Wall clock time and date at job start Tue Mar 31 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46810 * 2 1 4 4 N 1.46897 * 109.46976 * 119.99774 * 2 1 3 5 5 C 1.46904 * 110.99918 * 275.00140 * 4 2 1 6 6 H 1.08998 * 109.50128 * 34.92387 * 5 4 2 7 7 C 1.53118 * 109.50456 * 154.99952 * 5 4 2 8 8 C 1.53110 * 109.16262 * 177.59248 * 7 5 4 9 9 C 1.53041 * 109.27972 * 302.34698 * 8 7 5 10 10 N 1.46849 * 109.51984 * 59.18389 * 9 8 7 11 11 C 1.46846 * 111.19428 * 298.25122 * 10 9 8 12 12 C 1.50697 * 109.47074 * 239.99895 * 2 1 3 13 13 C 1.38299 * 119.93191 * 100.00009 * 12 2 1 14 14 C 1.38101 * 120.07156 * 179.97438 * 13 12 2 15 15 C 1.38875 * 119.92866 * 0.02562 * 14 13 12 16 16 O 1.35745 * 120.06994 * 179.97438 * 15 14 13 17 17 C 1.34830 * 117.00330 * 5.53698 * 16 15 14 18 18 H 1.08001 * 119.99393 * 354.93648 * 17 16 15 19 19 C 1.38649 * 120.00607 * 174.94429 * 17 16 15 20 20 N 1.31556 * 120.00297 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99985 * 0.27210 * 19 17 16 22 22 H 1.48508 * 109.47147 * 269.72968 * 21 19 17 23 23 H 1.48503 * 109.47193 * 29.72229 * 21 19 17 24 24 H 1.48499 * 109.47626 * 149.72994 * 21 19 17 25 25 C 1.38883 * 119.86317 * 0.25339 * 15 14 13 26 26 C 1.38105 * 119.92883 * 359.48870 * 25 15 14 27 27 H 1.08997 * 109.47235 * 60.00341 * 1 2 3 28 28 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47197 * 300.00457 * 1 2 3 30 30 H 1.00900 * 111.00338 * 38.95196 * 4 2 1 31 31 H 1.08995 * 109.52581 * 297.50838 * 7 5 4 32 32 H 1.09010 * 109.52142 * 57.68817 * 7 5 4 33 33 H 1.09000 * 109.50508 * 62.28955 * 8 7 5 34 34 H 1.09005 * 109.50763 * 182.40600 * 8 7 5 35 35 H 1.09003 * 109.45932 * 179.19189 * 9 8 7 36 36 H 1.08995 * 109.46298 * 299.16175 * 9 8 7 37 37 H 1.00889 * 111.00673 * 62.35030 * 10 9 8 38 38 H 1.09007 * 109.46386 * 301.73482 * 11 10 9 39 39 H 1.08998 * 109.46393 * 181.76160 * 11 10 9 40 40 H 1.08007 * 119.96452 * 359.97438 * 13 12 2 41 41 H 1.07993 * 120.03648 * 179.97438 * 14 13 12 42 42 H 0.97002 * 120.00179 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.03652 * 179.73313 * 25 15 14 44 44 H 1.07993 * 119.96628 * 180.27831 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2227 2.3469 6 1 1.2585 0.9341 2.2904 7 6 1.9769 -0.5794 3.6469 8 6 2.1035 0.3746 4.8377 9 6 3.4337 1.1256 4.7445 10 7 3.4853 1.8777 3.4843 11 6 3.4132 0.9781 2.3258 12 6 2.0324 -0.7104 -1.2304 13 6 2.4586 0.0211 -2.3240 14 6 2.9200 -0.6269 -3.4528 15 6 2.9551 -2.0148 -3.4894 16 8 3.4076 -2.6547 -4.5977 17 6 3.9150 -1.8874 -5.5834 18 1 3.8734 -0.8110 -5.5054 19 6 4.4902 -2.4800 -6.6971 20 7 4.9857 -1.7313 -7.6586 21 14 4.5552 -4.3417 -6.8356 22 1 5.8185 -4.8391 -6.2338 23 1 3.3982 -4.9324 -6.1160 24 1 4.5007 -4.7339 -8.2668 25 6 2.5210 -2.7467 -2.3918 26 6 2.0657 -2.0926 -1.2639 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.4496 -1.4978 1.4101 31 1 1.0120 -1.0847 3.6859 32 1 2.7777 -1.3180 3.6852 33 1 1.2804 1.0890 4.8209 34 1 2.0719 -0.1958 5.7661 35 1 3.5204 1.8162 5.5833 36 1 4.2567 0.4116 4.7754 37 1 2.7553 2.5731 3.4480 38 1 4.2364 0.2648 2.3681 39 1 3.4851 1.5615 1.4079 40 1 2.4306 1.1005 -2.2951 41 1 3.2523 -0.0551 -4.3066 42 1 5.3884 -2.1459 -8.4376 43 1 2.5431 -3.8261 -2.4188 44 1 1.7322 -2.6611 -0.4084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817939720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:30 Heat of formation + Delta-G solvation = -8.369600 kcal Electronic energy + Delta-G solvation = -22815.398488 eV Core-core repulsion = 19539.598256 eV Total energy + Delta-G solvation = -3275.800232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.66544 -39.00821 -37.31660 -35.36028 -32.43288 -32.05371 -31.28288 -30.23459 -28.31609 -27.66197 -25.31704 -23.99773 -23.06902 -22.19422 -21.70252 -20.52982 -19.87653 -17.79673 -17.25691 -16.45051 -15.69589 -15.54139 -15.14936 -14.88177 -14.53405 -14.40445 -13.79090 -13.76835 -13.63849 -13.29415 -12.95027 -12.78365 -12.64789 -12.48554 -12.41142 -12.25322 -12.16406 -11.70763 -11.55622 -11.52801 -11.14513 -11.08631 -10.79793 -10.68328 -10.55895 -10.43447 -10.11631 -9.34892 -8.83997 -8.79132 -8.31471 -8.19196 -7.24768 -6.38745 -4.05190 2.18513 2.26825 3.23833 3.27680 3.42283 3.87422 4.20376 4.26195 4.47298 4.53392 4.60650 4.74350 4.88523 4.92937 5.03772 5.08049 5.14804 5.18880 5.26734 5.29838 5.35532 5.53705 5.59987 5.62583 5.69031 5.71793 5.73455 5.79581 5.91109 5.91623 6.06343 6.11180 6.18809 6.38203 6.60714 6.69196 6.82692 6.99087 7.11968 7.15700 7.32467 7.35105 7.38816 7.65758 7.83708 8.07472 8.96920 9.60282 10.69123 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.002936 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.124645 B = 9533.525866 C = 9623.442236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.140 3.860 3 H 0.076 0.924 4 N -0.672 5.672 5 C 0.054 3.946 6 H 0.040 0.960 7 C -0.122 4.122 8 C -0.154 4.154 9 C 0.055 3.945 10 N -0.684 5.684 11 C 0.067 3.933 12 C -0.158 4.158 13 C -0.069 4.069 14 C -0.220 4.220 15 C 0.159 3.841 16 O -0.220 6.220 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.260 1.260 24 H -0.283 1.283 25 C -0.194 4.194 26 C -0.056 4.056 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.339 0.661 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.337 0.663 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.114 0.886 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 4.274 22.356 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.030 3.970 3 H 0.095 0.905 4 N -0.303 5.303 5 C -0.058 4.058 6 H 0.058 0.942 7 C -0.160 4.160 8 C -0.194 4.194 9 C -0.075 4.075 10 N -0.312 5.312 11 C -0.063 4.063 12 C -0.159 4.159 13 C -0.088 4.088 14 C -0.239 4.239 15 C 0.107 3.893 16 O -0.125 6.125 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.184 1.184 24 H -0.208 1.208 25 C -0.213 4.213 26 C -0.074 4.074 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.154 0.846 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.332 4.163 21.894 23.168 hybrid contribution -1.848 -0.827 -0.074 2.026 sum -8.181 3.336 21.820 23.541 Atomic orbital electron populations 1.22493 0.97277 1.02116 1.01546 1.20249 0.91748 0.96823 0.88157 0.90535 1.60615 1.57771 1.09066 1.02800 1.22279 0.98381 0.94895 0.90234 0.94224 1.21753 1.02239 0.98311 0.93723 1.22261 0.99288 0.99294 0.98590 1.22046 0.96237 0.96972 0.92232 1.60727 1.52597 1.15819 1.02087 1.22062 0.96264 0.95000 0.92968 1.19112 1.08268 0.93529 0.94983 1.20594 0.97172 0.98334 0.92705 1.21221 1.08199 0.94333 1.00126 1.19123 0.92543 0.90946 0.86704 1.83570 1.69331 1.36395 1.23194 1.20761 1.37229 0.92093 0.96322 0.87677 1.24458 0.95105 1.00176 0.94297 1.69647 1.37608 1.36118 1.08599 0.86183 0.79695 0.83774 0.77253 1.19899 1.18394 1.20845 1.20198 1.08941 0.99198 0.92986 1.20295 0.97863 0.93431 0.95820 0.91756 0.92390 0.93540 0.84227 0.92209 0.90780 0.92202 0.91324 0.90875 0.90725 0.84603 0.90031 0.90643 0.87551 0.85069 0.91107 0.86764 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.12 37.16 0.34 -1.56 16 2 C 0.14 1.72 2.60 -68.87 -0.18 1.54 16 3 H 0.08 0.95 6.99 -51.93 -0.36 0.58 16 4 N -0.67 -7.43 5.51 -100.87 -0.56 -7.98 16 5 C 0.05 0.50 2.45 -67.63 -0.17 0.34 16 6 H 0.04 0.38 7.12 -51.93 -0.37 0.01 16 7 C -0.12 -0.98 5.27 -26.61 -0.14 -1.12 16 8 C -0.15 -1.05 6.08 -26.65 -0.16 -1.21 16 9 C 0.05 0.41 6.55 -3.83 -0.03 0.39 16 10 N -0.68 -6.12 6.87 -113.81 -0.78 -6.90 16 11 C 0.07 0.69 6.04 -3.83 -0.02 0.67 16 12 C -0.16 -2.53 4.96 -104.58 -0.52 -3.05 16 13 C -0.07 -1.24 9.66 -39.61 -0.38 -1.63 16 14 C -0.22 -4.75 9.17 -39.40 -0.36 -5.11 16 15 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 16 O -0.22 -5.86 8.59 0.06 0.00 -5.86 16 17 C -0.39 -11.06 9.95 30.88 0.31 -10.75 16 18 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.71 13.96 55.48 0.77 -24.93 16 21 Si 0.91 21.90 28.62 -169.99 -4.86 17.04 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.19 -3.86 9.99 -39.39 -0.39 -4.26 16 26 C -0.06 -0.93 9.32 -39.61 -0.37 -1.30 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.05 0.44 7.43 -51.93 -0.39 0.05 16 30 H 0.34 3.48 7.44 -39.29 -0.29 3.19 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.34 2.62 8.86 -39.30 -0.35 2.27 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.85 7.45 -51.93 -0.39 0.47 16 40 H 0.11 1.65 8.03 -52.48 -0.42 1.23 16 41 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 42 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.11 1.54 7.24 -52.49 -0.38 1.16 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -29.21 349.43 -9.48 -38.69 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.89 Total: 6.64 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -2.43 Total: -21.95 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.56 Total: -39.82 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: 0.00 Total: -5.86 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.21 -9.48 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817939720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.320 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds