Wall clock time and date at job start Tue Mar 31 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.57173 * 2 1 4 4 C 1.53118 * 109.51874 * 239.84310 * 2 1 3 5 5 C 1.53038 * 109.28347 * 297.74544 * 4 2 1 6 6 N 1.46841 * 109.52235 * 300.82829 * 5 4 2 7 7 C 1.46847 * 111.20298 * 61.73980 * 6 5 4 8 8 C 1.53040 * 109.51820 * 298.25569 * 7 6 5 9 9 H 1.08997 * 109.53693 * 299.21768 * 8 7 6 10 10 N 1.46900 * 109.50256 * 179.11872 * 8 7 6 11 11 C 1.46904 * 111.00117 * 85.19846 * 10 8 7 12 12 C 1.50693 * 109.47229 * 180.02562 * 11 10 8 13 13 C 1.38310 * 119.93230 * 89.99777 * 12 11 10 14 14 C 1.38101 * 120.07029 * 180.02562 * 13 12 11 15 15 C 1.38879 * 119.93021 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.07039 * 179.97438 * 15 14 13 17 17 C 1.34833 * 116.99784 * 5.52986 * 16 15 14 18 18 H 1.07997 * 119.99763 * 354.94860 * 17 16 15 19 19 C 1.38658 * 119.99701 * 174.94485 * 17 16 15 20 20 N 1.31558 * 119.99324 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00043 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47318 * 269.99694 * 21 19 17 23 23 H 1.48498 * 109.46700 * 150.00272 * 21 19 17 24 24 H 1.48494 * 109.47011 * 30.00298 * 21 19 17 25 25 C 1.38883 * 119.86438 * 0.24989 * 15 14 13 26 26 C 1.38109 * 119.92576 * 359.49389 * 25 15 14 27 27 H 1.08998 * 109.47127 * 299.83705 * 1 2 3 28 28 H 1.09002 * 109.47295 * 59.84362 * 1 2 3 29 29 H 1.09001 * 109.47224 * 179.83994 * 1 2 3 30 30 H 1.09005 * 109.50553 * 57.69373 * 4 2 1 31 31 H 1.09008 * 109.50326 * 177.80957 * 4 2 1 32 32 H 1.09005 * 109.45788 * 60.83824 * 5 4 2 33 33 H 1.08998 * 109.46454 * 180.80374 * 5 4 2 34 34 H 1.00896 * 111.00343 * 297.63852 * 6 5 4 35 35 H 1.09000 * 109.46498 * 178.24421 * 7 6 5 36 36 H 1.08999 * 109.46109 * 58.27150 * 7 6 5 37 37 H 1.00898 * 111.00237 * 209.15700 * 10 8 7 38 38 H 1.08991 * 109.46876 * 59.99689 * 11 10 8 39 39 H 1.09007 * 109.46822 * 300.00295 * 11 10 8 40 40 H 1.07997 * 119.96371 * 0.02562 * 13 12 11 41 41 H 1.07998 * 120.03346 * 179.97438 * 14 13 12 42 42 H 0.97008 * 119.99656 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.03752 * 179.72846 * 25 15 14 44 44 H 1.07996 * 119.96255 * 180.23588 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7250 -1.2479 5 6 1.5766 -2.1826 -1.2118 6 7 2.0924 -2.8324 -0.0002 7 6 1.5766 -2.1827 1.2115 8 6 2.0417 -0.7251 1.2477 9 1 3.1310 -0.6905 1.2677 10 7 1.5081 -0.0697 2.4492 11 6 2.3791 -0.3055 3.6084 12 6 1.8004 0.3798 4.8193 13 6 0.9151 -0.2972 5.6383 14 6 0.3826 0.3283 6.7484 15 6 0.7365 1.6388 7.0418 16 8 0.2144 2.2566 8.1320 17 6 -0.5509 1.5081 8.9518 18 1 -0.7914 0.4895 8.6853 19 6 -1.0290 2.0462 10.1369 20 7 -1.7753 1.3156 10.9370 21 14 -0.6122 3.8077 10.5980 22 1 0.6464 3.8286 11.3859 23 1 -1.7148 4.3805 11.4113 24 1 -0.4370 4.6142 9.3636 25 6 1.6213 2.3179 6.2143 26 6 2.1545 1.6851 5.1086 27 1 -0.3633 0.5113 0.8914 28 1 -0.3634 0.5163 -0.8886 29 1 -0.3634 -1.0277 -0.0029 30 1 1.6456 -0.2386 -2.1394 31 1 3.1310 -0.6910 -1.2675 32 1 0.4871 -2.2161 -1.2060 33 1 1.9513 -2.7052 -2.0918 34 1 3.1013 -2.8487 -0.0001 35 1 1.9513 -2.7054 2.0915 36 1 0.4871 -2.2163 1.2058 37 1 1.3736 0.9180 2.2929 38 1 3.3721 0.0944 3.4040 39 1 2.4507 -1.3768 3.7972 40 1 0.6399 -1.3162 5.4094 41 1 -0.3090 -0.2008 7.3873 42 1 -2.1095 1.6919 11.7663 43 1 1.8951 3.3385 6.4373 44 1 2.8455 2.2114 4.4668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817919898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:16 Heat of formation + Delta-G solvation = -26.633265 kcal Electronic energy + Delta-G solvation = -22692.180323 eV Core-core repulsion = 19415.588119 eV Total energy + Delta-G solvation = -3276.592204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -40.96783 -40.51171 -38.62476 -36.05620 -34.46203 -33.72927 -31.91114 -31.75295 -29.71815 -27.76558 -27.23573 -25.40288 -24.26423 -23.67264 -22.81052 -21.84638 -20.01750 -19.79650 -19.08819 -17.24440 -16.77380 -16.73674 -16.21194 -15.99207 -15.81673 -15.65672 -15.54330 -15.36738 -14.98620 -14.46301 -14.30034 -14.12923 -14.08044 -13.96790 -13.51432 -13.25602 -13.02096 -12.70743 -12.55662 -12.46553 -12.39688 -12.29434 -12.16918 -11.89307 -11.83437 -11.44132 -11.28173 -11.17463 -10.89847 -9.79727 -9.53477 -9.14037 -8.94238 -8.50470 -6.23150 0.57871 0.62765 1.30822 1.35075 1.51561 2.27649 2.72275 3.00633 3.12807 3.31406 3.56658 3.74688 3.85029 4.02398 4.05574 4.07300 4.17868 4.29500 4.36639 4.45814 4.48338 4.56960 4.59344 4.69059 4.77476 4.82423 4.86172 4.95570 4.99575 5.04330 5.05901 5.15763 5.24383 5.26500 5.31600 5.39413 5.55744 5.57665 5.76136 5.82781 5.91095 5.96526 6.22215 6.29057 6.46523 6.54314 6.83837 7.58394 8.61334 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036418 B = 0.002745 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.659033 B =10197.577981 C =10370.761094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.144 4.144 5 C 0.053 3.947 6 N -0.689 5.689 7 C 0.071 3.929 8 C 0.064 3.936 9 H 0.045 0.955 10 N -0.682 5.682 11 C 0.122 3.878 12 C -0.148 4.148 13 C -0.054 4.054 14 C -0.239 4.239 15 C 0.120 3.880 16 O -0.246 6.246 17 C -0.399 4.399 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.192 4.192 26 C -0.061 4.061 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.344 0.656 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.343 0.657 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.285 0.715 43 H 0.128 0.872 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -2.875 -25.117 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.184 4.184 5 C -0.076 4.076 6 N -0.318 5.318 7 C -0.060 4.060 8 C -0.048 4.048 9 H 0.062 0.938 10 N -0.314 5.314 11 C -0.006 4.006 12 C -0.149 4.149 13 C -0.072 4.072 14 C -0.258 4.258 15 C 0.071 3.929 16 O -0.153 6.153 17 C -0.476 4.476 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.211 4.211 26 C -0.080 4.080 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.162 0.838 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.162 0.838 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.147 0.853 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.146 0.854 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.791 -3.708 -24.708 26.835 hybrid contribution 0.722 1.701 0.803 2.015 sum 10.513 -2.008 -23.905 26.192 Atomic orbital electron populations 1.21787 0.94676 1.01835 1.01495 1.21289 0.96671 0.99005 0.94024 0.91222 1.22249 1.01008 0.97407 0.97710 1.22103 1.00628 0.92062 0.92802 1.60712 1.14482 1.54661 1.01973 1.21951 1.00564 0.91060 0.92394 1.22265 0.96704 0.96343 0.89481 0.93756 1.60503 1.49708 1.18008 1.03187 1.20659 0.93178 0.99781 0.87006 1.19651 1.01619 0.95028 0.98608 1.20870 0.94617 0.99548 0.92204 1.21278 1.06600 0.96045 1.01893 1.19694 0.93197 0.92186 0.87844 1.83510 1.60557 1.38657 1.32589 1.20705 1.28137 0.97561 1.01177 0.90308 1.25305 0.95462 1.04010 0.94172 1.69739 1.35006 1.39049 1.12733 0.85192 0.78526 0.78080 0.78754 1.19021 1.19191 1.18683 1.20497 1.01409 1.01290 0.97929 1.20938 0.98061 0.93978 0.94977 0.92940 0.92477 0.92782 0.90347 0.91518 0.91275 0.89704 0.83769 0.91586 0.91380 0.83778 0.93423 0.90466 0.85349 0.87749 0.90567 0.85405 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.42 71.98 0.61 -1.62 16 2 C -0.09 -1.25 2.61 -10.72 -0.03 -1.28 16 3 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.14 -1.56 5.58 30.65 0.17 -1.39 16 5 C 0.05 0.65 6.31 86.33 0.54 1.20 16 6 N -0.69 -10.14 6.87 -514.01 -3.53 -13.67 16 7 C 0.07 1.22 5.81 86.33 0.50 1.73 16 8 C 0.06 1.00 2.33 44.97 0.10 1.11 16 9 H 0.04 0.68 7.80 -2.39 -0.02 0.66 16 10 N -0.68 -13.32 5.54 -495.31 -2.75 -16.07 16 11 C 0.12 2.58 5.61 85.55 0.48 3.06 16 12 C -0.15 -4.29 5.40 -19.84 -0.11 -4.40 16 13 C -0.05 -1.89 9.69 22.25 0.22 -1.68 16 14 C -0.24 -10.70 9.17 22.39 0.21 -10.49 16 15 C 0.12 5.65 6.65 22.58 0.15 5.80 16 16 O -0.25 -13.51 8.59 -22.77 -0.20 -13.70 16 17 C -0.40 -23.92 9.95 67.92 0.68 -23.25 16 18 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 19 C 0.01 0.51 5.49 84.83 0.47 0.98 16 20 N -0.92 -55.95 13.96 21.61 0.30 -55.65 16 21 Si 0.97 45.85 28.62 68.60 1.96 47.81 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.19 -7.24 9.99 22.39 0.22 -7.02 16 26 C -0.06 -1.79 9.69 22.25 0.22 -1.58 16 27 H 0.05 1.00 7.34 -2.39 -0.02 0.98 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.93 4.92 -2.39 -0.01 0.91 16 30 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.97 6.51 -2.38 -0.02 0.96 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.34 4.18 8.86 -89.70 -0.79 3.39 16 35 H 0.07 1.23 7.49 -2.39 -0.02 1.21 16 36 H 0.07 1.41 6.51 -2.39 -0.02 1.39 16 37 H 0.34 6.66 8.07 -89.70 -0.72 5.94 16 38 H 0.05 0.87 8.00 -2.39 -0.02 0.85 16 39 H 0.08 1.62 7.41 -2.38 -0.02 1.60 16 40 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 41 H 0.10 5.20 5.64 -2.91 -0.02 5.18 16 42 H 0.28 15.77 8.31 -92.70 -0.77 15.00 16 43 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -65.32 344.78 -0.28 -65.60 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.50 Total: 24.52 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 4.43 Total: -38.84 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -5.97 Total: -85.39 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.20 Total: -13.70 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.96 Total: 47.81 kcal Total: -65.32 -0.28 -65.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817919898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.971 kcal (2) G-P(sol) polarization free energy of solvation -65.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds