Wall clock time and date at job start Tue Mar 31 2020 07:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.57173 * 2 1 4 4 C 1.53118 * 109.51874 * 239.84310 * 2 1 3 5 5 C 1.53038 * 109.28347 * 297.74544 * 4 2 1 6 6 N 1.46841 * 109.52235 * 300.82829 * 5 4 2 7 7 C 1.46847 * 111.20298 * 61.73980 * 6 5 4 8 8 C 1.53040 * 109.51820 * 298.25569 * 7 6 5 9 9 H 1.08997 * 109.53693 * 299.21768 * 8 7 6 10 10 N 1.46900 * 109.50256 * 179.11872 * 8 7 6 11 11 C 1.46904 * 111.00117 * 85.19846 * 10 8 7 12 12 C 1.50693 * 109.47229 * 180.02562 * 11 10 8 13 13 C 1.38310 * 119.93230 * 89.99777 * 12 11 10 14 14 C 1.38101 * 120.07029 * 180.02562 * 13 12 11 15 15 C 1.38879 * 119.93021 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.07039 * 179.97438 * 15 14 13 17 17 C 1.34833 * 116.99784 * 5.52986 * 16 15 14 18 18 H 1.07997 * 119.99763 * 354.94860 * 17 16 15 19 19 C 1.38658 * 119.99701 * 174.94485 * 17 16 15 20 20 N 1.31558 * 119.99324 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00043 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47318 * 269.99694 * 21 19 17 23 23 H 1.48498 * 109.46700 * 150.00272 * 21 19 17 24 24 H 1.48494 * 109.47011 * 30.00298 * 21 19 17 25 25 C 1.38883 * 119.86438 * 0.24989 * 15 14 13 26 26 C 1.38109 * 119.92576 * 359.49389 * 25 15 14 27 27 H 1.08998 * 109.47127 * 299.83705 * 1 2 3 28 28 H 1.09002 * 109.47295 * 59.84362 * 1 2 3 29 29 H 1.09001 * 109.47224 * 179.83994 * 1 2 3 30 30 H 1.09005 * 109.50553 * 57.69373 * 4 2 1 31 31 H 1.09008 * 109.50326 * 177.80957 * 4 2 1 32 32 H 1.09005 * 109.45788 * 60.83824 * 5 4 2 33 33 H 1.08998 * 109.46454 * 180.80374 * 5 4 2 34 34 H 1.00896 * 111.00343 * 297.63852 * 6 5 4 35 35 H 1.09000 * 109.46498 * 178.24421 * 7 6 5 36 36 H 1.08999 * 109.46109 * 58.27150 * 7 6 5 37 37 H 1.00898 * 111.00237 * 209.15700 * 10 8 7 38 38 H 1.08991 * 109.46876 * 59.99689 * 11 10 8 39 39 H 1.09007 * 109.46822 * 300.00295 * 11 10 8 40 40 H 1.07997 * 119.96371 * 0.02562 * 13 12 11 41 41 H 1.07998 * 120.03346 * 179.97438 * 14 13 12 42 42 H 0.97008 * 119.99656 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.03752 * 179.72846 * 25 15 14 44 44 H 1.07996 * 119.96255 * 180.23588 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7250 -1.2479 5 6 1.5766 -2.1826 -1.2118 6 7 2.0924 -2.8324 -0.0002 7 6 1.5766 -2.1827 1.2115 8 6 2.0417 -0.7251 1.2477 9 1 3.1310 -0.6905 1.2677 10 7 1.5081 -0.0697 2.4492 11 6 2.3791 -0.3055 3.6084 12 6 1.8004 0.3798 4.8193 13 6 0.9151 -0.2972 5.6383 14 6 0.3826 0.3283 6.7484 15 6 0.7365 1.6388 7.0418 16 8 0.2144 2.2566 8.1320 17 6 -0.5509 1.5081 8.9518 18 1 -0.7914 0.4895 8.6853 19 6 -1.0290 2.0462 10.1369 20 7 -1.7753 1.3156 10.9370 21 14 -0.6122 3.8077 10.5980 22 1 0.6464 3.8286 11.3859 23 1 -1.7148 4.3805 11.4113 24 1 -0.4370 4.6142 9.3636 25 6 1.6213 2.3179 6.2143 26 6 2.1545 1.6851 5.1086 27 1 -0.3633 0.5113 0.8914 28 1 -0.3634 0.5163 -0.8886 29 1 -0.3634 -1.0277 -0.0029 30 1 1.6456 -0.2386 -2.1394 31 1 3.1310 -0.6910 -1.2675 32 1 0.4871 -2.2161 -1.2060 33 1 1.9513 -2.7052 -2.0918 34 1 3.1013 -2.8487 -0.0001 35 1 1.9513 -2.7054 2.0915 36 1 0.4871 -2.2163 1.2058 37 1 1.3736 0.9180 2.2929 38 1 3.3721 0.0944 3.4040 39 1 2.4507 -1.3768 3.7972 40 1 0.6399 -1.3162 5.4094 41 1 -0.3090 -0.2008 7.3873 42 1 -2.1095 1.6919 11.7663 43 1 1.8951 3.3385 6.4373 44 1 2.8455 2.2114 4.4668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817919898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:19 Heat of formation + Delta-G solvation = -7.368206 kcal Electronic energy + Delta-G solvation = -22691.344927 eV Core-core repulsion = 19415.588119 eV Total energy + Delta-G solvation = -3275.756808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.22 seconds Orbital eigenvalues (eV) -39.92239 -39.15415 -37.06469 -35.03152 -33.03116 -32.39113 -30.74091 -30.24748 -28.66394 -26.82046 -25.59939 -24.11905 -23.55247 -22.09841 -21.98956 -20.39905 -19.28096 -17.88842 -17.26820 -16.48174 -15.79529 -15.51972 -15.15259 -14.85037 -14.69732 -14.32626 -14.06217 -13.78426 -13.56880 -13.45891 -13.25427 -12.86382 -12.78112 -12.52497 -12.23521 -12.06004 -12.01935 -11.72845 -11.55806 -11.33161 -11.15731 -10.93973 -10.75794 -10.74033 -10.67141 -10.39429 -10.14885 -9.38926 -8.87737 -8.77523 -8.31604 -8.24563 -7.32942 -6.42269 -4.08839 2.12625 2.17616 3.21220 3.24880 3.39459 3.92786 4.21363 4.22963 4.43819 4.49953 4.57560 4.72136 4.84947 4.94924 5.04783 5.09664 5.10997 5.23281 5.29026 5.35109 5.42983 5.48350 5.57975 5.64377 5.67861 5.72900 5.74095 5.79185 5.83383 5.94197 6.05420 6.13732 6.27348 6.34047 6.56342 6.68725 6.79113 6.98184 7.10528 7.10737 7.22546 7.32820 7.41061 7.61078 7.80109 8.03324 8.92973 9.55363 10.65392 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036418 B = 0.002745 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.659033 B =10197.577981 C =10370.761094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.066 0.934 4 C -0.151 4.151 5 C 0.054 3.946 6 N -0.684 5.684 7 C 0.066 3.934 8 C 0.057 3.943 9 H 0.037 0.963 10 N -0.674 5.674 11 C 0.117 3.883 12 C -0.176 4.176 13 C -0.049 4.049 14 C -0.222 4.222 15 C 0.162 3.838 16 O -0.218 6.218 17 C -0.389 4.389 18 H 0.107 0.893 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.194 4.194 26 C -0.071 4.071 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.336 0.664 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.341 0.659 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.279 0.721 43 H 0.115 0.885 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.376 -3.689 -22.025 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.084 0.916 4 C -0.191 4.191 5 C -0.076 4.076 6 N -0.312 5.312 7 C -0.064 4.064 8 C -0.055 4.055 9 H 0.055 0.945 10 N -0.306 5.306 11 C -0.011 4.011 12 C -0.177 4.177 13 C -0.068 4.068 14 C -0.241 4.241 15 C 0.109 3.891 16 O -0.123 6.123 17 C -0.465 4.465 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.517 5.517 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.213 4.213 26 C -0.090 4.090 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.153 0.847 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.160 0.840 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.090 0.910 43 H 0.133 0.867 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.343 -4.503 -21.566 23.223 hybrid contribution 1.340 2.138 0.196 2.530 sum 8.682 -2.365 -21.370 23.188 Atomic orbital electron populations 1.21836 0.94059 1.02384 1.01868 1.21299 0.97285 0.98752 0.93911 0.91607 1.22305 1.00621 0.98011 0.98128 1.22076 1.01060 0.91575 0.92898 1.60744 1.13849 1.54522 1.02055 1.22078 1.01563 0.90759 0.92012 1.22295 0.96476 0.96773 0.89977 0.94471 1.60590 1.49591 1.17691 1.02701 1.20689 0.92442 0.99729 0.88257 1.19171 1.04525 0.95353 0.98692 1.20630 0.94485 0.98576 0.93134 1.21292 1.06123 0.96016 1.00691 1.19139 0.91294 0.91027 0.87619 1.83569 1.58994 1.38512 1.31188 1.20779 1.27363 0.98134 1.00222 0.87582 1.24471 0.95466 0.99740 0.94336 1.69651 1.33133 1.37084 1.11846 0.86178 0.78165 0.83340 0.79202 1.19902 1.20774 1.18388 1.20154 1.02584 1.00648 0.97924 1.20467 0.98608 0.93940 0.95995 0.91339 0.93362 0.92126 0.91297 0.92257 0.90442 0.90983 0.84651 0.90848 0.89761 0.83967 0.95561 0.91038 0.87175 0.84973 0.91043 0.86681 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.42 37.16 0.31 -0.97 16 2 C -0.09 -0.78 2.61 -90.50 -0.24 -1.02 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -1.07 5.58 -26.65 -0.15 -1.22 16 5 C 0.05 0.40 6.31 -3.84 -0.02 0.37 16 6 N -0.68 -5.84 6.87 -113.82 -0.78 -6.63 16 7 C 0.07 0.64 5.81 -3.83 -0.02 0.62 16 8 C 0.06 0.54 2.33 -67.63 -0.16 0.38 16 9 H 0.04 0.36 7.80 -51.93 -0.41 -0.04 16 10 N -0.67 -7.67 5.54 -107.91 -0.60 -8.27 16 11 C 0.12 1.47 5.61 -4.98 -0.03 1.44 16 12 C -0.18 -2.82 5.40 -104.58 -0.56 -3.38 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 14 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 15 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 16 O -0.22 -5.75 8.59 0.04 0.00 -5.75 16 17 C -0.39 -10.99 9.95 30.89 0.31 -10.68 16 18 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 19 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 20 N -0.88 -25.45 13.96 55.48 0.77 -24.67 16 21 Si 0.91 21.69 28.62 -169.99 -4.86 16.82 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.19 -3.80 9.99 -39.39 -0.39 -4.19 16 26 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 27 H 0.07 0.70 7.34 -51.93 -0.38 0.32 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.56 4.92 -51.93 -0.26 0.30 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.08 0.62 6.51 -51.93 -0.34 0.28 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.34 2.53 8.86 -39.29 -0.35 2.18 16 35 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 36 H 0.08 0.92 6.51 -51.93 -0.34 0.59 16 37 H 0.34 3.93 8.07 -39.29 -0.32 3.61 16 38 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 39 H 0.07 0.88 7.41 -51.92 -0.38 0.50 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 42 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -28.53 344.78 -9.38 -37.92 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.67 Total: 6.88 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.44 Total: -21.49 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.61 Total: -39.57 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.00 Total: -5.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.53 -9.38 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817919898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.549 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.22 seconds