Wall clock time and date at job start Tue Mar 31 2020 07:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46892 * 2 1 4 4 N 1.46904 * 109.47418 * 240.00088 * 2 1 3 5 5 C 1.46904 * 110.99804 * 84.99427 * 4 2 1 6 6 H 1.08996 * 109.50381 * 325.00359 * 5 4 2 7 7 C 1.53120 * 109.50363 * 204.92259 * 5 4 2 8 8 C 1.53123 * 109.15808 * 182.44825 * 7 5 4 9 9 C 1.53038 * 109.30997 * 57.59418 * 8 7 5 10 10 N 1.46839 * 109.52580 * 300.84187 * 9 8 7 11 11 C 1.46853 * 111.19904 * 61.74432 * 10 9 8 12 12 C 1.50696 * 109.47298 * 120.00064 * 2 1 3 13 13 C 1.38303 * 119.93100 * 79.72840 * 12 2 1 14 14 C 1.38102 * 120.06900 * 179.73005 * 13 12 2 15 15 C 1.38875 * 119.92683 * 0.56467 * 14 13 12 16 16 O 1.35751 * 120.06681 * 179.68561 * 15 14 13 17 17 C 1.34838 * 117.00271 * 174.48614 * 16 15 14 18 18 H 1.07997 * 119.99492 * 5.06469 * 17 16 15 19 19 C 1.38644 * 120.00029 * 185.05768 * 17 16 15 20 20 N 1.31556 * 120.00568 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46848 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47192 * 120.00176 * 21 19 17 24 24 H 1.48503 * 109.46924 * 239.99940 * 21 19 17 25 25 C 1.38877 * 119.86491 * 359.70718 * 15 14 13 26 26 C 1.38097 * 119.92958 * 359.97438 * 25 15 14 27 27 H 1.08996 * 109.47175 * 60.00206 * 1 2 3 28 28 H 1.09007 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47431 * 299.99517 * 1 2 3 30 30 H 1.00903 * 110.99798 * 321.05062 * 4 2 1 31 31 H 1.09006 * 109.52040 * 302.31291 * 7 5 4 32 32 H 1.08996 * 109.52315 * 62.50123 * 7 5 4 33 33 H 1.08997 * 109.46900 * 297.65702 * 8 7 5 34 34 H 1.09001 * 109.53235 * 177.57812 * 8 7 5 35 35 H 1.09002 * 109.45801 * 180.81962 * 9 8 7 36 36 H 1.09001 * 109.45098 * 60.85460 * 9 8 7 37 37 H 1.00897 * 111.00241 * 297.64682 * 10 9 8 38 38 H 1.08992 * 109.46162 * 178.24435 * 11 10 9 39 39 H 1.08997 * 109.45435 * 58.26152 * 11 10 9 40 40 H 1.07998 * 119.96505 * 359.97438 * 13 12 2 41 41 H 1.07995 * 120.03502 * 180.27456 * 14 13 12 42 42 H 0.96993 * 120.00020 * 179.97438 * 20 19 17 43 43 H 1.08006 * 120.03519 * 180.02562 * 25 15 14 44 44 H 1.08006 * 119.96383 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2578 0.9332 -2.2912 7 6 1.9790 -0.5797 -3.6470 8 6 2.1065 0.3744 -4.8378 9 6 3.4354 1.1275 -4.7428 10 7 3.4842 1.8797 -3.4827 11 6 3.4121 0.9801 -2.3242 12 6 2.0324 -0.7104 1.2304 13 6 2.0609 -2.0927 1.2658 14 6 2.5260 -2.7466 2.3898 15 6 2.9542 -2.0147 3.4897 16 8 3.4059 -2.6547 4.5984 17 6 3.9125 -1.8872 5.5846 18 1 3.8709 -0.8109 5.5066 19 6 4.4868 -2.4799 6.6986 20 7 4.5379 -3.7911 6.7935 21 14 5.1881 -1.4166 8.0651 22 1 5.0083 0.0162 7.7191 23 1 4.4789 -1.7124 9.3359 24 1 6.6352 -1.7086 8.2263 25 6 2.9190 -0.6269 3.4531 26 6 2.4591 0.0212 2.3237 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.4496 -1.4979 -1.4101 31 1 2.7806 -1.3174 -3.6844 32 1 1.0146 -1.0861 -3.6867 33 1 1.2822 1.0874 -4.8220 34 1 2.0768 -0.1958 -5.7664 35 1 3.5221 1.8181 -5.5817 36 1 4.2595 0.4147 -4.7725 37 1 2.7530 2.5740 -3.4474 38 1 3.4819 1.5638 -1.4063 39 1 4.2364 0.2682 -2.3655 40 1 1.7229 -2.6613 0.4121 41 1 2.5522 -3.8259 2.4152 42 1 4.9401 -4.2056 7.5727 43 1 3.2518 -0.0550 4.3068 44 1 2.4319 1.1005 2.2945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817939718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:23 Heat of formation + Delta-G solvation = -10.205379 kcal Electronic energy + Delta-G solvation = -22785.815237 eV Core-core repulsion = 19509.935400 eV Total energy + Delta-G solvation = -3275.879837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.60170 -38.87564 -37.16973 -35.26425 -32.37142 -31.96471 -31.20299 -30.13776 -28.11264 -27.60088 -25.37255 -23.98090 -23.07544 -22.16299 -21.60828 -20.49651 -19.89144 -17.88645 -16.93992 -16.41797 -15.62959 -15.48773 -15.07148 -14.80905 -14.48117 -14.40437 -14.00175 -13.56937 -13.53394 -13.19757 -12.92751 -12.71384 -12.67432 -12.52694 -12.39969 -12.21860 -11.70572 -11.62420 -11.52648 -11.45416 -11.16161 -11.07311 -10.76655 -10.65436 -10.48494 -10.39276 -10.33558 -9.27709 -8.80102 -8.75767 -8.26949 -8.10062 -7.09768 -6.41151 -3.99849 2.28763 2.38242 3.14407 3.16198 3.21578 3.91175 3.99937 4.23412 4.50915 4.60384 4.64229 4.77338 4.94263 5.06824 5.11742 5.13509 5.21521 5.30943 5.32006 5.37430 5.41206 5.56240 5.62803 5.68666 5.72998 5.76471 5.79961 5.83829 5.94659 5.98769 6.09961 6.15315 6.28167 6.46973 6.71829 6.76786 6.93389 7.07983 7.12735 7.14276 7.35229 7.39906 7.47619 7.50693 7.89044 8.04397 9.04946 9.76331 10.77264 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002903 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.112876 B = 9643.257733 C = 9907.841238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.141 3.859 3 H 0.075 0.925 4 N -0.671 5.671 5 C 0.054 3.946 6 H 0.039 0.961 7 C -0.122 4.122 8 C -0.154 4.154 9 C 0.055 3.945 10 N -0.685 5.685 11 C 0.067 3.933 12 C -0.166 4.166 13 C -0.053 4.053 14 C -0.194 4.194 15 C 0.153 3.847 16 O -0.181 6.181 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.233 4.233 26 C -0.068 4.068 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.339 0.661 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.337 0.663 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.269 0.731 43 H 0.125 0.875 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 9.163 -19.514 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.032 3.968 3 H 0.093 0.907 4 N -0.302 5.302 5 C -0.058 4.058 6 H 0.057 0.943 7 C -0.160 4.160 8 C -0.194 4.194 9 C -0.075 4.075 10 N -0.312 5.312 11 C -0.063 4.063 12 C -0.167 4.167 13 C -0.072 4.072 14 C -0.214 4.214 15 C 0.100 3.900 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.252 4.252 26 C -0.087 4.087 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.904 8.877 -19.106 21.631 hybrid contribution -1.641 0.319 0.511 1.748 sum -6.545 9.196 -18.595 21.752 Atomic orbital electron populations 1.22495 0.97405 1.02103 1.01417 1.20225 0.91648 0.96713 0.88215 0.90701 1.60625 1.57803 1.09033 1.02765 1.22274 0.98315 0.94902 0.90290 0.94290 1.21755 1.02265 0.98307 0.93706 1.22260 0.99265 0.99292 0.98606 1.22042 0.96277 0.96948 0.92214 1.60734 1.52493 1.15907 1.02112 1.22061 0.96335 0.94972 0.92914 1.19040 1.09155 0.93515 0.94994 1.20293 0.97652 0.93388 0.95845 1.20203 1.08849 0.99301 0.93001 1.19382 0.92121 0.90914 0.87588 1.83981 1.67579 1.35056 1.21824 1.21360 1.37878 0.90704 0.96690 0.89089 1.25275 0.96816 0.96298 0.98187 1.70047 1.41923 1.08712 1.29297 0.85663 0.78706 0.79286 0.79857 1.19120 1.20205 1.20164 1.21106 1.09654 0.94410 1.00022 1.20534 0.97303 0.98046 0.92800 0.93638 0.92385 0.91829 0.84217 0.90768 0.92193 0.92233 0.91330 0.90894 0.90723 0.84638 0.90676 0.90027 0.87470 0.86761 0.92145 0.85696 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 9.12 37.16 0.34 -1.65 16 2 C 0.14 1.81 2.60 -68.86 -0.18 1.64 16 3 H 0.07 0.96 6.98 -51.93 -0.36 0.59 16 4 N -0.67 -7.79 5.52 -100.86 -0.56 -8.34 16 5 C 0.05 0.52 2.45 -67.63 -0.17 0.36 16 6 H 0.04 0.38 7.12 -51.93 -0.37 0.01 16 7 C -0.12 -1.03 5.27 -26.61 -0.14 -1.17 16 8 C -0.15 -1.09 6.08 -26.65 -0.16 -1.25 16 9 C 0.06 0.42 6.55 -3.84 -0.03 0.40 16 10 N -0.68 -6.25 6.87 -113.82 -0.78 -7.04 16 11 C 0.07 0.71 6.04 -3.83 -0.02 0.69 16 12 C -0.17 -2.77 4.96 -104.58 -0.52 -3.29 16 13 C -0.05 -0.95 9.31 -39.61 -0.37 -1.32 16 14 C -0.19 -4.16 9.99 -39.40 -0.39 -4.55 16 15 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 16 O -0.18 -5.24 9.76 0.02 0.00 -5.24 16 17 C -0.39 -11.04 9.49 30.88 0.29 -10.75 16 18 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.67 13.67 55.48 0.76 -24.92 16 21 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 25 C -0.23 -5.11 9.17 -39.40 -0.36 -5.47 16 26 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 27 H 0.04 0.45 7.43 -51.93 -0.39 0.06 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.34 3.69 7.45 -39.29 -0.29 3.40 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.34 2.68 8.86 -39.29 -0.35 2.33 16 38 H 0.07 0.87 7.44 -51.93 -0.39 0.48 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 1.62 7.25 -52.49 -0.38 1.24 16 41 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.13 2.76 5.64 -52.48 -0.30 2.47 16 44 H 0.10 1.62 8.03 -52.48 -0.42 1.20 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -30.26 350.56 -9.64 -39.90 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.88 Total: 8.13 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.44 Total: -23.54 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.58 Total: -40.29 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.26 -9.64 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817939718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.697 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds