Wall clock time and date at job start Tue Mar 31 2020 08:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47228 * 2 1 4 4 C 1.52999 * 109.47320 * 120.00725 * 2 1 3 5 5 N 1.46892 * 109.47222 * 174.99916 * 4 2 1 6 6 C 1.46899 * 111.00254 * 66.04313 * 5 4 2 7 7 C 1.46903 * 111.00227 * 189.99829 * 5 4 2 8 8 N 1.46500 * 109.46718 * 240.00156 * 2 1 3 9 9 C 1.34778 * 119.99742 * 85.00506 * 8 2 1 10 10 O 1.21272 * 120.00503 * 359.97438 * 9 8 2 11 11 C 1.50707 * 119.99864 * 180.02562 * 9 8 2 12 12 C 1.50695 * 109.47225 * 179.97438 * 11 9 8 13 13 C 1.37634 * 120.12868 * 264.99858 * 12 11 9 14 14 C 1.38614 * 120.25256 * 179.97438 * 13 12 11 15 15 C 1.38658 * 120.49811 * 0.02562 * 14 13 12 16 16 C 1.37593 * 120.25096 * 0.02562 * 15 14 13 17 17 C 1.40702 * 120.12856 * 84.72246 * 12 11 9 18 18 C 1.41393 * 120.24278 * 359.97438 * 17 12 11 19 19 H 1.07996 * 120.00389 * 333.91204 * 18 17 12 20 20 C 1.39950 * 119.99501 * 153.89885 * 18 17 12 21 21 N 1.30825 * 120.00272 * 343.71816 * 20 18 17 22 22 Si 1.86802 * 119.99902 * 163.71677 * 20 18 17 23 23 H 1.48502 * 109.46973 * 89.99860 * 22 20 18 24 24 H 1.48498 * 109.47239 * 210.00191 * 22 20 18 25 25 H 1.48504 * 109.46855 * 330.00161 * 22 20 18 26 26 H 1.09008 * 109.46627 * 300.00043 * 1 2 3 27 27 H 1.08999 * 109.47010 * 59.99281 * 1 2 3 28 28 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46671 * 294.99260 * 4 2 1 30 30 H 1.08996 * 109.47287 * 54.98939 * 4 2 1 31 31 H 1.08997 * 109.47529 * 60.00122 * 6 5 4 32 32 H 1.09004 * 109.47109 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47310 * 299.99821 * 6 5 4 34 34 H 1.08994 * 109.47192 * 59.99353 * 7 5 4 35 35 H 1.08993 * 109.47606 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.46860 * 300.00149 * 7 5 4 37 37 H 0.96997 * 120.00190 * 265.00090 * 8 2 1 38 38 H 1.09002 * 109.46440 * 299.99162 * 11 9 8 39 39 H 1.08999 * 109.47131 * 59.99154 * 11 9 8 40 40 H 1.08000 * 119.87763 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.75379 * 179.97438 * 14 13 12 42 42 H 1.07998 * 119.87468 * 179.97438 * 15 14 13 43 43 H 1.07999 * 120.12921 * 179.97438 * 16 15 14 44 44 H 0.96998 * 120.00041 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5040 -0.8268 1.1903 6 6 4.1310 0.4991 1.2719 7 6 4.0108 -1.7146 2.2452 8 7 2.0182 -0.6906 -1.1962 9 6 2.1470 -0.0181 -2.3571 10 8 1.8583 1.1585 -2.4117 11 6 2.6487 -0.7287 -3.5879 12 6 2.6990 0.2396 -4.7415 13 6 1.6435 0.3217 -5.6210 14 6 1.6868 1.2118 -6.6827 15 6 2.7915 2.0282 -6.8719 16 6 3.8586 1.9624 -6.0058 17 6 3.8226 1.0673 -4.9204 18 6 4.9101 0.9962 -4.0195 19 1 4.7503 0.6612 -3.0053 20 6 6.1938 1.3597 -4.4423 21 7 6.4589 1.4562 -5.7198 22 14 7.5286 1.7070 -3.1825 23 1 8.2563 0.4501 -2.8730 24 1 8.4793 2.7071 -3.7315 25 1 6.9113 2.2401 -1.9415 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.7518 -0.1584 2.1370 30 1 1.6053 -1.7199 1.2951 31 1 3.8526 0.9756 2.2118 32 1 5.2148 0.3920 1.2256 33 1 3.7912 1.1138 0.4383 34 1 3.5834 -2.7093 2.1194 35 1 5.0971 -1.7745 2.1791 36 1 3.7278 -1.3184 3.2205 37 1 2.2489 -1.6317 -1.1527 38 1 3.6478 -1.1212 -3.3987 39 1 1.9758 -1.5504 -3.8327 40 1 0.7782 -0.3097 -5.4834 41 1 0.8543 1.2693 -7.3682 42 1 2.8148 2.7178 -7.7028 43 1 4.7181 2.5989 -6.1553 44 1 7.3487 1.7078 -6.0127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805430455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:53 Heat of formation + Delta-G solvation = -21.143164 kcal Electronic energy + Delta-G solvation = -23705.696135 eV Core-core repulsion = 20429.342000 eV Total energy + Delta-G solvation = -3276.354135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -39.38372 -37.85099 -36.99198 -34.46832 -33.52868 -31.79085 -30.47307 -29.34537 -27.65201 -26.98860 -26.58894 -24.88594 -22.64999 -21.10400 -20.81239 -20.01000 -19.19328 -17.08306 -16.40479 -16.03658 -15.59345 -15.29356 -14.96548 -14.56026 -14.41658 -14.31208 -13.58470 -13.26308 -13.01540 -12.90294 -12.53258 -12.48818 -12.36682 -12.19366 -11.90290 -11.73271 -11.59264 -11.48253 -11.39131 -11.05622 -10.89979 -10.88073 -10.65464 -10.58691 -10.31895 -9.39070 -9.27869 -9.07396 -8.97471 -8.49478 -8.42488 -7.21611 -7.18977 -6.64911 -4.24298 2.86597 3.07100 3.11693 3.17386 3.34530 3.52701 3.74196 3.97235 4.01037 4.74156 4.75180 5.02116 5.17065 5.24111 5.36606 5.44099 5.46150 5.56459 5.60270 5.67611 5.72597 5.77542 5.92699 6.02407 6.10702 6.18113 6.27151 6.33836 6.38628 6.56163 6.60051 6.86978 6.90877 6.94377 7.09349 7.18378 7.39131 7.51878 7.74524 8.01198 8.14110 8.21777 8.23550 8.41462 8.74976 9.01646 9.07990 9.11524 10.29325 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.006134 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.243553 B = 4563.437223 C = 6335.766945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.084 0.916 4 C 0.047 3.953 5 N -0.540 5.540 6 C 0.022 3.978 7 C 0.025 3.975 8 N -0.725 5.725 9 C 0.517 3.483 10 O -0.528 6.528 11 C -0.071 4.071 12 C -0.177 4.177 13 C -0.082 4.082 14 C -0.240 4.240 15 C -0.108 4.108 16 C -0.160 4.160 17 C 0.129 3.871 18 C -0.453 4.453 19 H 0.076 0.924 20 C 0.077 3.923 21 N -0.797 5.797 22 Si 0.901 3.099 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.261 1.261 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.021 0.979 37 H 0.397 0.603 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -6.399 13.330 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.102 0.898 4 C -0.081 4.081 5 N -0.264 5.264 6 C -0.127 4.127 7 C -0.123 4.123 8 N -0.378 5.378 9 C 0.305 3.695 10 O -0.403 6.403 11 C -0.111 4.111 12 C -0.179 4.179 13 C -0.101 4.101 14 C -0.260 4.260 15 C -0.127 4.127 16 C -0.179 4.179 17 C 0.126 3.874 18 C -0.483 4.483 19 H 0.094 0.906 20 C -0.140 4.140 21 N -0.423 5.423 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.185 1.185 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.231 0.769 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.423 -5.680 12.673 14.575 hybrid contribution 0.604 0.096 1.353 1.485 sum -3.819 -5.584 14.026 15.572 Atomic orbital electron populations 1.22152 0.95608 1.01807 1.02441 1.20797 0.93180 0.97691 0.84388 0.89789 1.22471 0.88041 1.00892 0.96731 1.61900 1.05156 1.12366 1.46931 1.22452 1.00004 0.89723 1.00473 1.22381 1.01017 0.96993 0.91907 1.45939 1.69032 1.13852 1.09004 1.21130 0.76561 0.87597 0.84240 1.90658 1.48656 1.16078 1.84878 1.20252 1.02007 0.97378 0.91420 1.19085 0.98223 1.02276 0.98334 1.20291 0.96087 0.98172 0.95513 1.20289 0.99314 1.04479 1.01891 1.20661 0.94703 0.98782 0.98552 1.21286 0.97934 1.01075 0.97633 1.17336 0.90758 0.88017 0.91243 1.19480 0.91455 1.39064 0.98332 0.90638 1.25872 0.99965 0.92722 0.95454 1.69827 1.22252 1.34941 1.15317 0.86429 0.80185 0.78955 0.81861 1.19580 1.20252 1.18535 0.92341 0.91569 0.92668 0.93866 0.90412 0.95932 0.91329 0.90483 0.91462 0.91316 0.96034 0.76931 0.88654 0.90913 0.89869 0.89793 0.89705 0.86603 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.15 1.93 2.35 -67.93 -0.16 1.78 16 3 H 0.08 1.35 6.23 -51.93 -0.32 1.03 16 4 C 0.05 0.50 4.52 -3.83 -0.02 0.48 16 5 N -0.54 -6.35 4.74 -251.27 -1.19 -7.54 16 6 C 0.02 0.27 9.32 60.06 0.56 0.83 16 7 C 0.03 0.23 9.57 60.07 0.57 0.81 16 8 N -0.72 -10.87 4.80 -53.81 -0.26 -11.13 16 9 C 0.52 10.24 7.40 -10.98 -0.08 10.16 16 10 O -0.53 -12.77 15.70 5.56 0.09 -12.68 16 11 C -0.07 -1.43 5.18 -29.03 -0.15 -1.58 16 12 C -0.18 -4.38 4.43 -103.92 -0.46 -4.84 16 13 C -0.08 -1.95 9.66 -39.66 -0.38 -2.34 16 14 C -0.24 -5.76 10.05 -39.29 -0.39 -6.15 16 15 C -0.11 -2.72 10.02 -39.66 -0.40 -3.12 16 16 C -0.16 -4.38 8.69 -38.87 -0.34 -4.72 16 17 C 0.13 3.52 5.56 -106.82 -0.59 2.93 16 18 C -0.45 -12.17 8.14 -37.74 -0.31 -12.48 16 19 H 0.08 1.99 6.67 -52.49 -0.35 1.64 16 20 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 21 N -0.80 -21.01 10.95 55.55 0.61 -20.40 16 22 Si 0.90 19.25 29.59 -169.99 -5.03 14.22 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 26 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.42 8.12 -51.92 -0.42 0.00 16 30 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.08 1.17 6.58 -51.93 -0.34 0.83 16 34 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 35 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 36 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.40 5.05 8.60 -40.82 -0.35 4.70 16 38 H 0.10 1.93 7.08 -51.93 -0.37 1.56 16 39 H 0.07 1.24 8.05 -51.93 -0.42 0.83 16 40 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.08 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.12 3.25 6.20 -52.49 -0.33 2.93 16 44 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -31.01 359.79 -9.35 -40.36 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.10 Total: 9.66 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.89 Total: -17.92 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.84 Total: -39.06 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.01 -9.35 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805430455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.216 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds