Wall clock time and date at job start Tue Mar 31 2020 08:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47451 * 2 1 4 4 N 1.46907 * 109.47383 * 239.99660 * 2 1 3 5 5 C 1.46906 * 110.99502 * 84.99949 * 4 2 1 6 6 C 1.50702 * 109.46860 * 180.02562 * 5 4 2 7 7 C 1.38297 * 119.93318 * 89.99970 * 6 5 4 8 8 C 1.38095 * 120.07013 * 179.97438 * 7 6 5 9 9 C 1.38878 * 119.92880 * 0.02562 * 8 7 6 10 10 O 1.35760 * 120.06868 * 179.97438 * 9 8 7 11 11 C 1.34831 * 116.99715 * 354.46842 * 10 9 8 12 12 H 1.07997 * 120.00242 * 5.05103 * 11 10 9 13 13 C 1.38656 * 119.99822 * 185.05388 * 11 10 9 14 14 N 1.31551 * 119.99935 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99966 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47105 * 60.00161 * 15 13 11 17 17 H 1.48497 * 109.46965 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47737 * 300.00333 * 15 13 11 19 19 C 1.38878 * 119.86540 * 359.97438 * 9 8 7 20 20 C 1.38096 * 119.92779 * 359.97438 * 19 9 8 21 21 C 1.53000 * 109.47476 * 120.00176 * 2 1 3 22 22 H 1.09002 * 109.90651 * 58.89135 * 21 2 1 23 23 C 1.53996 * 109.92362 * 179.97438 * 21 2 1 24 24 C 1.54598 * 105.13592 * 120.57436 * 23 21 2 25 25 C 1.54933 * 102.92397 * 21.96189 * 24 23 21 26 26 N 1.47900 * 109.91525 * 297.59233 * 21 2 1 27 27 H 1.08998 * 109.47024 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47018 * 299.99898 * 1 2 3 29 29 H 1.08998 * 109.47062 * 59.99846 * 1 2 3 30 30 H 1.00904 * 110.99897 * 321.05116 * 4 2 1 31 31 H 1.08992 * 109.47028 * 60.00542 * 5 4 2 32 32 H 1.09004 * 109.47194 * 300.00590 * 5 4 2 33 33 H 1.08000 * 119.96365 * 0.25322 * 7 6 5 34 34 H 1.07998 * 120.03481 * 179.97438 * 8 7 6 35 35 H 0.96999 * 120.00238 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.03376 * 179.97438 * 19 9 8 37 37 H 1.08002 * 119.96622 * 179.97438 * 20 19 9 38 38 H 1.08993 * 110.31243 * 239.49686 * 23 21 2 39 39 H 1.08998 * 110.30396 * 1.56302 * 23 21 2 40 40 H 1.09003 * 110.71860 * 140.31697 * 24 23 21 41 41 H 1.08994 * 110.72375 * 263.41839 * 24 23 21 42 42 H 1.09001 * 110.66818 * 81.01901 * 25 24 23 43 43 H 1.09003 * 110.66562 * 204.14567 * 25 24 23 44 44 H 1.00901 * 110.99968 * 335.82407 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5219 -3.5560 7 6 1.6928 -1.1519 -4.4019 8 6 2.1523 -1.8344 -5.5109 9 6 3.5145 -1.8881 -5.7762 10 8 3.9694 -2.5587 -6.8654 11 6 3.0597 -3.2463 -7.5849 12 1 2.0114 -3.1807 -7.3341 13 6 3.4703 -4.0376 -8.6469 14 7 4.7473 -4.1172 -8.9527 15 14 2.2101 -4.9908 -9.6432 16 1 1.2433 -4.0437 -10.2544 17 1 2.9001 -5.7531 -10.7146 18 1 1.4850 -5.9327 -8.7533 19 6 4.4104 -1.2545 -4.9249 20 6 3.9444 -0.5727 -3.8181 21 6 2.0400 -0.7213 1.2492 22 1 1.6645 -1.7444 1.2663 23 6 3.5800 -0.7279 1.2593 24 6 3.9782 0.0038 2.5617 25 6 2.7103 -0.1386 3.4407 26 7 1.6008 0.0011 2.4627 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.4495 -1.4980 -1.4100 31 1 2.7588 1.0461 -2.1182 32 1 1.0870 0.6163 -2.5525 33 1 0.6333 -1.1062 -4.1973 34 1 1.4533 -2.3265 -6.1708 35 1 5.0346 -4.6711 -9.6953 36 1 5.4703 -1.2949 -5.1284 37 1 4.6406 -0.0800 -3.1554 38 1 3.9539 -1.7516 1.2709 39 1 3.9662 -0.1945 0.3907 40 1 4.8311 -0.4847 3.0330 41 1 4.1975 1.0528 2.3632 42 1 2.6811 -1.1182 3.9179 43 1 2.6682 0.6552 4.1866 44 1 1.4185 0.9725 2.2592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817920055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:12 Heat of formation + Delta-G solvation = -26.735402 kcal Electronic energy + Delta-G solvation = -22469.686251 eV Core-core repulsion = 19193.089619 eV Total energy + Delta-G solvation = -3276.596633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.81361 -40.09996 -38.56994 -36.76442 -34.33505 -32.73749 -31.76524 -30.88251 -29.72750 -28.63278 -27.45037 -25.45398 -23.62037 -23.13564 -22.23662 -21.93134 -20.97312 -19.82556 -18.84763 -17.30924 -16.59341 -16.40925 -16.32498 -16.13255 -15.99345 -15.48773 -15.37718 -15.15993 -14.62072 -14.40823 -14.34822 -13.99918 -13.93658 -13.64872 -13.50500 -13.09232 -12.88902 -12.81528 -12.54664 -12.37092 -12.29444 -12.16339 -12.07352 -11.90571 -11.86349 -11.62147 -11.28630 -11.16829 -10.78576 -9.76246 -9.54543 -9.27536 -8.88014 -8.46875 -6.15157 0.62089 0.69325 1.34572 1.45355 1.50984 2.17936 2.77477 3.05009 3.25884 3.53981 3.67558 3.84542 3.92832 4.03193 4.06845 4.11187 4.23044 4.25662 4.38719 4.40623 4.51731 4.63392 4.67636 4.70818 4.75265 4.81072 4.90265 4.95074 5.02685 5.10766 5.14527 5.15776 5.21608 5.25619 5.32440 5.33566 5.44566 5.59003 5.72754 5.83067 5.88501 6.03350 6.14973 6.27161 6.47087 6.54089 6.97752 7.79348 8.76343 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.002708 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.238547 B =10338.439898 C =10667.899667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.087 3.913 3 H 0.080 0.920 4 N -0.683 5.683 5 C 0.126 3.874 6 C -0.156 4.156 7 C -0.062 4.062 8 C -0.243 4.243 9 C 0.113 3.887 10 O -0.234 6.234 11 C -0.414 4.414 12 H 0.101 0.899 13 C -0.024 4.024 14 N -0.922 5.922 15 Si 1.018 2.982 16 H -0.257 1.257 17 H -0.272 1.272 18 H -0.258 1.258 19 C -0.207 4.207 20 C -0.047 4.047 21 C 0.089 3.911 22 H 0.067 0.933 23 C -0.135 4.135 24 C -0.157 4.157 25 C 0.043 3.957 26 N -0.673 5.673 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.342 0.658 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.137 0.863 34 H 0.117 0.883 35 H 0.273 0.727 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 10.121 21.850 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 H 0.098 0.902 4 N -0.314 5.314 5 C -0.003 4.003 6 C -0.157 4.157 7 C -0.080 4.080 8 C -0.263 4.263 9 C 0.063 3.937 10 O -0.141 6.141 11 C -0.490 4.490 12 H 0.119 0.881 13 C -0.221 4.221 14 N -0.560 5.560 15 Si 0.838 3.162 16 H -0.181 1.181 17 H -0.196 1.196 18 H -0.182 1.182 19 C -0.226 4.226 20 C -0.065 4.065 21 C -0.021 4.021 22 H 0.085 0.915 23 C -0.174 4.174 24 C -0.196 4.196 25 C -0.087 4.087 26 N -0.302 5.302 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.160 0.840 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.505 9.578 22.059 25.193 hybrid contribution -0.248 -0.131 -1.574 1.599 sum -7.753 9.447 20.485 23.854 Atomic orbital electron populations 1.22387 0.96164 1.02186 1.02428 1.21749 0.93367 0.97451 0.89725 0.90171 1.60525 1.57830 1.09700 1.03360 1.20606 0.99468 0.93652 0.86550 1.19623 0.92914 1.04490 0.98670 1.20941 0.99872 0.94643 0.92562 1.21225 0.94464 1.08171 1.02399 1.19950 0.93837 0.92377 0.87541 1.83944 1.37887 1.57982 1.34251 1.21779 0.89760 1.25645 1.11830 0.88143 1.26597 0.99542 0.97870 0.98092 1.70178 1.16810 1.39613 1.29411 0.84653 0.76456 0.77880 0.77260 1.18108 1.19628 1.18187 1.20464 0.98469 1.05900 0.97813 1.20824 0.95762 0.95838 0.94119 1.22183 0.93283 0.98001 0.88671 0.91475 1.22647 0.96242 1.00598 0.97935 1.23123 0.99493 1.00803 0.96169 1.23138 0.87823 1.02596 0.95122 1.62903 1.40078 1.17987 1.09222 0.92916 0.90882 0.92780 0.83972 0.89939 0.93723 0.84472 0.86506 0.91846 0.87223 0.83980 0.92761 0.91289 0.90854 0.91251 0.90796 0.89378 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.02 71.98 0.65 -1.88 16 2 C 0.09 1.39 1.81 44.91 0.08 1.47 16 3 H 0.08 1.20 7.77 -2.39 -0.02 1.18 16 4 N -0.68 -13.69 5.62 -495.55 -2.79 -16.47 16 5 C 0.13 2.68 5.61 85.56 0.48 3.16 16 6 C -0.16 -4.68 5.40 -19.83 -0.11 -4.79 16 7 C -0.06 -2.06 9.69 22.25 0.22 -1.85 16 8 C -0.24 -10.58 9.17 22.39 0.21 -10.37 16 9 C 0.11 5.71 6.65 22.58 0.15 5.86 16 10 O -0.23 -14.30 9.76 -22.86 -0.22 -14.52 16 11 C -0.41 -24.39 9.49 67.92 0.64 -23.75 16 12 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 13 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 14 N -0.92 -57.25 13.67 21.61 0.30 -56.95 16 15 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 C -0.21 -8.96 9.99 22.39 0.22 -8.73 16 20 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 21 C 0.09 1.50 3.14 45.06 0.14 1.65 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 C -0.13 -2.41 6.29 31.47 0.20 -2.21 16 24 C -0.16 -2.17 7.06 31.80 0.22 -1.94 16 25 C 0.04 0.55 7.55 86.64 0.65 1.20 16 26 N -0.67 -9.81 6.85 -480.12 -3.29 -13.09 16 27 H 0.05 0.84 8.13 -2.39 -0.02 0.83 16 28 H 0.07 0.98 7.49 -2.39 -0.02 0.96 16 29 H 0.05 0.78 7.45 -2.39 -0.02 0.77 16 30 H 0.34 7.27 8.46 -89.69 -0.76 6.51 16 31 H 0.08 1.62 8.00 -2.39 -0.02 1.60 16 32 H 0.04 0.86 7.38 -2.39 -0.02 0.84 16 33 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.38 7.42 -2.39 -0.02 1.36 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.34 4.12 8.11 -89.69 -0.73 3.40 16 Total: -1.00 -68.63 355.20 -0.01 -68.64 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.48 Total: 31.66 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 4.44 Total: -44.44 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -5.78 Total: -86.52 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.22 Total: -14.52 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -68.63 -0.01 -68.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817920055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.907 kcal (2) G-P(sol) polarization free energy of solvation -68.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds