Wall clock time and date at job start Tue Mar 31 2020 08:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47157 * 2 1 4 4 N 1.46901 * 109.46949 * 119.99697 * 2 1 3 5 5 C 1.46907 * 111.00098 * 275.00169 * 4 2 1 6 6 C 1.50700 * 109.47297 * 180.02562 * 5 4 2 7 7 C 1.38299 * 119.92900 * 269.72740 * 6 5 4 8 8 C 1.38098 * 120.06920 * 179.72403 * 7 6 5 9 9 C 1.38878 * 119.92879 * 0.54835 * 8 7 6 10 10 O 1.35757 * 120.07146 * 179.74896 * 9 8 7 11 11 C 1.34828 * 116.99966 * 174.44573 * 10 9 8 12 12 H 1.07999 * 120.00466 * 5.04726 * 11 10 9 13 13 C 1.38655 * 119.99486 * 185.05619 * 11 10 9 14 14 N 1.31561 * 119.99401 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00373 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47218 * 89.99817 * 15 13 11 17 17 H 1.48495 * 109.47247 * 210.00187 * 15 13 11 18 18 H 1.48502 * 109.47011 * 330.00252 * 15 13 11 19 19 C 1.38879 * 119.86127 * 359.72370 * 9 8 7 20 20 C 1.38100 * 119.93368 * 0.02562 * 19 9 8 21 21 C 1.53001 * 109.47291 * 239.99566 * 2 1 3 22 22 H 1.08997 * 109.87967 * 300.42254 * 21 2 1 23 23 C 1.54321 * 109.88858 * 179.22492 * 21 2 1 24 24 C 1.55132 * 103.01652 * 218.31245 * 23 21 2 25 25 C 1.54906 * 101.65931 * 35.65013 * 24 23 21 26 26 N 1.47436 * 109.88830 * 61.45333 * 21 2 1 27 27 H 1.09009 * 109.46975 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47339 * 300.00086 * 1 2 3 29 29 H 1.08996 * 109.47276 * 60.00608 * 1 2 3 30 30 H 1.00899 * 111.00603 * 38.95351 * 4 2 1 31 31 H 1.08998 * 109.46912 * 300.00064 * 5 4 2 32 32 H 1.08999 * 109.46962 * 59.99991 * 5 4 2 33 33 H 1.08005 * 119.96479 * 0.02562 * 7 6 5 34 34 H 1.07997 * 120.03681 * 180.26914 * 8 7 6 35 35 H 0.96999 * 119.99628 * 179.97438 * 14 13 11 36 36 H 1.08007 * 120.03615 * 180.02562 * 19 9 8 37 37 H 1.07996 * 119.96855 * 180.02562 * 20 19 9 38 38 H 1.08997 * 110.70317 * 336.69323 * 23 21 2 39 39 H 1.08998 * 110.70416 * 99.92777 * 23 21 2 40 40 H 1.09001 * 110.99120 * 277.55837 * 24 23 21 41 41 H 1.09003 * 110.99263 * 153.74763 * 24 23 21 42 42 H 1.08999 * 110.37912 * 204.09990 * 25 24 23 43 43 H 1.09004 * 110.46698 * 81.80454 * 25 24 23 44 44 H 1.00908 * 110.99974 * 356.15235 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3470 6 6 2.5884 -0.5213 3.5559 7 6 1.6941 -1.1471 4.4052 8 6 2.1550 -1.8345 5.5107 9 6 3.5173 -1.8874 5.7754 10 8 3.9732 -2.5580 6.8641 11 6 5.3101 -2.6681 6.9998 12 1 5.9667 -2.1641 6.3060 13 6 5.8421 -3.4286 8.0299 14 7 7.1466 -3.5365 8.1619 15 14 4.7066 -4.3000 9.2302 16 1 4.3962 -5.6596 8.7199 17 1 5.3731 -4.4078 10.5528 18 1 3.4477 -3.5252 9.3720 19 6 4.4124 -1.2532 4.9237 20 6 3.9456 -0.5717 3.8169 21 6 2.0400 -0.7213 -1.2492 22 1 1.6743 -1.7480 -1.2596 23 6 3.5831 -0.7100 -1.2687 24 6 3.9119 -0.4959 -2.7696 25 6 2.7687 0.4528 -3.2084 26 7 1.5826 -0.0136 -2.4590 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.4496 -1.4979 1.4102 31 1 2.7588 1.0463 2.1183 32 1 1.0870 0.6164 2.5525 33 1 0.6345 -1.1022 4.2010 34 1 1.4565 -2.3266 6.1712 35 1 7.5188 -4.0682 8.8828 36 1 5.4725 -1.2929 5.1266 37 1 4.6411 -0.0787 3.1540 38 1 3.9700 0.1132 -0.6682 39 1 3.9799 -1.6631 -0.9193 40 1 3.8695 -1.4376 -3.3168 41 1 4.8842 -0.0185 -2.8921 42 1 2.5967 0.3691 -4.2814 43 1 3.0049 1.4831 -2.9419 44 1 0.9793 0.7591 -2.2195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817920053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:00 Heat of formation + Delta-G solvation = -24.104995 kcal Electronic energy + Delta-G solvation = -22513.818058 eV Core-core repulsion = 19237.335489 eV Total energy + Delta-G solvation = -3276.482570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92392 -40.12329 -38.66858 -36.74957 -34.48316 -32.87193 -31.80568 -31.13994 -29.84355 -28.66817 -27.43516 -25.38885 -23.69036 -23.18903 -21.97872 -21.80429 -21.08522 -19.80414 -19.09531 -17.57472 -16.90290 -16.70016 -16.49732 -15.84269 -15.78280 -15.61341 -15.40755 -15.07828 -14.54159 -14.38083 -14.26561 -14.10646 -14.05974 -13.90708 -13.46269 -13.15523 -12.99148 -12.93609 -12.67498 -12.41543 -12.38261 -12.19769 -12.05690 -11.94748 -11.88274 -11.60239 -11.47740 -11.27303 -10.90541 -9.79157 -9.43160 -9.24113 -8.93702 -8.50504 -6.23130 0.58454 0.63216 1.30910 1.35197 1.51544 2.27682 2.72231 2.98608 3.13713 3.24921 3.62512 3.83731 3.86849 3.92675 4.03688 4.07786 4.17782 4.27257 4.33400 4.38289 4.49673 4.59432 4.62510 4.68171 4.71549 4.82663 4.88395 4.93760 4.98876 5.02213 5.11869 5.13042 5.25956 5.26854 5.30428 5.39086 5.45829 5.57286 5.76564 5.83242 5.91560 5.96138 6.14557 6.27170 6.49274 6.52983 6.83909 7.58651 8.61351 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.002854 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.862664 B = 9809.774722 C =10449.128152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.075 0.925 4 N -0.683 5.683 5 C 0.124 3.876 6 C -0.148 4.148 7 C -0.060 4.060 8 C -0.192 4.192 9 C 0.119 3.881 10 O -0.246 6.246 11 C -0.399 4.399 12 H 0.079 0.921 13 C 0.009 3.991 14 N -0.925 5.925 15 Si 0.972 3.028 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.262 1.262 19 C -0.239 4.239 20 C -0.054 4.054 21 C 0.092 3.908 22 H 0.069 0.931 23 C -0.121 4.121 24 C -0.134 4.134 25 C 0.044 3.956 26 N -0.684 5.684 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.345 0.655 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.285 0.715 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.020 9.193 -19.861 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.035 4.035 3 H 0.093 0.907 4 N -0.315 5.315 5 C -0.005 4.005 6 C -0.149 4.149 7 C -0.079 4.079 8 C -0.211 4.211 9 C 0.070 3.930 10 O -0.153 6.153 11 C -0.475 4.475 12 H 0.097 0.903 13 C -0.189 4.189 14 N -0.566 5.566 15 Si 0.794 3.206 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.187 1.187 19 C -0.258 4.258 20 C -0.073 4.073 21 C -0.018 4.018 22 H 0.088 0.912 23 C -0.160 4.160 24 C -0.172 4.172 25 C -0.085 4.085 26 N -0.316 5.316 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.163 0.837 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.416 8.521 -20.140 25.656 hybrid contribution -0.010 0.289 1.555 1.581 sum -13.426 8.811 -18.586 24.563 Atomic orbital electron populations 1.22449 0.95864 1.02606 1.02663 1.22043 0.93646 0.97480 0.90365 0.90695 1.60490 1.58000 1.09729 1.03259 1.20621 0.99577 0.93609 0.86650 1.19660 0.92565 1.04088 0.98579 1.20949 1.00210 0.94531 0.92190 1.20506 0.91471 1.07230 1.01929 1.19698 0.94334 0.92189 0.86743 1.83512 1.24246 1.67943 1.39643 1.20701 0.78790 1.32253 1.15790 0.90316 1.25300 0.97319 0.97140 0.99181 1.69737 1.11665 1.41268 1.33901 0.85197 0.78771 0.78949 0.77670 1.19066 1.19184 1.18655 1.21275 0.99539 1.05690 0.99339 1.20859 0.96001 0.96049 0.94371 1.22113 0.94022 0.98059 0.87570 0.91247 1.22593 0.95447 1.02044 0.95914 1.22758 0.98666 1.00003 0.95778 1.22865 0.89413 0.97010 0.99183 1.62152 1.17653 1.30801 1.20954 0.92349 0.92287 0.90917 0.83663 0.90616 0.93085 0.82957 0.85427 0.90573 0.87791 0.85405 0.91898 0.92000 0.91307 0.90347 0.89974 0.93363 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 8.99 71.98 0.65 -1.56 16 2 C 0.08 1.15 1.92 44.92 0.09 1.23 16 3 H 0.07 1.14 7.80 -2.39 -0.02 1.12 16 4 N -0.68 -13.05 5.87 -495.56 -2.91 -15.96 16 5 C 0.12 2.52 5.61 85.56 0.48 3.00 16 6 C -0.15 -4.21 5.40 -19.83 -0.11 -4.32 16 7 C -0.06 -1.75 9.69 22.25 0.22 -1.53 16 8 C -0.19 -7.21 9.99 22.39 0.22 -6.98 16 9 C 0.12 5.61 6.65 22.58 0.15 5.76 16 10 O -0.25 -13.50 8.59 -22.79 -0.20 -13.69 16 11 C -0.40 -23.85 9.95 67.92 0.68 -23.18 16 12 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16 13 C 0.01 0.51 5.49 84.83 0.47 0.98 16 14 N -0.92 -55.93 13.96 21.61 0.30 -55.62 16 15 Si 0.97 45.82 28.62 68.60 1.96 47.78 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 20 C -0.05 -1.88 9.69 22.25 0.22 -1.67 16 21 C 0.09 1.56 3.24 45.26 0.15 1.70 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 C -0.12 -2.24 6.12 31.77 0.19 -2.05 16 24 C -0.13 -2.08 7.08 31.98 0.23 -1.85 16 25 C 0.04 0.61 7.57 86.77 0.66 1.26 16 26 N -0.68 -10.28 7.23 -482.37 -3.49 -13.77 16 27 H 0.06 0.78 8.13 -2.38 -0.02 0.76 16 28 H 0.06 0.71 7.45 -2.39 -0.02 0.70 16 29 H 0.07 0.77 6.69 -2.39 -0.02 0.76 16 30 H 0.34 6.64 8.46 -89.69 -0.76 5.88 16 31 H 0.08 1.52 8.00 -2.39 -0.02 1.50 16 32 H 0.05 0.87 7.38 -2.39 -0.02 0.86 16 33 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.10 5.15 5.64 -2.91 -0.02 5.13 16 37 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.06 1.24 7.85 -2.39 -0.02 1.22 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.34 4.21 6.74 -89.69 -0.60 3.61 16 Total: -1.00 -65.39 353.05 -0.21 -65.59 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.36 Total: 25.31 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 4.48 Total: -39.64 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -6.10 Total: -85.35 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.20 Total: -13.69 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.96 Total: 47.78 kcal Total: -65.39 -0.21 -65.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817920053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.490 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds