Wall clock time and date at job start Tue Mar 31 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47334 * 2 1 4 4 N 1.46899 * 109.47469 * 120.00245 * 2 1 3 5 5 C 1.46894 * 111.00126 * 209.30626 * 4 2 1 6 6 H 1.09000 * 109.50055 * 329.38758 * 5 4 2 7 7 C 1.53126 * 109.50297 * 209.31396 * 5 4 2 8 8 C 1.53112 * 109.16335 * 182.40097 * 7 5 4 9 9 C 1.53038 * 109.27869 * 57.65332 * 8 7 5 10 10 N 1.46850 * 109.52465 * 300.82297 * 9 8 7 11 11 C 1.46846 * 111.19812 * 61.73592 * 10 9 8 12 12 C 1.50707 * 109.46842 * 239.99925 * 2 1 3 13 13 C 1.38301 * 119.92827 * 279.72409 * 12 2 1 14 14 C 1.38103 * 120.06515 * 179.72536 * 13 12 2 15 15 C 1.38880 * 119.93085 * 0.57506 * 14 13 12 16 16 O 1.35748 * 120.07031 * 179.67853 * 15 14 13 17 17 C 1.34835 * 117.00084 * 185.82810 * 16 15 14 18 18 H 1.08004 * 119.99893 * 354.92640 * 17 16 15 19 19 C 1.38654 * 120.00161 * 174.91562 * 17 16 15 20 20 N 1.31561 * 119.99495 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00099 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46829 * 60.00781 * 21 19 17 23 23 H 1.48498 * 109.46930 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47401 * 300.00636 * 21 19 17 25 25 C 1.38885 * 119.86396 * 359.70160 * 15 14 13 26 26 C 1.38103 * 119.92451 * 0.02562 * 25 15 14 27 27 H 1.09000 * 109.47498 * 175.04550 * 1 2 3 28 28 H 1.09001 * 109.46880 * 295.04803 * 1 2 3 29 29 H 1.09002 * 109.46994 * 55.04496 * 1 2 3 30 30 H 1.00907 * 110.99532 * 333.25394 * 4 2 1 31 31 H 1.08997 * 109.52172 * 302.31043 * 7 5 4 32 32 H 1.09005 * 109.52281 * 62.42973 * 7 5 4 33 33 H 1.09000 * 109.50712 * 177.59532 * 8 7 5 34 34 H 1.09008 * 109.50587 * 297.71527 * 8 7 5 35 35 H 1.08999 * 109.46193 * 60.83622 * 9 8 7 36 36 H 1.08995 * 109.46618 * 180.81907 * 9 8 7 37 37 H 1.00901 * 110.99922 * 297.64519 * 10 9 8 38 38 H 1.09002 * 109.46447 * 178.24086 * 11 10 9 39 39 H 1.09009 * 109.45947 * 58.28006 * 11 10 9 40 40 H 1.07997 * 119.96770 * 359.97438 * 13 12 2 41 41 H 1.08000 * 120.03792 * 180.27255 * 14 13 12 42 42 H 0.97007 * 119.99622 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.03855 * 180.02562 * 25 15 14 44 44 H 1.08000 * 119.96219 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3227 -0.1600 1.6196 6 1 3.8722 0.1890 0.7454 7 6 4.1231 -1.2614 2.3203 8 6 5.4542 -0.6827 2.8078 9 6 5.1798 0.4973 3.7429 10 7 4.4125 1.5237 3.0258 11 6 3.1101 1.0047 2.5891 12 6 2.0323 -0.7105 -1.2305 13 6 2.0714 -2.0926 -1.2617 14 6 2.5258 -2.7466 -2.3899 15 6 2.9550 -2.0148 -3.4895 16 8 3.4083 -2.6548 -4.5975 17 6 3.9217 -1.8877 -5.5804 18 1 3.8838 -0.8113 -5.5009 19 6 4.4984 -2.4808 -6.6931 20 7 4.5442 -3.7921 -6.7900 21 14 5.2103 -1.4182 -8.0545 22 1 6.2925 -0.5647 -7.5015 23 1 5.7627 -2.2880 -9.1237 24 1 4.1412 -0.5570 -8.6206 25 6 2.9198 -0.6269 -3.4530 26 6 2.4590 0.0211 -2.3238 27 1 -0.3634 -1.0238 -0.0888 28 1 -0.3633 0.4351 0.9310 29 1 -0.3633 0.5888 -0.8423 30 1 1.3471 -0.6361 1.9494 31 1 3.5562 -1.6383 3.1715 32 1 4.3132 -2.0751 1.6203 33 1 6.0102 -1.4510 3.3450 34 1 6.0376 -0.3412 1.9527 35 1 4.6083 0.1525 4.6046 36 1 6.1257 0.9209 4.0804 37 1 4.9372 1.8874 2.2445 38 1 2.5528 1.7967 2.0888 39 1 2.5482 0.6576 3.4563 40 1 1.7424 -2.6610 -0.4043 41 1 2.5520 -3.8260 -2.4154 42 1 4.9474 -4.2070 -7.5686 43 1 3.2525 -0.0551 -4.3066 44 1 2.4318 1.1004 -2.2946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817939721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:33 Heat of formation + Delta-G solvation = -10.370361 kcal Electronic energy + Delta-G solvation = -23090.433463 eV Core-core repulsion = 19814.546472 eV Total energy + Delta-G solvation = -3275.886991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.58112 -38.82925 -37.10992 -35.16262 -32.33782 -31.89356 -31.31349 -30.10105 -28.19324 -27.47132 -25.36748 -23.75421 -22.80546 -22.24751 -21.76901 -20.48936 -19.83227 -17.88651 -16.88981 -16.26424 -15.80304 -15.23893 -15.16964 -14.80717 -14.49854 -14.23906 -13.89289 -13.63693 -13.52814 -13.34100 -12.98061 -12.70981 -12.52002 -12.36549 -12.25453 -11.98843 -11.65912 -11.55331 -11.38471 -11.37165 -11.15365 -10.90220 -10.80895 -10.61695 -10.48800 -10.42775 -10.36560 -9.29291 -9.09364 -8.78884 -8.09796 -8.00483 -7.10155 -6.41827 -4.00782 2.29742 2.40071 3.14036 3.15108 3.17888 3.93035 3.99009 4.26186 4.59411 4.64137 4.81921 4.85076 4.97629 5.11279 5.15435 5.17262 5.32560 5.37470 5.38202 5.41938 5.45907 5.64561 5.67681 5.71156 5.77970 5.84819 5.88533 5.95630 5.98770 6.16560 6.17174 6.26298 6.31541 6.48292 6.69478 6.81595 6.93367 7.07068 7.10623 7.14126 7.31200 7.46688 7.50489 7.56929 7.91538 8.03497 9.03901 9.75730 10.76408 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.003478 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.928430 B = 8048.872312 C = 8558.144708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.141 3.859 3 H 0.042 0.958 4 N -0.673 5.673 5 C 0.057 3.943 6 H 0.078 0.922 7 C -0.106 4.106 8 C -0.159 4.159 9 C 0.056 3.944 10 N -0.685 5.685 11 C 0.031 3.969 12 C -0.174 4.174 13 C -0.041 4.041 14 C -0.200 4.200 15 C 0.154 3.846 16 O -0.180 6.180 17 C -0.392 4.392 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.236 4.236 26 C -0.072 4.072 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.336 0.664 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.341 0.659 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.270 0.730 43 H 0.124 0.876 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 8.707 17.725 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.060 0.940 4 N -0.304 5.304 5 C -0.055 4.055 6 H 0.096 0.904 7 C -0.144 4.144 8 C -0.199 4.199 9 C -0.073 4.073 10 N -0.313 5.313 11 C -0.100 4.100 12 C -0.175 4.175 13 C -0.059 4.059 14 C -0.219 4.219 15 C 0.101 3.899 16 O -0.084 6.084 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.256 4.256 26 C -0.091 4.091 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.142 0.858 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.527 8.062 17.713 19.624 hybrid contribution 0.432 0.811 -1.195 1.507 sum -2.096 8.873 16.517 18.866 Atomic orbital electron populations 1.22002 0.94826 1.02792 1.01094 1.20177 0.93790 0.94170 0.88632 0.93987 1.60469 1.03972 1.58766 1.07199 1.22321 0.91710 0.94003 0.97464 0.90418 1.21515 0.94616 0.98176 1.00069 1.22299 0.98081 0.99341 1.00155 1.22034 0.98001 0.90729 0.96584 1.60644 1.05144 1.34804 1.30744 1.22788 0.92156 0.96782 0.98287 1.19138 1.09489 0.93799 0.95111 1.20425 0.96297 0.93489 0.95715 1.20277 1.09323 0.99317 0.92998 1.19413 0.92011 0.90908 0.87575 1.83979 1.67365 1.35048 1.22018 1.21260 1.37820 0.90632 0.97094 0.89253 1.25269 0.96820 0.96289 0.98136 1.70036 1.41824 1.08692 1.29417 0.85804 0.79276 0.78931 0.79546 1.19561 1.20283 1.19544 1.21078 1.10078 0.94419 0.99991 1.20568 0.97515 0.97929 0.93049 0.91684 0.93331 0.91938 0.84580 0.92138 0.90977 0.91340 0.91884 0.91082 0.90885 0.84130 0.91162 0.91015 0.86482 0.86837 0.92040 0.85834 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.17 37.16 0.34 -1.32 16 2 C 0.14 1.80 2.63 -68.86 -0.18 1.62 16 3 H 0.04 0.53 7.32 -51.93 -0.38 0.15 16 4 N -0.67 -7.63 5.32 -100.87 -0.54 -8.17 16 5 C 0.06 0.62 2.41 -67.64 -0.16 0.45 16 6 H 0.08 1.03 7.72 -51.93 -0.40 0.63 16 7 C -0.11 -1.13 5.61 -26.61 -0.15 -1.28 16 8 C -0.16 -1.47 6.08 -26.65 -0.16 -1.63 16 9 C 0.06 0.48 6.55 -3.83 -0.03 0.45 16 10 N -0.68 -6.37 6.87 -113.82 -0.78 -7.15 16 11 C 0.03 0.29 5.81 -3.84 -0.02 0.27 16 12 C -0.17 -2.92 4.86 -104.57 -0.51 -3.43 16 13 C -0.04 -0.74 9.32 -39.61 -0.37 -1.11 16 14 C -0.20 -4.34 9.99 -39.39 -0.39 -4.73 16 15 C 0.15 3.80 6.65 -39.10 -0.26 3.54 16 16 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 17 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 18 H 0.09 2.35 5.21 -52.48 -0.27 2.07 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 21 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 C -0.24 -5.21 9.17 -39.39 -0.36 -5.57 16 26 C -0.07 -1.32 9.66 -39.61 -0.38 -1.70 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.43 8.03 -51.93 -0.42 0.02 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.34 3.22 7.88 -39.29 -0.31 2.91 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.34 3.07 8.86 -39.29 -0.35 2.72 16 38 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 39 H 0.07 0.65 8.11 -51.92 -0.42 0.23 16 40 H 0.12 1.93 7.70 -52.49 -0.40 1.53 16 41 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.12 2.74 5.64 -52.49 -0.30 2.44 16 44 H 0.10 1.59 8.03 -52.49 -0.42 1.17 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -30.22 353.23 -9.72 -39.94 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.02 Total: 8.81 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -2.44 Total: -24.29 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: -0.56 Total: -40.25 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.22 -9.72 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817939721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.565 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds