Wall clock time and date at job start Tue Mar 31 2020 07:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46892 * 2 1 4 4 N 1.46904 * 109.47418 * 240.00088 * 2 1 3 5 5 C 1.46904 * 110.99804 * 84.99427 * 4 2 1 6 6 H 1.08996 * 109.50381 * 325.00359 * 5 4 2 7 7 C 1.53120 * 109.50363 * 204.92259 * 5 4 2 8 8 C 1.53123 * 109.15808 * 182.44825 * 7 5 4 9 9 C 1.53038 * 109.30997 * 57.59418 * 8 7 5 10 10 N 1.46839 * 109.52580 * 300.84187 * 9 8 7 11 11 C 1.46853 * 111.19904 * 61.74432 * 10 9 8 12 12 C 1.50696 * 109.47298 * 120.00064 * 2 1 3 13 13 C 1.38303 * 119.93100 * 79.72840 * 12 2 1 14 14 C 1.38102 * 120.06900 * 179.73005 * 13 12 2 15 15 C 1.38875 * 119.92683 * 0.56467 * 14 13 12 16 16 O 1.35751 * 120.06681 * 179.68561 * 15 14 13 17 17 C 1.34838 * 117.00271 * 174.48614 * 16 15 14 18 18 H 1.07997 * 119.99492 * 5.06469 * 17 16 15 19 19 C 1.38644 * 120.00029 * 185.05768 * 17 16 15 20 20 N 1.31556 * 120.00568 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46848 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47192 * 120.00176 * 21 19 17 24 24 H 1.48503 * 109.46924 * 239.99940 * 21 19 17 25 25 C 1.38877 * 119.86491 * 359.70718 * 15 14 13 26 26 C 1.38097 * 119.92958 * 359.97438 * 25 15 14 27 27 H 1.08996 * 109.47175 * 60.00206 * 1 2 3 28 28 H 1.09007 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47431 * 299.99517 * 1 2 3 30 30 H 1.00903 * 110.99798 * 321.05062 * 4 2 1 31 31 H 1.09006 * 109.52040 * 302.31291 * 7 5 4 32 32 H 1.08996 * 109.52315 * 62.50123 * 7 5 4 33 33 H 1.08997 * 109.46900 * 297.65702 * 8 7 5 34 34 H 1.09001 * 109.53235 * 177.57812 * 8 7 5 35 35 H 1.09002 * 109.45801 * 180.81962 * 9 8 7 36 36 H 1.09001 * 109.45098 * 60.85460 * 9 8 7 37 37 H 1.00897 * 111.00241 * 297.64682 * 10 9 8 38 38 H 1.08992 * 109.46162 * 178.24435 * 11 10 9 39 39 H 1.08997 * 109.45435 * 58.26152 * 11 10 9 40 40 H 1.07998 * 119.96505 * 359.97438 * 13 12 2 41 41 H 1.07995 * 120.03502 * 180.27456 * 14 13 12 42 42 H 0.96993 * 120.00020 * 179.97438 * 20 19 17 43 43 H 1.08006 * 120.03519 * 180.02562 * 25 15 14 44 44 H 1.08006 * 119.96383 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2578 0.9332 -2.2912 7 6 1.9790 -0.5797 -3.6470 8 6 2.1065 0.3744 -4.8378 9 6 3.4354 1.1275 -4.7428 10 7 3.4842 1.8797 -3.4827 11 6 3.4121 0.9801 -2.3242 12 6 2.0324 -0.7104 1.2304 13 6 2.0609 -2.0927 1.2658 14 6 2.5260 -2.7466 2.3898 15 6 2.9542 -2.0147 3.4897 16 8 3.4059 -2.6547 4.5984 17 6 3.9125 -1.8872 5.5846 18 1 3.8709 -0.8109 5.5066 19 6 4.4868 -2.4799 6.6986 20 7 4.5379 -3.7911 6.7935 21 14 5.1881 -1.4166 8.0651 22 1 5.0083 0.0162 7.7191 23 1 4.4789 -1.7124 9.3359 24 1 6.6352 -1.7086 8.2263 25 6 2.9190 -0.6269 3.4531 26 6 2.4591 0.0212 2.3237 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.4496 -1.4979 -1.4101 31 1 2.7806 -1.3174 -3.6844 32 1 1.0146 -1.0861 -3.6867 33 1 1.2822 1.0874 -4.8220 34 1 2.0768 -0.1958 -5.7664 35 1 3.5221 1.8181 -5.5817 36 1 4.2595 0.4147 -4.7725 37 1 2.7530 2.5740 -3.4474 38 1 3.4819 1.5638 -1.4063 39 1 4.2364 0.2682 -2.3655 40 1 1.7229 -2.6613 0.4121 41 1 2.5522 -3.8259 2.4152 42 1 4.9401 -4.2056 7.5727 43 1 3.2518 -0.0550 4.3068 44 1 2.4319 1.1005 2.2945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817939718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:22 Heat of formation + Delta-G solvation = -31.167859 kcal Electronic energy + Delta-G solvation = -22786.724238 eV Core-core repulsion = 19509.935400 eV Total energy + Delta-G solvation = -3276.788838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89853 -40.10374 -38.63812 -36.50170 -34.27569 -32.89506 -32.09176 -31.75182 -29.53570 -28.49569 -27.35059 -24.76604 -24.15615 -23.65632 -22.72971 -21.39740 -21.14589 -19.72881 -18.79986 -17.28810 -16.71209 -16.48444 -16.24839 -16.12287 -15.70940 -15.51233 -15.46833 -15.30671 -14.89403 -14.41729 -14.25178 -13.99208 -13.68766 -13.54810 -13.48028 -13.33535 -13.11228 -12.93719 -12.64913 -12.48928 -12.28480 -12.20322 -12.13332 -12.09134 -11.76159 -11.64604 -11.30779 -11.12264 -10.77662 -9.73256 -9.54855 -9.09952 -8.82754 -8.45966 -6.13819 0.64707 0.75634 1.34910 1.43541 1.53419 2.18447 2.82539 3.07021 3.23823 3.53076 3.55799 3.81093 3.91008 4.02999 4.10341 4.13696 4.21499 4.28950 4.35743 4.38834 4.41530 4.57578 4.62905 4.64663 4.73198 4.87564 4.88447 4.97972 5.01420 5.08819 5.12039 5.13027 5.18705 5.22223 5.26425 5.31442 5.36623 5.63132 5.75065 5.80219 6.02336 6.05499 6.24999 6.31921 6.48618 6.55583 6.99156 7.81680 8.77905 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002903 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.112876 B = 9643.257733 C = 9907.841238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.146 3.854 3 H 0.084 0.916 4 N -0.682 5.682 5 C 0.062 3.938 6 H 0.049 0.951 7 C -0.120 4.120 8 C -0.147 4.147 9 C 0.054 3.946 10 N -0.692 5.692 11 C 0.072 3.928 12 C -0.139 4.139 13 C -0.046 4.046 14 C -0.206 4.206 15 C 0.110 3.890 16 O -0.236 6.236 17 C -0.411 4.411 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.923 5.923 21 Si 1.019 2.981 22 H -0.251 1.251 23 H -0.268 1.268 24 H -0.269 1.269 25 C -0.242 4.242 26 C -0.069 4.069 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.345 0.655 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.345 0.655 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.141 0.859 41 H 0.109 0.891 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 11.650 -22.081 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.037 3.963 3 H 0.102 0.898 4 N -0.314 5.314 5 C -0.050 4.050 6 H 0.067 0.933 7 C -0.158 4.158 8 C -0.187 4.187 9 C -0.076 4.076 10 N -0.321 5.321 11 C -0.059 4.059 12 C -0.140 4.140 13 C -0.064 4.064 14 C -0.226 4.226 15 C 0.060 3.940 16 O -0.143 6.143 17 C -0.487 4.487 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.562 5.562 21 Si 0.838 3.162 22 H -0.175 1.175 23 H -0.193 1.193 24 H -0.194 1.194 25 C -0.261 4.261 26 C -0.088 4.088 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.164 0.836 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.159 0.841 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.226 11.392 -21.739 25.320 hybrid contribution -1.359 -0.362 0.935 1.688 sum -7.584 11.030 -20.804 24.738 Atomic orbital electron populations 1.22419 0.95545 1.02486 1.02404 1.20168 0.92858 0.96476 0.86823 0.89825 1.60506 1.58107 1.09707 1.03098 1.22226 0.97946 0.94725 0.90076 0.93310 1.21731 1.02343 0.98222 0.93468 1.22202 0.98909 0.99140 0.98458 1.22080 0.96455 0.97084 0.91931 1.60691 1.53161 1.16050 1.02158 1.21922 0.96167 0.94661 0.93149 1.19623 1.05225 0.93266 0.95919 1.20650 0.96200 0.94241 0.95338 1.20461 1.09211 0.99383 0.93523 1.19919 0.93899 0.92458 0.87736 1.83941 1.70297 1.36519 1.23535 1.21845 1.38277 0.91344 0.97272 0.88236 1.26587 0.96967 0.97828 1.00801 1.70192 1.44293 1.10986 1.30698 0.84532 0.77888 0.77803 0.75984 1.17479 1.19264 1.19382 1.21201 1.10185 0.93487 1.01202 1.20909 0.96165 0.99887 0.91791 0.91376 0.92351 0.92211 0.83472 0.91897 0.91246 0.91394 0.90203 0.89515 0.91773 0.83645 0.91788 0.92135 0.84137 0.87307 0.91900 0.86630 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.12 71.98 0.66 -2.46 16 2 C 0.15 3.21 2.60 44.17 0.11 3.32 16 3 H 0.08 1.78 6.98 -2.39 -0.02 1.76 16 4 N -0.68 -13.50 5.52 -473.02 -2.61 -16.11 16 5 C 0.06 0.99 2.45 44.97 0.11 1.10 16 6 H 0.05 0.73 7.12 -2.39 -0.02 0.72 16 7 C -0.12 -1.62 5.27 30.68 0.16 -1.46 16 8 C -0.15 -1.59 6.08 30.65 0.19 -1.40 16 9 C 0.05 0.70 6.55 86.33 0.57 1.26 16 10 N -0.69 -10.98 6.87 -514.01 -3.53 -14.51 16 11 C 0.07 1.36 6.04 86.33 0.52 1.88 16 12 C -0.14 -4.30 4.96 -19.84 -0.10 -4.40 16 13 C -0.05 -1.56 9.31 22.25 0.21 -1.36 16 14 C -0.21 -9.06 9.99 22.39 0.22 -8.83 16 15 C 0.11 5.62 6.65 22.58 0.15 5.77 16 16 O -0.24 -14.60 9.76 -22.84 -0.22 -14.82 16 17 C -0.41 -24.54 9.49 67.92 0.64 -23.90 16 18 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 19 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 20 N -0.92 -57.83 13.67 21.61 0.30 -57.53 16 21 Si 1.02 43.78 29.55 68.60 2.03 45.81 16 22 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 25 C -0.24 -10.79 9.17 22.39 0.21 -10.58 16 26 C -0.07 -2.42 9.66 22.25 0.21 -2.20 16 27 H 0.07 1.00 7.43 -2.39 -0.02 0.98 16 28 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.35 6.18 7.45 -89.69 -0.67 5.51 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.35 4.46 8.86 -89.70 -0.79 3.67 16 38 H 0.06 1.34 7.44 -2.39 -0.02 1.32 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.14 3.83 7.25 -2.91 -0.02 3.81 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 44 H 0.14 3.86 8.03 -2.91 -0.02 3.84 16 Total: -1.00 -70.76 350.56 -0.17 -70.93 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.46 Total: 30.47 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 4.33 Total: -44.23 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -5.84 Total: -88.16 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.22 Total: -14.82 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -70.76 -0.17 -70.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817939718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.760 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds