Wall clock time and date at job start Tue Mar 31 2020 08:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47157 * 2 1 4 4 N 1.46901 * 109.46949 * 119.99697 * 2 1 3 5 5 C 1.46907 * 111.00098 * 275.00169 * 4 2 1 6 6 C 1.50700 * 109.47297 * 180.02562 * 5 4 2 7 7 C 1.38299 * 119.92900 * 269.72740 * 6 5 4 8 8 C 1.38098 * 120.06920 * 179.72403 * 7 6 5 9 9 C 1.38878 * 119.92879 * 0.54835 * 8 7 6 10 10 O 1.35757 * 120.07146 * 179.74896 * 9 8 7 11 11 C 1.34828 * 116.99966 * 174.44573 * 10 9 8 12 12 H 1.07999 * 120.00466 * 5.04726 * 11 10 9 13 13 C 1.38655 * 119.99486 * 185.05619 * 11 10 9 14 14 N 1.31561 * 119.99401 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00373 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47218 * 89.99817 * 15 13 11 17 17 H 1.48495 * 109.47247 * 210.00187 * 15 13 11 18 18 H 1.48502 * 109.47011 * 330.00252 * 15 13 11 19 19 C 1.38879 * 119.86127 * 359.72370 * 9 8 7 20 20 C 1.38100 * 119.93368 * 0.02562 * 19 9 8 21 21 C 1.53001 * 109.47291 * 239.99566 * 2 1 3 22 22 H 1.08997 * 109.87967 * 300.42254 * 21 2 1 23 23 C 1.54321 * 109.88858 * 179.22492 * 21 2 1 24 24 C 1.55132 * 103.01652 * 218.31245 * 23 21 2 25 25 C 1.54906 * 101.65931 * 35.65013 * 24 23 21 26 26 N 1.47436 * 109.88830 * 61.45333 * 21 2 1 27 27 H 1.09009 * 109.46975 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47339 * 300.00086 * 1 2 3 29 29 H 1.08996 * 109.47276 * 60.00608 * 1 2 3 30 30 H 1.00899 * 111.00603 * 38.95351 * 4 2 1 31 31 H 1.08998 * 109.46912 * 300.00064 * 5 4 2 32 32 H 1.08999 * 109.46962 * 59.99991 * 5 4 2 33 33 H 1.08005 * 119.96479 * 0.02562 * 7 6 5 34 34 H 1.07997 * 120.03681 * 180.26914 * 8 7 6 35 35 H 0.96999 * 119.99628 * 179.97438 * 14 13 11 36 36 H 1.08007 * 120.03615 * 180.02562 * 19 9 8 37 37 H 1.07996 * 119.96855 * 180.02562 * 20 19 9 38 38 H 1.08997 * 110.70317 * 336.69323 * 23 21 2 39 39 H 1.08998 * 110.70416 * 99.92777 * 23 21 2 40 40 H 1.09001 * 110.99120 * 277.55837 * 24 23 21 41 41 H 1.09003 * 110.99263 * 153.74763 * 24 23 21 42 42 H 1.08999 * 110.37912 * 204.09990 * 25 24 23 43 43 H 1.09004 * 110.46698 * 81.80454 * 25 24 23 44 44 H 1.00908 * 110.99974 * 356.15235 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3470 6 6 2.5884 -0.5213 3.5559 7 6 1.6941 -1.1471 4.4052 8 6 2.1550 -1.8345 5.5107 9 6 3.5173 -1.8874 5.7754 10 8 3.9732 -2.5580 6.8641 11 6 5.3101 -2.6681 6.9998 12 1 5.9667 -2.1641 6.3060 13 6 5.8421 -3.4286 8.0299 14 7 7.1466 -3.5365 8.1619 15 14 4.7066 -4.3000 9.2302 16 1 4.3962 -5.6596 8.7199 17 1 5.3731 -4.4078 10.5528 18 1 3.4477 -3.5252 9.3720 19 6 4.4124 -1.2532 4.9237 20 6 3.9456 -0.5717 3.8169 21 6 2.0400 -0.7213 -1.2492 22 1 1.6743 -1.7480 -1.2596 23 6 3.5831 -0.7100 -1.2687 24 6 3.9119 -0.4959 -2.7696 25 6 2.7687 0.4528 -3.2084 26 7 1.5826 -0.0136 -2.4590 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.4496 -1.4979 1.4102 31 1 2.7588 1.0463 2.1183 32 1 1.0870 0.6164 2.5525 33 1 0.6345 -1.1022 4.2010 34 1 1.4565 -2.3266 6.1712 35 1 7.5188 -4.0682 8.8828 36 1 5.4725 -1.2929 5.1266 37 1 4.6411 -0.0787 3.1540 38 1 3.9700 0.1132 -0.6682 39 1 3.9799 -1.6631 -0.9193 40 1 3.8695 -1.4376 -3.3168 41 1 4.8842 -0.0185 -2.8921 42 1 2.5967 0.3691 -4.2814 43 1 3.0049 1.4831 -2.9419 44 1 0.9793 0.7591 -2.2195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817920053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:01 Heat of formation + Delta-G solvation = -5.065443 kcal Electronic energy + Delta-G solvation = -22512.992441 eV Core-core repulsion = 19237.335489 eV Total energy + Delta-G solvation = -3275.656953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.51902 -39.09778 -37.19437 -35.71022 -32.48955 -31.76046 -30.33202 -30.24287 -28.68768 -27.94586 -25.63518 -24.09180 -22.38976 -22.09231 -21.10953 -20.66337 -20.14220 -17.89301 -17.30382 -16.73844 -16.13853 -15.43635 -14.94005 -14.87634 -14.29762 -14.04752 -13.89921 -13.80560 -13.46112 -13.34159 -13.26864 -12.78159 -12.66291 -12.47114 -12.42096 -12.21446 -12.09412 -11.64855 -11.37040 -11.27684 -11.24004 -10.97160 -10.82373 -10.75482 -10.69257 -10.62369 -10.15565 -9.39535 -8.88216 -8.71130 -8.36178 -8.25730 -7.33345 -6.42695 -4.09300 2.12171 2.16875 3.21073 3.24900 3.39227 3.86204 4.22670 4.27324 4.54228 4.57191 4.60038 4.68415 4.84371 4.94582 4.98830 5.06545 5.09793 5.27049 5.31692 5.35649 5.41374 5.49533 5.57922 5.64334 5.69628 5.72252 5.77428 5.83103 5.86461 5.94553 6.04720 6.12851 6.23247 6.33400 6.55785 6.67255 6.78402 6.93981 7.05352 7.13999 7.22088 7.32058 7.42124 7.60496 7.79454 8.02885 8.92577 9.54924 10.64997 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.002854 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.862664 B = 9809.774722 C =10449.128152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.068 3.932 3 H 0.072 0.928 4 N -0.674 5.674 5 C 0.118 3.882 6 C -0.176 4.176 7 C -0.071 4.071 8 C -0.193 4.193 9 C 0.162 3.838 10 O -0.218 6.218 11 C -0.389 4.389 12 H 0.107 0.893 13 C 0.063 3.937 14 N -0.879 5.879 15 Si 0.906 3.094 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.260 1.260 19 C -0.222 4.222 20 C -0.050 4.050 21 C 0.088 3.912 22 H 0.083 0.917 23 C -0.120 4.120 24 C -0.135 4.135 25 C 0.044 3.956 26 N -0.680 5.680 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.344 0.656 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.279 0.721 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 8.031 -18.084 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.044 4.044 3 H 0.090 0.910 4 N -0.305 5.305 5 C -0.010 4.010 6 C -0.178 4.178 7 C -0.089 4.089 8 C -0.213 4.213 9 C 0.109 3.891 10 O -0.123 6.123 11 C -0.465 4.465 12 H 0.124 0.876 13 C -0.140 4.140 14 N -0.517 5.517 15 Si 0.731 3.269 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.241 4.241 20 C -0.069 4.069 21 C -0.022 4.022 22 H 0.101 0.899 23 C -0.159 4.159 24 C -0.173 4.173 25 C -0.085 4.085 26 N -0.311 5.311 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.162 0.838 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.251 7.330 -18.318 22.234 hybrid contribution -0.846 0.464 1.348 1.658 sum -11.097 7.793 -16.970 21.722 Atomic orbital electron populations 1.22514 0.97141 1.02561 1.01941 1.22107 0.92773 0.97813 0.91685 0.91005 1.60586 1.57191 1.09648 1.03094 1.20649 0.98389 0.93941 0.88007 1.19168 0.93675 1.06766 0.98147 1.20472 0.97910 0.96549 0.94007 1.20161 0.92965 1.07288 1.00856 1.19138 0.92541 0.90982 0.86421 1.83571 1.25891 1.65427 1.37363 1.20774 0.77728 1.32107 1.15887 0.87603 1.24471 0.95815 0.96299 0.97424 1.69649 1.10103 1.39488 1.32497 0.86178 0.81027 0.80189 0.79488 1.19865 1.20781 1.18392 1.21287 1.00795 1.04296 0.97759 1.20614 0.94266 0.96586 0.95415 1.22234 0.94558 0.98486 0.86947 0.89948 1.22631 0.94949 1.03209 0.95070 1.22759 0.97879 0.99828 0.96852 1.22832 0.90038 0.96811 0.98865 1.62175 1.17237 1.30259 1.21406 0.92059 0.92667 0.91971 0.83753 0.91317 0.95369 0.87365 0.86654 0.91039 0.85002 0.87294 0.91251 0.90452 0.90951 0.91116 0.90681 0.94235 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 8.99 37.16 0.33 -1.15 16 2 C 0.07 0.62 1.92 -67.71 -0.13 0.49 16 3 H 0.07 0.68 7.80 -51.93 -0.40 0.28 16 4 N -0.67 -7.57 5.87 -107.99 -0.63 -8.21 16 5 C 0.12 1.46 5.61 -4.97 -0.03 1.43 16 6 C -0.18 -2.79 5.40 -104.58 -0.56 -3.36 16 7 C -0.07 -1.15 9.69 -39.61 -0.38 -1.54 16 8 C -0.19 -3.77 9.99 -39.40 -0.39 -4.16 16 9 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 10 O -0.22 -5.73 8.59 0.03 0.00 -5.73 16 11 C -0.39 -10.97 9.95 30.89 0.31 -10.66 16 12 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 13 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 14 N -0.88 -25.42 13.96 55.48 0.77 -24.65 16 15 Si 0.91 21.66 28.62 -169.99 -4.86 16.79 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.22 -4.76 9.17 -39.39 -0.36 -5.12 16 20 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 21 C 0.09 0.83 3.24 -66.73 -0.22 0.62 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.12 -1.19 6.12 -24.91 -0.15 -1.35 16 24 C -0.14 -1.16 7.08 -24.60 -0.17 -1.33 16 25 C 0.04 0.35 7.57 -2.30 -0.02 0.34 16 26 N -0.68 -5.99 7.23 -103.82 -0.75 -6.74 16 27 H 0.06 0.52 8.13 -51.92 -0.42 0.09 16 28 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 29 H 0.06 0.45 6.69 -51.93 -0.35 0.10 16 30 H 0.34 3.93 8.46 -39.29 -0.33 3.60 16 31 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 32 H 0.03 0.32 7.38 -51.93 -0.38 -0.06 16 33 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.13 2.99 5.64 -52.48 -0.30 2.69 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.34 2.59 6.74 -39.29 -0.26 2.33 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -28.55 353.05 -9.56 -38.11 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.89 Total: 7.05 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.52 Total: -21.95 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: -0.61 Total: -39.60 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: 0.00 Total: -5.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.55 -9.56 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817920053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.048 kcal (2) G-P(sol) polarization free energy of solvation -28.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds