Wall clock time and date at job start Tue Mar 31 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47334 * 2 1 4 4 N 1.46899 * 109.47469 * 120.00245 * 2 1 3 5 5 C 1.46894 * 111.00126 * 209.30626 * 4 2 1 6 6 H 1.09000 * 109.50055 * 329.38758 * 5 4 2 7 7 C 1.53126 * 109.50297 * 209.31396 * 5 4 2 8 8 C 1.53112 * 109.16335 * 182.40097 * 7 5 4 9 9 C 1.53038 * 109.27869 * 57.65332 * 8 7 5 10 10 N 1.46850 * 109.52465 * 300.82297 * 9 8 7 11 11 C 1.46846 * 111.19812 * 61.73592 * 10 9 8 12 12 C 1.50707 * 109.46842 * 239.99925 * 2 1 3 13 13 C 1.38301 * 119.92827 * 279.72409 * 12 2 1 14 14 C 1.38103 * 120.06515 * 179.72536 * 13 12 2 15 15 C 1.38880 * 119.93085 * 0.57506 * 14 13 12 16 16 O 1.35748 * 120.07031 * 179.67853 * 15 14 13 17 17 C 1.34835 * 117.00084 * 185.82810 * 16 15 14 18 18 H 1.08004 * 119.99893 * 354.92640 * 17 16 15 19 19 C 1.38654 * 120.00161 * 174.91562 * 17 16 15 20 20 N 1.31561 * 119.99495 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00099 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46829 * 60.00781 * 21 19 17 23 23 H 1.48498 * 109.46930 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47401 * 300.00636 * 21 19 17 25 25 C 1.38885 * 119.86396 * 359.70160 * 15 14 13 26 26 C 1.38103 * 119.92451 * 0.02562 * 25 15 14 27 27 H 1.09000 * 109.47498 * 175.04550 * 1 2 3 28 28 H 1.09001 * 109.46880 * 295.04803 * 1 2 3 29 29 H 1.09002 * 109.46994 * 55.04496 * 1 2 3 30 30 H 1.00907 * 110.99532 * 333.25394 * 4 2 1 31 31 H 1.08997 * 109.52172 * 302.31043 * 7 5 4 32 32 H 1.09005 * 109.52281 * 62.42973 * 7 5 4 33 33 H 1.09000 * 109.50712 * 177.59532 * 8 7 5 34 34 H 1.09008 * 109.50587 * 297.71527 * 8 7 5 35 35 H 1.08999 * 109.46193 * 60.83622 * 9 8 7 36 36 H 1.08995 * 109.46618 * 180.81907 * 9 8 7 37 37 H 1.00901 * 110.99922 * 297.64519 * 10 9 8 38 38 H 1.09002 * 109.46447 * 178.24086 * 11 10 9 39 39 H 1.09009 * 109.45947 * 58.28006 * 11 10 9 40 40 H 1.07997 * 119.96770 * 359.97438 * 13 12 2 41 41 H 1.08000 * 120.03792 * 180.27255 * 14 13 12 42 42 H 0.97007 * 119.99622 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.03855 * 180.02562 * 25 15 14 44 44 H 1.08000 * 119.96219 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3227 -0.1600 1.6196 6 1 3.8722 0.1890 0.7454 7 6 4.1231 -1.2614 2.3203 8 6 5.4542 -0.6827 2.8078 9 6 5.1798 0.4973 3.7429 10 7 4.4125 1.5237 3.0258 11 6 3.1101 1.0047 2.5891 12 6 2.0323 -0.7105 -1.2305 13 6 2.0714 -2.0926 -1.2617 14 6 2.5258 -2.7466 -2.3899 15 6 2.9550 -2.0148 -3.4895 16 8 3.4083 -2.6548 -4.5975 17 6 3.9217 -1.8877 -5.5804 18 1 3.8838 -0.8113 -5.5009 19 6 4.4984 -2.4808 -6.6931 20 7 4.5442 -3.7921 -6.7900 21 14 5.2103 -1.4182 -8.0545 22 1 6.2925 -0.5647 -7.5015 23 1 5.7627 -2.2880 -9.1237 24 1 4.1412 -0.5570 -8.6206 25 6 2.9198 -0.6269 -3.4530 26 6 2.4590 0.0211 -2.3238 27 1 -0.3634 -1.0238 -0.0888 28 1 -0.3633 0.4351 0.9310 29 1 -0.3633 0.5888 -0.8423 30 1 1.3471 -0.6361 1.9494 31 1 3.5562 -1.6383 3.1715 32 1 4.3132 -2.0751 1.6203 33 1 6.0102 -1.4510 3.3450 34 1 6.0376 -0.3412 1.9527 35 1 4.6083 0.1525 4.6046 36 1 6.1257 0.9209 4.0804 37 1 4.9372 1.8874 2.2445 38 1 2.5528 1.7967 2.0888 39 1 2.5482 0.6576 3.4563 40 1 1.7424 -2.6610 -0.4043 41 1 2.5520 -3.8260 -2.4154 42 1 4.9474 -4.2070 -7.5686 43 1 3.2525 -0.0551 -4.3066 44 1 2.4318 1.1004 -2.2946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817939721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:33 Heat of formation + Delta-G solvation = -31.202648 kcal Electronic energy + Delta-G solvation = -23091.336819 eV Core-core repulsion = 19814.546472 eV Total energy + Delta-G solvation = -3276.790347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91747 -40.10838 -38.60620 -36.42133 -34.28124 -32.86712 -32.22595 -31.75333 -29.66524 -28.36409 -27.36308 -24.51985 -24.07363 -23.57741 -23.03623 -21.51950 -21.08382 -19.75998 -18.78737 -17.05784 -16.78407 -16.57535 -16.38058 -16.18616 -15.70118 -15.56475 -15.49195 -15.19268 -14.83889 -14.40295 -14.18670 -14.00031 -13.96834 -13.58800 -13.49701 -13.12084 -12.99751 -12.79298 -12.57979 -12.35508 -12.32714 -12.19478 -12.14869 -12.07185 -11.86164 -11.64588 -11.32377 -11.16624 -10.77082 -9.94749 -9.73593 -8.89568 -8.82554 -8.47146 -6.15548 0.63411 0.74808 1.33359 1.44548 1.50022 2.17473 2.82559 3.07602 3.20457 3.48494 3.55106 3.81230 3.98455 4.06215 4.08172 4.13255 4.22599 4.27423 4.39315 4.41009 4.44505 4.54596 4.64664 4.65733 4.76770 4.86053 4.91378 4.95882 5.01775 5.04165 5.12181 5.15139 5.16767 5.27643 5.32243 5.36991 5.39096 5.64253 5.73185 5.76466 6.01084 6.03663 6.25245 6.29064 6.40070 6.64765 6.97400 7.79934 8.76244 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.003478 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.928430 B = 8048.872312 C = 8558.144708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.145 3.855 3 H 0.056 0.944 4 N -0.679 5.679 5 C 0.063 3.937 6 H 0.053 0.947 7 C -0.104 4.104 8 C -0.155 4.155 9 C 0.060 3.940 10 N -0.689 5.689 11 C 0.041 3.959 12 C -0.146 4.146 13 C -0.034 4.034 14 C -0.212 4.212 15 C 0.112 3.888 16 O -0.236 6.236 17 C -0.415 4.415 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.923 5.923 21 Si 1.019 2.981 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.244 4.244 26 C -0.071 4.071 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.352 0.648 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.342 0.658 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.106 0.894 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 11.512 20.244 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.036 3.964 3 H 0.074 0.926 4 N -0.311 5.311 5 C -0.049 4.049 6 H 0.071 0.929 7 C -0.142 4.142 8 C -0.195 4.195 9 C -0.069 4.069 10 N -0.318 5.318 11 C -0.091 4.091 12 C -0.147 4.147 13 C -0.053 4.053 14 C -0.232 4.232 15 C 0.062 3.938 16 O -0.143 6.143 17 C -0.491 4.491 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.181 1.181 25 C -0.263 4.263 26 C -0.089 4.089 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.173 0.827 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.160 0.840 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.158 0.842 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.399 10.896 20.300 23.288 hybrid contribution 0.569 -0.001 -1.623 1.720 sum -2.830 10.895 18.676 21.806 Atomic orbital electron populations 1.21964 0.92923 1.02658 1.02802 1.20145 0.95061 0.94077 0.87116 0.92646 1.60312 1.04569 1.58805 1.07442 1.22243 0.91077 0.94656 0.96942 0.92886 1.21482 0.95553 0.97427 0.99755 1.22267 0.97221 0.99980 1.00025 1.22042 0.98560 0.90070 0.96254 1.60678 1.05340 1.34944 1.30811 1.22698 0.92338 0.95960 0.98065 1.19742 1.05416 0.93356 0.96226 1.20688 0.95171 0.94464 0.94935 1.20504 1.09763 0.99288 0.93598 1.19920 0.93785 0.92473 0.87666 1.83940 1.70052 1.36561 1.23735 1.21778 1.38295 0.91343 0.97668 0.88267 1.26602 0.96932 0.97828 1.00729 1.70190 1.44139 1.11003 1.30766 0.84656 0.78803 0.77068 0.75729 1.18209 1.19531 1.18077 1.21185 1.10502 0.93429 1.01217 1.20936 0.96264 0.99795 0.91943 0.92463 0.90252 0.92052 0.82702 0.91125 0.93681 0.90614 0.93080 0.90476 0.89872 0.84030 0.90750 0.90068 0.84150 0.87614 0.91862 0.86632 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.17 71.98 0.66 -1.96 16 2 C 0.15 3.15 2.63 44.17 0.12 3.26 16 3 H 0.06 1.13 7.32 -2.39 -0.02 1.11 16 4 N -0.68 -13.02 5.32 -473.06 -2.52 -15.54 16 5 C 0.06 1.19 2.41 44.97 0.11 1.30 16 6 H 0.05 1.29 7.72 -2.39 -0.02 1.27 16 7 C -0.10 -2.03 5.61 30.67 0.17 -1.86 16 8 C -0.16 -2.61 6.08 30.64 0.19 -2.42 16 9 C 0.06 0.86 6.55 86.33 0.57 1.42 16 10 N -0.69 -10.82 6.87 -514.00 -3.53 -14.35 16 11 C 0.04 0.62 5.81 86.32 0.50 1.12 16 12 C -0.15 -4.58 4.86 -19.83 -0.10 -4.67 16 13 C -0.03 -1.22 9.32 22.25 0.21 -1.01 16 14 C -0.21 -9.54 9.99 22.39 0.22 -9.32 16 15 C 0.11 5.77 6.65 22.58 0.15 5.92 16 16 O -0.24 -14.70 9.76 -22.77 -0.22 -14.92 16 17 C -0.41 -24.83 9.49 67.92 0.64 -24.18 16 18 H 0.10 5.45 5.21 -2.91 -0.02 5.43 16 19 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 20 N -0.92 -57.87 13.67 21.61 0.30 -57.58 16 21 Si 1.02 43.61 29.55 68.60 2.03 45.64 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 25 C -0.24 -10.95 9.17 22.39 0.21 -10.74 16 26 C -0.07 -2.48 9.66 22.25 0.21 -2.27 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.00 8.03 -2.39 -0.02 0.98 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.35 5.17 7.88 -89.69 -0.71 4.47 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.34 5.33 8.86 -89.69 -0.79 4.54 16 38 H 0.07 1.10 7.85 -2.39 -0.02 1.08 16 39 H 0.08 1.12 8.11 -2.38 -0.02 1.10 16 40 H 0.14 4.34 7.70 -2.91 -0.02 4.32 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 43 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 44 H 0.14 3.82 8.03 -2.91 -0.02 3.80 16 Total: -1.00 -70.89 353.23 -0.12 -71.01 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.50 Total: 32.07 kcal Atomic # 6 Polarization: -50.66 SS G_CDS: 4.33 Total: -46.33 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -5.75 Total: -87.46 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.92 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.89 -0.12 -71.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817939721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.804 kcal (2) G-P(sol) polarization free energy of solvation -70.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds