Wall clock time and date at job start Tue Mar 31 2020 08:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47451 * 2 1 4 4 N 1.46907 * 109.47383 * 239.99660 * 2 1 3 5 5 C 1.46906 * 110.99502 * 84.99949 * 4 2 1 6 6 C 1.50702 * 109.46860 * 180.02562 * 5 4 2 7 7 C 1.38297 * 119.93318 * 89.99970 * 6 5 4 8 8 C 1.38095 * 120.07013 * 179.97438 * 7 6 5 9 9 C 1.38878 * 119.92880 * 0.02562 * 8 7 6 10 10 O 1.35760 * 120.06868 * 179.97438 * 9 8 7 11 11 C 1.34831 * 116.99715 * 354.46842 * 10 9 8 12 12 H 1.07997 * 120.00242 * 5.05103 * 11 10 9 13 13 C 1.38656 * 119.99822 * 185.05388 * 11 10 9 14 14 N 1.31551 * 119.99935 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99966 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47105 * 60.00161 * 15 13 11 17 17 H 1.48497 * 109.46965 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47737 * 300.00333 * 15 13 11 19 19 C 1.38878 * 119.86540 * 359.97438 * 9 8 7 20 20 C 1.38096 * 119.92779 * 359.97438 * 19 9 8 21 21 C 1.53000 * 109.47476 * 120.00176 * 2 1 3 22 22 H 1.09002 * 109.90651 * 58.89135 * 21 2 1 23 23 C 1.53996 * 109.92362 * 179.97438 * 21 2 1 24 24 C 1.54598 * 105.13592 * 120.57436 * 23 21 2 25 25 C 1.54933 * 102.92397 * 21.96189 * 24 23 21 26 26 N 1.47900 * 109.91525 * 297.59233 * 21 2 1 27 27 H 1.08998 * 109.47024 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47018 * 299.99898 * 1 2 3 29 29 H 1.08998 * 109.47062 * 59.99846 * 1 2 3 30 30 H 1.00904 * 110.99897 * 321.05116 * 4 2 1 31 31 H 1.08992 * 109.47028 * 60.00542 * 5 4 2 32 32 H 1.09004 * 109.47194 * 300.00590 * 5 4 2 33 33 H 1.08000 * 119.96365 * 0.25322 * 7 6 5 34 34 H 1.07998 * 120.03481 * 179.97438 * 8 7 6 35 35 H 0.96999 * 120.00238 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.03376 * 179.97438 * 19 9 8 37 37 H 1.08002 * 119.96622 * 179.97438 * 20 19 9 38 38 H 1.08993 * 110.31243 * 239.49686 * 23 21 2 39 39 H 1.08998 * 110.30396 * 1.56302 * 23 21 2 40 40 H 1.09003 * 110.71860 * 140.31697 * 24 23 21 41 41 H 1.08994 * 110.72375 * 263.41839 * 24 23 21 42 42 H 1.09001 * 110.66818 * 81.01901 * 25 24 23 43 43 H 1.09003 * 110.66562 * 204.14567 * 25 24 23 44 44 H 1.00901 * 110.99968 * 335.82407 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5219 -3.5560 7 6 1.6928 -1.1519 -4.4019 8 6 2.1523 -1.8344 -5.5109 9 6 3.5145 -1.8881 -5.7762 10 8 3.9694 -2.5587 -6.8654 11 6 3.0597 -3.2463 -7.5849 12 1 2.0114 -3.1807 -7.3341 13 6 3.4703 -4.0376 -8.6469 14 7 4.7473 -4.1172 -8.9527 15 14 2.2101 -4.9908 -9.6432 16 1 1.2433 -4.0437 -10.2544 17 1 2.9001 -5.7531 -10.7146 18 1 1.4850 -5.9327 -8.7533 19 6 4.4104 -1.2545 -4.9249 20 6 3.9444 -0.5727 -3.8181 21 6 2.0400 -0.7213 1.2492 22 1 1.6645 -1.7444 1.2663 23 6 3.5800 -0.7279 1.2593 24 6 3.9782 0.0038 2.5617 25 6 2.7103 -0.1386 3.4407 26 7 1.6008 0.0011 2.4627 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.4495 -1.4980 -1.4100 31 1 2.7588 1.0461 -2.1182 32 1 1.0870 0.6163 -2.5525 33 1 0.6333 -1.1062 -4.1973 34 1 1.4533 -2.3265 -6.1708 35 1 5.0346 -4.6711 -9.6953 36 1 5.4703 -1.2949 -5.1284 37 1 4.6406 -0.0800 -3.1554 38 1 3.9539 -1.7516 1.2709 39 1 3.9662 -0.1945 0.3907 40 1 4.8311 -0.4847 3.0330 41 1 4.1975 1.0528 2.3632 42 1 2.6811 -1.1182 3.9179 43 1 2.6682 0.6552 4.1866 44 1 1.4185 0.9725 2.2592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817920055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:14 Heat of formation + Delta-G solvation = -6.850719 kcal Electronic energy + Delta-G solvation = -22468.823987 eV Core-core repulsion = 19193.089619 eV Total energy + Delta-G solvation = -3275.734368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.47144 -38.96389 -37.06155 -35.65867 -32.42375 -31.55244 -30.17569 -30.07410 -28.54133 -27.86754 -25.55504 -24.17127 -22.35826 -21.92727 -21.52348 -20.54317 -20.09155 -17.97188 -17.04842 -16.41385 -15.70954 -15.31527 -15.10092 -14.77374 -14.52024 -13.99838 -13.88349 -13.75735 -13.61988 -13.42389 -13.12863 -12.77628 -12.67870 -12.52188 -12.06118 -11.98622 -11.82095 -11.55017 -11.34528 -11.23693 -11.20029 -10.91660 -10.76463 -10.67767 -10.64809 -10.46116 -10.40501 -9.33541 -8.86998 -8.82792 -8.33907 -8.15936 -7.17774 -6.44967 -4.03943 2.23451 2.28851 3.12781 3.13838 3.16762 3.84798 3.96696 4.36173 4.57771 4.62095 4.72928 4.76140 4.91185 5.07388 5.10232 5.13065 5.29488 5.32784 5.37166 5.38841 5.43637 5.59637 5.61304 5.68944 5.74317 5.78729 5.82997 5.90927 5.96628 6.01338 6.04741 6.20739 6.22238 6.43583 6.58933 6.71540 6.90610 7.01088 7.07206 7.15841 7.27376 7.36000 7.44087 7.49736 7.83902 7.99977 9.00555 9.70956 10.73038 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.002708 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.238547 B =10338.439898 C =10667.899667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 H 0.072 0.928 4 N -0.676 5.676 5 C 0.120 3.880 6 C -0.185 4.185 7 C -0.065 4.065 8 C -0.235 4.235 9 C 0.156 3.844 10 O -0.178 6.178 11 C -0.392 4.392 12 H 0.091 0.909 13 C 0.039 3.961 14 N -0.863 5.863 15 Si 0.941 3.059 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.270 1.270 19 C -0.195 4.195 20 C -0.052 4.052 21 C 0.084 3.916 22 H 0.083 0.917 23 C -0.134 4.134 24 C -0.162 4.162 25 C 0.042 3.958 26 N -0.670 5.670 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.344 0.656 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.270 0.730 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 8.552 19.356 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.031 4.031 3 H 0.090 0.910 4 N -0.308 5.308 5 C -0.008 4.008 6 C -0.186 4.186 7 C -0.084 4.084 8 C -0.254 4.254 9 C 0.102 3.898 10 O -0.081 6.081 11 C -0.469 4.469 12 H 0.108 0.892 13 C -0.165 4.165 14 N -0.498 5.498 15 Si 0.765 3.235 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.195 1.195 19 C -0.214 4.214 20 C -0.071 4.071 21 C -0.026 4.026 22 H 0.101 0.899 23 C -0.173 4.173 24 C -0.201 4.201 25 C -0.088 4.088 26 N -0.298 5.298 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.285 7.965 19.502 21.719 hybrid contribution -0.901 0.144 -1.160 1.476 sum -6.186 8.109 18.343 20.988 Atomic orbital electron populations 1.22453 0.96919 1.02411 1.01972 1.21793 0.92920 0.97472 0.90931 0.90956 1.60600 1.57207 1.09754 1.03195 1.20625 0.98362 0.93845 0.87976 1.19104 0.93673 1.07372 0.98441 1.20581 0.97738 0.96006 0.94074 1.21113 0.95657 1.07496 1.01127 1.19403 0.91965 0.91183 0.87245 1.83982 1.36694 1.55528 1.31911 1.21273 0.89104 1.25196 1.11291 0.89156 1.25284 0.97168 0.96985 0.97057 1.70025 1.14255 1.37531 1.27971 0.85788 0.79299 0.79348 0.79039 1.19530 1.20267 1.19496 1.20222 0.98786 1.05437 0.96954 1.20446 0.94338 0.97004 0.95277 1.22314 0.93619 0.98583 0.88109 0.89927 1.22678 0.95992 1.01282 0.97383 1.23157 0.99158 1.00701 0.97081 1.23109 0.88464 1.02128 0.95090 1.62941 1.39726 1.17481 1.09650 0.92340 0.91629 0.92967 0.83745 0.91403 0.95431 0.87974 0.85683 0.91962 0.86615 0.87174 0.91467 0.90220 0.91197 0.91882 0.90331 0.91100 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.02 37.16 0.34 -1.28 16 2 C 0.08 0.77 1.81 -67.71 -0.12 0.64 16 3 H 0.07 0.70 7.77 -51.93 -0.40 0.29 16 4 N -0.68 -7.93 5.62 -107.98 -0.61 -8.53 16 5 C 0.12 1.55 5.61 -4.97 -0.03 1.52 16 6 C -0.18 -3.06 5.40 -104.58 -0.56 -3.62 16 7 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 8 C -0.23 -5.07 9.17 -39.40 -0.36 -5.43 16 9 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 10 O -0.18 -5.10 9.76 0.02 0.00 -5.10 16 11 C -0.39 -10.99 9.49 30.89 0.29 -10.70 16 12 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 13 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 14 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 15 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 C -0.19 -4.13 9.99 -39.40 -0.39 -4.53 16 20 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 21 C 0.08 0.81 3.14 -66.64 -0.21 0.60 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 C -0.13 -1.33 6.29 -25.37 -0.16 -1.48 16 24 C -0.16 -1.31 7.06 -24.87 -0.18 -1.49 16 25 C 0.04 0.32 7.55 -1.88 -0.01 0.31 16 26 N -0.67 -5.80 6.85 -103.11 -0.71 -6.51 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.06 0.55 7.49 -51.93 -0.39 0.16 16 29 H 0.05 0.48 7.45 -51.93 -0.39 0.10 16 30 H 0.34 4.20 8.46 -39.29 -0.33 3.87 16 31 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 32 H 0.03 0.34 7.38 -51.93 -0.38 -0.04 16 33 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.89 7.42 -51.93 -0.39 0.50 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.33 2.58 8.11 -39.29 -0.32 2.26 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -29.46 355.20 -9.69 -39.15 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.95 Total: 8.57 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.52 Total: -23.82 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -0.55 Total: -39.67 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.46 -9.69 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817920055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.300 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds