Wall clock time and date at job start Tue Mar 31 2020 07:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46810 * 2 1 4 4 N 1.46897 * 109.46976 * 119.99774 * 2 1 3 5 5 C 1.46904 * 110.99918 * 275.00140 * 4 2 1 6 6 H 1.08998 * 109.50128 * 34.92387 * 5 4 2 7 7 C 1.53118 * 109.50456 * 154.99952 * 5 4 2 8 8 C 1.53110 * 109.16262 * 177.59248 * 7 5 4 9 9 C 1.53041 * 109.27972 * 302.34698 * 8 7 5 10 10 N 1.46849 * 109.51984 * 59.18389 * 9 8 7 11 11 C 1.46846 * 111.19428 * 298.25122 * 10 9 8 12 12 C 1.50697 * 109.47074 * 239.99895 * 2 1 3 13 13 C 1.38299 * 119.93191 * 100.00009 * 12 2 1 14 14 C 1.38101 * 120.07156 * 179.97438 * 13 12 2 15 15 C 1.38875 * 119.92866 * 0.02562 * 14 13 12 16 16 O 1.35745 * 120.06994 * 179.97438 * 15 14 13 17 17 C 1.34830 * 117.00330 * 5.53698 * 16 15 14 18 18 H 1.08001 * 119.99393 * 354.93648 * 17 16 15 19 19 C 1.38649 * 120.00607 * 174.94429 * 17 16 15 20 20 N 1.31556 * 120.00297 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99985 * 0.27210 * 19 17 16 22 22 H 1.48508 * 109.47147 * 269.72968 * 21 19 17 23 23 H 1.48503 * 109.47193 * 29.72229 * 21 19 17 24 24 H 1.48499 * 109.47626 * 149.72994 * 21 19 17 25 25 C 1.38883 * 119.86317 * 0.25339 * 15 14 13 26 26 C 1.38105 * 119.92883 * 359.48870 * 25 15 14 27 27 H 1.08997 * 109.47235 * 60.00341 * 1 2 3 28 28 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47197 * 300.00457 * 1 2 3 30 30 H 1.00900 * 111.00338 * 38.95196 * 4 2 1 31 31 H 1.08995 * 109.52581 * 297.50838 * 7 5 4 32 32 H 1.09010 * 109.52142 * 57.68817 * 7 5 4 33 33 H 1.09000 * 109.50508 * 62.28955 * 8 7 5 34 34 H 1.09005 * 109.50763 * 182.40600 * 8 7 5 35 35 H 1.09003 * 109.45932 * 179.19189 * 9 8 7 36 36 H 1.08995 * 109.46298 * 299.16175 * 9 8 7 37 37 H 1.00889 * 111.00673 * 62.35030 * 10 9 8 38 38 H 1.09007 * 109.46386 * 301.73482 * 11 10 9 39 39 H 1.08998 * 109.46393 * 181.76160 * 11 10 9 40 40 H 1.08007 * 119.96452 * 359.97438 * 13 12 2 41 41 H 1.07993 * 120.03648 * 179.97438 * 14 13 12 42 42 H 0.97002 * 120.00179 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.03652 * 179.73313 * 25 15 14 44 44 H 1.07993 * 119.96628 * 180.27831 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2227 2.3469 6 1 1.2585 0.9341 2.2904 7 6 1.9769 -0.5794 3.6469 8 6 2.1035 0.3746 4.8377 9 6 3.4337 1.1256 4.7445 10 7 3.4853 1.8777 3.4843 11 6 3.4132 0.9781 2.3258 12 6 2.0324 -0.7104 -1.2304 13 6 2.4586 0.0211 -2.3240 14 6 2.9200 -0.6269 -3.4528 15 6 2.9551 -2.0148 -3.4894 16 8 3.4076 -2.6547 -4.5977 17 6 3.9150 -1.8874 -5.5834 18 1 3.8734 -0.8110 -5.5054 19 6 4.4902 -2.4800 -6.6971 20 7 4.9857 -1.7313 -7.6586 21 14 4.5552 -4.3417 -6.8356 22 1 5.8185 -4.8391 -6.2338 23 1 3.3982 -4.9324 -6.1160 24 1 4.5007 -4.7339 -8.2668 25 6 2.5210 -2.7467 -2.3918 26 6 2.0657 -2.0926 -1.2639 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.4496 -1.4978 1.4101 31 1 1.0120 -1.0847 3.6859 32 1 2.7777 -1.3180 3.6852 33 1 1.2804 1.0890 4.8209 34 1 2.0719 -0.1958 5.7661 35 1 3.5204 1.8162 5.5833 36 1 4.2567 0.4116 4.7754 37 1 2.7553 2.5731 3.4480 38 1 4.2364 0.2648 2.3681 39 1 3.4851 1.5615 1.4079 40 1 2.4306 1.1005 -2.2951 41 1 3.2523 -0.0551 -4.3066 42 1 5.3884 -2.1459 -8.4376 43 1 2.5431 -3.8261 -2.4188 44 1 1.7322 -2.6611 -0.4084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817939720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:29 Heat of formation + Delta-G solvation = -28.130921 kcal Electronic energy + Delta-G solvation = -22816.255403 eV Core-core repulsion = 19539.598256 eV Total energy + Delta-G solvation = -3276.657147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99128 -40.14669 -38.73336 -36.53679 -34.44199 -32.93927 -32.12277 -31.78478 -29.70882 -28.50720 -27.24952 -24.75285 -24.11515 -23.71005 -22.73653 -21.37422 -21.13036 -19.69327 -19.08000 -17.30091 -16.81864 -16.58749 -16.26316 -15.95674 -15.71301 -15.63694 -15.48933 -15.27418 -14.96987 -14.40450 -14.29181 -14.09211 -13.89373 -13.68851 -13.55715 -13.35696 -13.11863 -12.98238 -12.68076 -12.50829 -12.37201 -12.20512 -12.15191 -12.02404 -11.74387 -11.64673 -11.33769 -11.21025 -10.88334 -9.76268 -9.55778 -9.11271 -8.90553 -8.49318 -6.21538 0.61133 0.69765 1.31090 1.35630 1.52041 2.28595 2.76514 3.01609 3.13383 3.22601 3.52542 3.80799 3.89313 4.02250 4.08843 4.12683 4.18285 4.28516 4.34881 4.37655 4.40684 4.57549 4.61510 4.64501 4.71103 4.87114 4.88069 4.98347 5.00455 5.02171 5.09560 5.11796 5.21562 5.24342 5.27740 5.35304 5.44095 5.60003 5.76657 5.82529 5.93599 6.01611 6.24986 6.31063 6.48453 6.55684 6.85369 7.61201 8.62598 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.002936 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.124645 B = 9533.525866 C = 9623.442236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.081 0.919 4 N -0.680 5.680 5 C 0.062 3.938 6 H 0.048 0.952 7 C -0.119 4.119 8 C -0.148 4.148 9 C 0.054 3.946 10 N -0.693 5.693 11 C 0.071 3.929 12 C -0.131 4.131 13 C -0.074 4.074 14 C -0.236 4.236 15 C 0.116 3.884 16 O -0.247 6.247 17 C -0.398 4.398 18 H 0.079 0.921 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.972 3.028 22 H -0.266 1.266 23 H -0.263 1.263 24 H -0.267 1.267 25 C -0.193 4.193 26 C -0.048 4.048 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.347 0.653 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.345 0.655 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.284 0.716 43 H 0.125 0.875 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 3.763 25.902 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 H 0.099 0.901 4 N -0.312 5.312 5 C -0.050 4.050 6 H 0.066 0.934 7 C -0.157 4.157 8 C -0.187 4.187 9 C -0.076 4.076 10 N -0.322 5.322 11 C -0.059 4.059 12 C -0.132 4.132 13 C -0.092 4.092 14 C -0.255 4.255 15 C 0.067 3.933 16 O -0.155 6.155 17 C -0.475 4.475 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.567 5.567 21 Si 0.794 3.206 22 H -0.191 1.191 23 H -0.187 1.187 24 H -0.192 1.192 25 C -0.212 4.212 26 C -0.067 4.067 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.163 0.837 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.143 0.857 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.124 3.671 25.491 27.005 hybrid contribution -1.401 -0.485 -0.828 1.698 sum -9.525 3.186 24.662 26.629 Atomic orbital electron populations 1.22417 0.95392 1.02675 1.02361 1.20179 0.92972 0.96455 0.86929 0.90125 1.60492 1.58066 1.09713 1.02975 1.22220 0.97851 0.94751 0.90158 0.93396 1.21725 1.02447 0.98192 0.93320 1.22204 0.98831 0.99163 0.98549 1.22084 0.96509 0.97100 0.91866 1.60684 1.53262 1.16013 1.02207 1.21923 0.96262 0.94686 0.93070 1.19657 1.04413 0.93602 0.95559 1.20883 0.96533 0.99825 0.91962 1.21222 1.09387 0.94068 1.00852 1.19665 0.94460 0.92008 0.87174 1.83508 1.71596 1.36340 1.24095 1.20701 1.37828 0.91417 0.97508 0.90320 1.25286 0.94872 1.04938 0.93870 1.69733 1.39411 1.38016 1.09510 0.85204 0.79574 0.77943 0.77894 1.19119 1.18705 1.19153 1.20523 1.08096 0.99943 0.92675 1.20722 0.96282 0.93967 0.95683 0.92372 0.91975 0.91409 0.83289 0.91127 0.91742 0.91461 0.90148 0.89602 0.91700 0.83688 0.92012 0.91997 0.85083 0.87716 0.90609 0.85663 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.12 71.98 0.66 -2.31 16 2 C 0.14 3.04 2.60 44.17 0.11 3.16 16 3 H 0.08 1.71 6.99 -2.39 -0.02 1.70 16 4 N -0.68 -12.56 5.51 -473.04 -2.61 -15.17 16 5 C 0.06 0.95 2.45 44.97 0.11 1.06 16 6 H 0.05 0.70 7.12 -2.39 -0.02 0.68 16 7 C -0.12 -1.49 5.27 30.67 0.16 -1.33 16 8 C -0.15 -1.50 6.08 30.64 0.19 -1.32 16 9 C 0.05 0.68 6.55 86.33 0.57 1.24 16 10 N -0.69 -10.93 6.87 -513.99 -3.53 -14.46 16 11 C 0.07 1.33 6.04 86.33 0.52 1.85 16 12 C -0.13 -3.88 4.96 -19.84 -0.10 -3.98 16 13 C -0.07 -2.59 9.66 22.25 0.21 -2.37 16 14 C -0.24 -10.65 9.17 22.39 0.21 -10.44 16 15 C 0.12 5.54 6.65 22.58 0.15 5.69 16 16 O -0.25 -13.80 8.59 -22.68 -0.19 -13.99 16 17 C -0.40 -24.05 9.95 67.92 0.68 -23.37 16 18 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 19 C 0.01 0.49 5.49 84.83 0.47 0.96 16 20 N -0.93 -56.37 13.96 21.61 0.30 -56.07 16 21 Si 0.97 46.36 28.62 68.60 1.96 48.32 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.19 -7.52 9.99 22.39 0.22 -7.30 16 26 C -0.05 -1.49 9.32 22.25 0.21 -1.28 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 29 H 0.07 0.95 7.43 -2.39 -0.02 0.93 16 30 H 0.35 5.55 7.44 -89.69 -0.67 4.88 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.35 4.48 8.86 -89.70 -0.79 3.69 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.06 1.30 7.45 -2.39 -0.02 1.29 16 40 H 0.13 3.90 8.03 -2.91 -0.02 3.88 16 41 H 0.10 5.22 5.64 -2.91 -0.02 5.21 16 42 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 43 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 44 H 0.15 3.46 7.24 -2.91 -0.02 3.43 16 Total: -1.00 -66.94 349.43 -0.16 -67.10 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.46 Total: 24.02 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.36 Total: -39.75 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -5.83 Total: -85.70 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.19 Total: -13.99 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.96 Total: 48.32 kcal Total: -66.94 -0.16 -67.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817939720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.972 kcal (2) G-P(sol) polarization free energy of solvation -66.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds