.07 9.15 -39.46 -0.36 -5.43 16 21 C -0.05 -0.84 9.78 -39.18 -0.38 -1.22 16 22 C -0.08 -0.61 0.61 -154.51 -0.09 -0.71 16 23 C -0.14 -1.02 7.94 37.15 0.30 -0.73 16 24 C -0.14 -1.17 8.32 37.16 0.31 -0.86 16 25 C -0.14 -0.94 8.12 37.16 0.30 -0.63 16 26 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.50 6.43 -51.93 -0.33 0.16 16 29 H 0.37 3.98 6.78 -182.60 -1.24 2.74 16 30 H 0.09 1.23 8.02 -52.48 -0.42 0.81 16 31 H 0.12 2.11 7.55 -52.48 -0.40 1.72 16 32 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.13 2.72 5.62 -52.49 -0.29 2.42 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.05 0.39 6.49 -51.93 -0.34 0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.55 7.57 -51.93 -0.39 0.15 16 42 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -29.79 357.59 -7.57 -37.36 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.63 Total: 5.26 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -1.38 Total: -22.63 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 1.07 Total: -35.69 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.00 Total: -4.88 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.79 -7.57 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793115931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.978 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds