Wall clock time and date at job start Tue Mar 31 2020 07:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46964 * 2 1 4 4 N 1.46902 * 109.47196 * 240.00282 * 2 1 3 5 5 C 1.46901 * 111.00060 * 84.99850 * 4 2 1 6 6 C 1.52995 * 109.46801 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.90915 * 63.89981 * 6 5 4 8 8 C 1.53991 * 109.91670 * 184.99792 * 6 5 4 9 9 C 1.54600 * 105.13993 * 120.58076 * 8 6 5 10 10 C 1.54939 * 102.92334 * 21.95592 * 9 8 6 11 11 N 1.47903 * 109.92000 * 302.58955 * 6 5 4 12 12 C 1.50696 * 109.47261 * 119.99716 * 2 1 3 13 13 C 1.38306 * 119.92766 * 79.73197 * 12 2 1 14 14 C 1.38102 * 120.06586 * 179.72788 * 13 12 2 15 15 C 1.38878 * 119.92999 * 0.54229 * 14 13 12 16 16 O 1.35750 * 120.06769 * 179.74951 * 15 14 13 17 17 C 1.34831 * 117.00156 * 174.44800 * 16 15 14 18 18 H 1.07994 * 119.99737 * 5.04760 * 17 16 15 19 19 C 1.38651 * 120.00145 * 185.06208 * 17 16 15 20 20 N 1.31559 * 119.99816 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00118 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46809 * 59.99454 * 21 19 17 23 23 H 1.48499 * 109.47034 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47114 * 299.99592 * 21 19 17 25 25 C 1.38881 * 119.86590 * 359.73031 * 15 14 13 26 26 C 1.38101 * 119.92542 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99980 * 1 2 3 29 29 H 1.09000 * 109.46931 * 60.00196 * 1 2 3 30 30 H 1.00896 * 110.99624 * 321.04383 * 4 2 1 31 31 H 1.08995 * 109.47109 * 300.00118 * 5 4 2 32 32 H 1.08998 * 109.47167 * 60.00132 * 5 4 2 33 33 H 1.09000 * 110.31156 * 239.49282 * 8 6 5 34 34 H 1.09003 * 110.31146 * 1.66882 * 8 6 5 35 35 H 1.09003 * 110.72846 * 140.32051 * 9 8 6 36 36 H 1.09006 * 110.72234 * 263.59989 * 9 8 6 37 37 H 1.09004 * 110.66112 * 81.02083 * 10 9 8 38 38 H 1.08991 * 110.67128 * 203.98629 * 10 9 8 39 39 H 1.00901 * 111.00174 * 335.83293 * 11 6 5 40 40 H 1.07997 * 119.96850 * 359.97438 * 13 12 2 41 41 H 1.07997 * 120.03126 * 180.26889 * 14 13 12 42 42 H 0.97003 * 119.99585 * 180.02562 * 20 19 17 43 43 H 1.07994 * 120.03380 * 180.02562 * 25 15 14 44 44 H 1.08001 * 119.96417 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5963 -0.5328 -3.5741 7 1 1.8897 -1.3152 -3.8510 8 6 2.7850 0.4434 -4.7500 9 6 4.2821 0.3423 -5.1224 10 6 4.6882 -1.0402 -4.5529 11 7 3.9207 -1.1238 -3.2840 12 6 2.0324 -0.7103 1.2305 13 6 2.0610 -2.0926 1.2659 14 6 2.5260 -2.7465 2.3899 15 6 2.9547 -2.0146 3.4896 16 8 3.4076 -2.6545 4.5978 17 6 3.9153 -1.8871 5.5833 18 1 3.8737 -0.8108 5.5053 19 6 4.4909 -2.4797 6.6968 20 7 4.5413 -3.7909 6.7920 21 14 5.1949 -1.4164 8.0618 22 1 4.1209 -0.5601 8.6260 23 1 5.7475 -2.2858 9.1314 24 1 6.2755 -0.5581 7.5134 25 6 2.9195 -0.6267 3.4531 26 6 2.4590 0.0213 2.3238 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.4496 -1.4978 -1.4100 31 1 1.0871 0.6164 -2.5525 32 1 2.7588 1.0463 -2.1182 33 1 2.1642 0.1435 -5.5942 34 1 2.5398 1.4597 -4.4412 35 1 4.4131 0.3676 -6.2042 36 1 4.8529 1.1389 -4.6451 37 1 4.3935 -1.8384 -5.2342 38 1 5.7603 -1.0770 -4.3601 39 1 4.3876 -0.6198 -2.5451 40 1 1.7230 -2.6613 0.4122 41 1 2.5522 -3.8258 2.4153 42 1 4.9438 -4.2054 7.5712 43 1 3.2526 -0.0549 4.3065 44 1 2.4318 1.1005 2.2946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817952215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:41 Heat of formation + Delta-G solvation = -4.594115 kcal Electronic energy + Delta-G solvation = -22528.377126 eV Core-core repulsion = 19252.740611 eV Total energy + Delta-G solvation = -3275.636514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.34268 -38.86799 -37.30893 -35.38160 -32.31089 -31.56397 -30.10128 -30.06409 -28.59261 -27.76533 -25.34194 -24.26987 -22.48708 -21.84407 -21.50515 -20.57586 -19.80788 -17.84888 -16.94889 -16.47555 -15.75163 -15.22785 -15.03974 -14.76083 -14.44348 -14.13239 -13.90345 -13.86694 -13.48868 -13.42543 -12.93121 -12.71696 -12.52135 -12.29453 -12.14383 -11.96170 -11.64090 -11.62988 -11.48746 -11.27702 -11.17336 -11.10382 -10.84747 -10.60388 -10.56309 -10.35785 -10.30638 -9.25193 -8.75960 -8.66329 -8.25138 -8.05360 -7.05800 -6.38363 -3.97104 2.33165 2.42976 3.16500 3.17893 3.20484 3.91984 4.02045 4.33519 4.47790 4.55537 4.68109 4.82662 4.94712 5.09080 5.14651 5.21857 5.26832 5.29574 5.35633 5.41637 5.46228 5.50630 5.55228 5.66226 5.67640 5.73182 5.84082 5.87556 5.91324 5.99025 6.04725 6.18832 6.32221 6.51518 6.69862 6.81389 6.95476 7.10677 7.15583 7.36232 7.38856 7.49740 7.52077 7.54806 7.93411 8.07021 9.07423 9.79555 10.79961 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.002889 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.404705 B = 9690.590551 C =10110.223533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.141 3.859 3 H 0.072 0.928 4 N -0.669 5.669 5 C 0.055 3.945 6 C 0.076 3.924 7 H 0.080 0.920 8 C -0.148 4.148 9 C -0.158 4.158 10 C 0.039 3.961 11 N -0.654 5.654 12 C -0.165 4.165 13 C -0.050 4.050 14 C -0.194 4.194 15 C 0.153 3.847 16 O -0.181 6.181 17 C -0.391 4.391 18 H 0.090 0.910 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.234 4.234 26 C -0.069 4.069 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.341 0.659 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.347 0.653 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.269 0.731 43 H 0.124 0.876 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 9.384 -20.174 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.090 0.910 4 N -0.299 5.299 5 C -0.075 4.075 6 C -0.035 4.035 7 H 0.098 0.902 8 C -0.188 4.188 9 C -0.198 4.198 10 C -0.091 4.091 11 N -0.283 5.283 12 C -0.166 4.166 13 C -0.069 4.069 14 C -0.213 4.213 15 C 0.100 3.900 16 O -0.084 6.084 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.253 4.253 26 C -0.088 4.088 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.160 0.840 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.165 0.835 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.142 0.858 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.920 8.323 -19.790 21.824 hybrid contribution -0.408 1.756 0.383 1.843 sum -4.328 10.079 -19.407 22.293 Atomic orbital electron populations 1.22500 0.97451 1.02147 1.01393 1.20192 0.91660 0.96582 0.88439 0.90957 1.60528 1.57894 1.08948 1.02557 1.22290 0.99203 0.95448 0.90563 1.22375 0.93261 0.94847 0.92999 0.90196 1.22857 0.96773 1.00254 0.98894 1.23127 0.95998 0.99187 1.01446 1.23150 0.98243 0.95464 0.92256 1.62678 1.02616 1.56685 1.06323 1.19047 1.09077 0.93544 0.94958 1.20314 0.97373 0.93381 0.95803 1.20214 1.08788 0.99322 0.92985 1.19387 0.92129 0.90908 0.87595 1.83979 1.67589 1.34989 1.21882 1.21255 1.37970 0.90634 0.96849 0.89243 1.25264 0.96834 0.96283 0.98162 1.70034 1.41891 1.08698 1.29402 0.85806 0.79265 0.78928 0.79561 1.19595 1.20328 1.19547 1.21088 1.09810 0.94416 1.00007 1.20524 0.97458 0.97968 0.92865 0.92331 0.91941 0.93565 0.83974 0.95032 0.91292 0.91394 0.91448 0.91215 0.91630 0.90580 0.90900 0.83484 0.87290 0.86759 0.92069 0.85791 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.14 37.16 0.34 -1.66 16 2 C 0.14 1.82 2.79 -68.86 -0.19 1.63 16 3 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 4 N -0.67 -7.84 5.50 -107.96 -0.59 -8.43 16 5 C 0.05 0.52 4.56 -3.83 -0.02 0.51 16 6 C 0.08 0.69 3.63 -66.65 -0.24 0.45 16 7 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 8 C -0.15 -1.12 6.57 -25.37 -0.17 -1.29 16 9 C -0.16 -1.17 7.06 -24.87 -0.18 -1.35 16 10 C 0.04 0.33 7.55 -1.90 -0.01 0.32 16 11 N -0.65 -6.91 7.20 -103.13 -0.74 -7.65 16 12 C -0.16 -2.79 4.96 -104.58 -0.52 -3.31 16 13 C -0.05 -0.91 9.31 -39.61 -0.37 -1.28 16 14 C -0.19 -4.21 9.99 -39.39 -0.39 -4.61 16 15 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 16 O -0.18 -5.27 9.76 0.05 0.00 -5.27 16 17 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 18 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 21 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.23 -5.17 9.17 -39.39 -0.36 -5.54 16 26 C -0.07 -1.28 9.66 -39.61 -0.38 -1.67 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.45 7.45 -51.93 -0.39 0.06 16 30 H 0.34 3.91 7.82 -39.29 -0.31 3.60 16 31 H 0.03 0.28 7.44 -51.93 -0.39 -0.11 16 32 H 0.07 0.68 8.06 -51.93 -0.42 0.27 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.49 7.69 -51.93 -0.40 0.09 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.35 3.96 8.40 -39.29 -0.33 3.63 16 40 H 0.11 1.71 7.25 -52.49 -0.38 1.33 16 41 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.12 2.75 5.64 -52.49 -0.30 2.46 16 44 H 0.10 1.61 8.03 -52.49 -0.42 1.19 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -30.43 355.13 -9.74 -40.17 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.94 Total: 9.18 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -2.56 Total: -24.12 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.58 Total: -41.14 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: 0.00 Total: -5.27 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.43 -9.74 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817952215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.578 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds