Wall clock time and date at job start Tue Mar 31 2020 07:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47056 * 2 1 4 4 N 1.46501 * 109.47232 * 240.00186 * 2 1 3 5 5 N 1.40101 * 120.00011 * 89.99564 * 4 2 1 6 6 C 1.29806 * 119.99976 * 180.02562 * 5 4 2 7 7 C 1.47384 * 120.00006 * 179.97438 * 6 5 4 8 8 C 1.39793 * 120.08906 * 359.72649 * 7 6 5 9 9 C 1.37735 * 119.91604 * 179.80931 * 8 7 6 10 10 C 1.39071 * 120.08427 * 0.44175 * 9 8 7 11 11 O 1.35670 * 119.91000 * 179.76399 * 10 9 8 12 12 C 1.34814 * 116.99940 * 174.47085 * 11 10 9 13 13 H 1.08008 * 119.99733 * 5.06574 * 12 11 10 14 14 C 1.38616 * 120.00180 * 185.05767 * 12 11 10 15 15 N 1.31580 * 119.99884 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99903 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47288 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47336 * 120.00065 * 16 14 12 19 19 H 1.48502 * 109.47075 * 239.99846 * 16 14 12 20 20 C 1.39066 * 120.17420 * 359.78957 * 10 9 8 21 21 C 1.37733 * 120.08935 * 359.97438 * 20 10 9 22 22 C 1.52998 * 109.47307 * 120.00370 * 2 1 3 23 23 C 1.52995 * 109.47587 * 59.99813 * 22 2 1 24 24 C 1.53002 * 109.46984 * 180.02562 * 22 2 1 25 25 C 1.53002 * 109.46908 * 299.99680 * 22 2 1 26 26 H 1.08998 * 109.47063 * 299.99888 * 1 2 3 27 27 H 1.08998 * 109.47360 * 59.99940 * 1 2 3 28 28 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99976 * 270.00076 * 4 2 1 30 30 H 1.08003 * 120.00103 * 0.02562 * 6 5 4 31 31 H 1.08006 * 120.04374 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.95755 * 180.20950 * 9 8 7 33 33 H 0.96994 * 119.99835 * 180.02562 * 15 14 12 34 34 H 1.07997 * 119.95264 * 179.97438 * 20 10 9 35 35 H 1.07990 * 120.04722 * 179.97438 * 21 20 10 36 36 H 1.08998 * 109.46977 * 60.00140 * 23 22 2 37 37 H 1.08998 * 109.47308 * 180.02562 * 23 22 2 38 38 H 1.09002 * 109.46842 * 300.00473 * 23 22 2 39 39 H 1.08995 * 109.47531 * 59.99904 * 24 22 2 40 40 H 1.09006 * 109.46885 * 179.97438 * 24 22 2 41 41 H 1.08998 * 109.47062 * 299.99543 * 24 22 2 42 42 H 1.09002 * 109.46875 * 59.99923 * 25 22 2 43 43 H 1.08998 * 109.47134 * 180.02562 * 25 22 2 44 44 H 1.09003 * 109.47221 * 300.00226 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 7 2.2517 0.0300 -2.3748 6 6 2.6840 -0.5820 -3.4348 7 6 2.9290 0.1759 -4.6749 8 6 2.6911 1.5529 -4.7132 9 6 2.9250 2.2584 -5.8728 10 6 3.3886 1.6010 -7.0073 11 8 3.6132 2.2986 -8.1490 12 6 4.1696 1.6270 -9.1771 13 1 4.3399 0.5634 -9.0983 14 6 4.5228 2.3015 -10.3355 15 7 4.3156 3.5973 -10.4314 16 14 5.2930 1.3708 -11.7602 17 1 5.4190 -0.0651 -11.4031 18 1 4.4339 1.5086 -12.9637 19 1 6.6389 1.9291 -12.0463 20 6 3.6219 0.2305 -6.9746 21 6 3.3950 -0.4812 -5.8175 22 6 2.0400 -0.7213 1.2492 23 6 1.5300 -2.1638 1.2492 24 6 3.5700 -0.7207 1.2494 25 6 1.5300 -0.0001 2.4984 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.1799 -1.6467 -1.1722 30 1 2.8632 -1.6467 -3.4083 31 1 2.3268 2.0635 -3.8339 32 1 2.7447 3.3229 -5.9022 33 1 4.5624 4.0692 -11.2420 34 1 3.9814 -0.2765 -7.8578 35 1 3.5760 -1.5456 -5.7930 36 1 1.8933 -2.6776 0.3592 37 1 1.8930 -2.6775 2.1394 38 1 0.4400 -2.1638 1.2492 39 1 3.9330 0.3070 1.2497 40 1 3.9334 -1.2342 2.1396 41 1 3.9336 -1.2343 0.3594 42 1 0.4400 0.0000 2.4984 43 1 1.8937 -0.5136 3.3884 44 1 1.8934 1.0276 2.4984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793115931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:44 Heat of formation + Delta-G solvation = 7.917262 kcal Electronic energy + Delta-G solvation = -22044.058847 eV Core-core repulsion = 18768.964867 eV Total energy + Delta-G solvation = -3275.093980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.72032 -39.79181 -38.46296 -36.62138 -34.31088 -32.97370 -31.84006 -30.94247 -29.20216 -28.23462 -27.62345 -27.22370 -24.43931 -23.71423 -23.11217 -21.40167 -19.84635 -19.59249 -18.81880 -17.65430 -17.09438 -16.31873 -16.10325 -15.90011 -15.54378 -15.49987 -15.15053 -15.04631 -14.73492 -14.41948 -14.27606 -13.99427 -13.59679 -13.51177 -13.21217 -13.04611 -12.85785 -12.78134 -12.68944 -12.55929 -12.35737 -12.25009 -12.16311 -12.06660 -11.64704 -11.49212 -11.37166 -11.17452 -10.82520 -10.79514 -9.78684 -9.48377 -8.46125 -8.23337 -6.12456 0.26609 0.65871 1.37966 1.43812 1.56512 1.81431 2.06917 2.19529 2.92350 3.26646 3.52398 3.67689 3.88619 3.97707 4.00803 4.13542 4.22552 4.41453 4.44043 4.46640 4.54966 4.62214 4.76071 4.79194 4.81216 4.86895 4.91932 4.96955 5.03479 5.07408 5.08721 5.12229 5.16026 5.20457 5.30798 5.34233 5.39407 5.52479 5.56684 5.65255 5.71414 5.88449 6.04667 6.19592 6.42129 6.98797 7.65548 7.79100 8.77375 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.043278 B = 0.002372 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.819922 B =11799.331985 C =12042.371993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.191 3.809 3 H 0.061 0.939 4 N -0.654 5.654 5 N -0.258 5.258 6 C 0.079 3.921 7 C -0.123 4.123 8 C -0.040 4.040 9 C -0.208 4.208 10 C 0.123 3.877 11 O -0.229 6.229 12 C -0.412 4.412 13 H 0.107 0.893 14 C -0.025 4.025 15 N -0.921 5.921 16 Si 1.021 2.979 17 H -0.248 1.248 18 H -0.270 1.270 19 H -0.270 1.270 20 C -0.241 4.241 21 C -0.040 4.040 22 C -0.070 4.070 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.140 4.140 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.378 0.622 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.273 0.727 34 H 0.128 0.872 35 H 0.154 0.846 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 -13.370 23.305 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.086 3.914 3 H 0.080 0.920 4 N -0.393 5.393 5 N -0.065 5.065 6 C -0.131 4.131 7 C -0.126 4.126 8 C -0.061 4.061 9 C -0.227 4.227 10 C 0.071 3.929 11 O -0.135 6.135 12 C -0.488 4.488 13 H 0.124 0.876 14 C -0.222 4.222 15 N -0.559 5.559 16 Si 0.840 3.160 17 H -0.171 1.171 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.260 4.260 21 C -0.060 4.060 22 C -0.072 4.072 23 C -0.200 4.200 24 C -0.194 4.194 25 C -0.198 4.198 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.218 0.782 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.773 -12.001 23.686 26.978 hybrid contribution 0.584 -0.909 -1.236 1.641 sum -4.189 -12.909 22.450 26.234 Atomic orbital electron populations 1.22384 0.95914 1.02372 1.01805 1.20650 0.93066 0.95753 0.81978 0.92031 1.48104 1.76544 1.07846 1.06776 1.74087 1.10488 1.27450 0.94510 1.23690 1.01361 0.97491 0.90604 1.18221 1.08571 0.92834 0.92939 1.20996 0.95561 0.93717 0.95777 1.20342 1.10163 1.00064 0.92168 1.20037 0.93744 0.92078 0.87052 1.83925 1.71097 1.39133 1.19300 1.21931 1.40093 0.94323 0.92406 0.87556 1.26636 0.97455 0.96876 1.01265 1.70208 1.46882 1.09583 1.29213 0.84498 0.77562 0.78367 0.75591 1.17107 1.19478 1.19517 1.21186 1.10850 0.93322 1.00683 1.21133 0.94601 1.00154 0.90158 1.20800 0.95689 0.96475 0.94222 1.21927 1.01648 0.94469 1.01936 1.21814 0.94549 1.01444 1.01619 1.21906 1.01797 1.00127 0.95933 0.90147 0.94461 0.91804 0.78241 0.85548 0.84700 0.86995 0.91848 0.85466 0.82826 0.93228 0.91439 0.91615 0.93571 0.91529 0.93653 0.91326 0.91314 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 8.81 71.98 0.63 -2.09 16 2 C 0.19 3.42 2.52 44.99 0.11 3.53 16 3 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 4 N -0.65 -13.84 5.30 -169.40 -0.90 -14.74 16 5 N -0.26 -7.11 10.61 -52.21 -0.55 -7.67 16 6 C 0.08 2.14 10.75 87.40 0.94 3.08 16 7 C -0.12 -4.09 5.87 -20.11 -0.12 -4.20 16 8 C -0.04 -1.50 9.57 22.53 0.22 -1.29 16 9 C -0.21 -9.25 9.97 22.35 0.22 -9.02 16 10 C 0.12 6.15 6.65 22.67 0.15 6.30 16 11 O -0.23 -13.80 9.75 -21.68 -0.21 -14.01 16 12 C -0.41 -23.74 9.48 67.91 0.64 -23.09 16 13 H 0.11 5.55 5.19 -2.91 -0.02 5.54 16 14 C -0.02 -1.41 5.49 84.82 0.47 -0.94 16 15 N -0.92 -56.59 13.67 21.61 0.30 -56.29 16 16 Si 1.02 42.46 29.55 68.60 2.03 44.49 16 17 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 C -0.24 -10.27 9.15 22.35 0.20 -10.06 16 21 C -0.04 -1.35 9.78 22.53 0.22 -1.13 16 22 C -0.07 -0.91 0.61 -52.18 -0.03 -0.94 16 23 C -0.14 -1.52 7.94 71.98 0.57 -0.95 16 24 C -0.14 -1.99 8.32 71.98 0.60 -1.39 16 25 C -0.14 -1.43 8.12 71.98 0.58 -0.85 16 26 H 0.08 1.02 6.43 -2.39 -0.02 1.01 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.95 6.43 -2.39 -0.02 0.93 16 29 H 0.38 6.83 6.78 -213.32 -1.45 5.38 16 30 H 0.13 2.65 8.02 -2.91 -0.02 2.63 16 31 H 0.14 4.60 7.55 -2.91 -0.02 4.58 16 32 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.13 5.39 5.62 -2.91 -0.02 5.37 16 35 H 0.15 3.83 8.06 -2.92 -0.02 3.81 16 36 H 0.05 0.56 6.49 -2.39 -0.02 0.55 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 0.66 6.43 -2.39 -0.02 0.65 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 41 H 0.04 0.76 7.57 -2.39 -0.02 0.74 16 42 H 0.07 0.61 6.43 -2.39 -0.02 0.60 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -69.29 357.59 5.62 -63.67 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.45 Total: 27.59 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 5.42 Total: -43.05 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.16 Total: -78.69 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.21 Total: -14.01 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -69.29 5.62 -63.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793115931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.585 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds