Wall clock time and date at job start Tue Mar 31 2020 07:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46964 * 2 1 4 4 N 1.46902 * 109.47196 * 240.00282 * 2 1 3 5 5 C 1.46901 * 111.00060 * 84.99850 * 4 2 1 6 6 C 1.52995 * 109.46801 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.90915 * 63.89981 * 6 5 4 8 8 C 1.53991 * 109.91670 * 184.99792 * 6 5 4 9 9 C 1.54600 * 105.13993 * 120.58076 * 8 6 5 10 10 C 1.54939 * 102.92334 * 21.95592 * 9 8 6 11 11 N 1.47903 * 109.92000 * 302.58955 * 6 5 4 12 12 C 1.50696 * 109.47261 * 119.99716 * 2 1 3 13 13 C 1.38306 * 119.92766 * 79.73197 * 12 2 1 14 14 C 1.38102 * 120.06586 * 179.72788 * 13 12 2 15 15 C 1.38878 * 119.92999 * 0.54229 * 14 13 12 16 16 O 1.35750 * 120.06769 * 179.74951 * 15 14 13 17 17 C 1.34831 * 117.00156 * 174.44800 * 16 15 14 18 18 H 1.07994 * 119.99737 * 5.04760 * 17 16 15 19 19 C 1.38651 * 120.00145 * 185.06208 * 17 16 15 20 20 N 1.31559 * 119.99816 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00118 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46809 * 59.99454 * 21 19 17 23 23 H 1.48499 * 109.47034 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47114 * 299.99592 * 21 19 17 25 25 C 1.38881 * 119.86590 * 359.73031 * 15 14 13 26 26 C 1.38101 * 119.92542 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99980 * 1 2 3 29 29 H 1.09000 * 109.46931 * 60.00196 * 1 2 3 30 30 H 1.00896 * 110.99624 * 321.04383 * 4 2 1 31 31 H 1.08995 * 109.47109 * 300.00118 * 5 4 2 32 32 H 1.08998 * 109.47167 * 60.00132 * 5 4 2 33 33 H 1.09000 * 110.31156 * 239.49282 * 8 6 5 34 34 H 1.09003 * 110.31146 * 1.66882 * 8 6 5 35 35 H 1.09003 * 110.72846 * 140.32051 * 9 8 6 36 36 H 1.09006 * 110.72234 * 263.59989 * 9 8 6 37 37 H 1.09004 * 110.66112 * 81.02083 * 10 9 8 38 38 H 1.08991 * 110.67128 * 203.98629 * 10 9 8 39 39 H 1.00901 * 111.00174 * 335.83293 * 11 6 5 40 40 H 1.07997 * 119.96850 * 359.97438 * 13 12 2 41 41 H 1.07997 * 120.03126 * 180.26889 * 14 13 12 42 42 H 0.97003 * 119.99585 * 180.02562 * 20 19 17 43 43 H 1.07994 * 120.03380 * 180.02562 * 25 15 14 44 44 H 1.08001 * 119.96417 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5963 -0.5328 -3.5741 7 1 1.8897 -1.3152 -3.8510 8 6 2.7850 0.4434 -4.7500 9 6 4.2821 0.3423 -5.1224 10 6 4.6882 -1.0402 -4.5529 11 7 3.9207 -1.1238 -3.2840 12 6 2.0324 -0.7103 1.2305 13 6 2.0610 -2.0926 1.2659 14 6 2.5260 -2.7465 2.3899 15 6 2.9547 -2.0146 3.4896 16 8 3.4076 -2.6545 4.5978 17 6 3.9153 -1.8871 5.5833 18 1 3.8737 -0.8108 5.5053 19 6 4.4909 -2.4797 6.6968 20 7 4.5413 -3.7909 6.7920 21 14 5.1949 -1.4164 8.0618 22 1 4.1209 -0.5601 8.6260 23 1 5.7475 -2.2858 9.1314 24 1 6.2755 -0.5581 7.5134 25 6 2.9195 -0.6267 3.4531 26 6 2.4590 0.0213 2.3238 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.4496 -1.4978 -1.4100 31 1 1.0871 0.6164 -2.5525 32 1 2.7588 1.0463 -2.1182 33 1 2.1642 0.1435 -5.5942 34 1 2.5398 1.4597 -4.4412 35 1 4.4131 0.3676 -6.2042 36 1 4.8529 1.1389 -4.6451 37 1 4.3935 -1.8384 -5.2342 38 1 5.7603 -1.0770 -4.3601 39 1 4.3876 -0.6198 -2.5451 40 1 1.7230 -2.6613 0.4122 41 1 2.5522 -3.8258 2.4153 42 1 4.9438 -4.2054 7.5712 43 1 3.2526 -0.0549 4.3065 44 1 2.4318 1.1005 2.2946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817952215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:40 Heat of formation + Delta-G solvation = -25.521496 kcal Electronic energy + Delta-G solvation = -22529.284605 eV Core-core repulsion = 19252.740611 eV Total energy + Delta-G solvation = -3276.543994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81808 -39.85769 -38.76608 -36.69144 -34.26485 -32.64895 -31.73202 -30.73012 -29.76124 -28.89733 -27.32795 -25.13218 -23.92273 -23.23939 -22.30720 -21.59816 -20.91853 -19.70775 -18.77916 -17.44326 -16.58539 -16.35813 -16.25172 -16.04519 -15.89729 -15.49091 -15.31432 -15.14757 -14.70644 -14.49740 -14.36285 -14.02676 -13.92751 -13.50036 -13.43383 -12.98918 -12.87180 -12.73932 -12.60636 -12.38422 -12.26498 -12.14832 -12.11037 -11.94696 -11.86969 -11.60414 -11.33532 -11.11665 -10.74725 -9.69894 -9.42154 -9.14462 -8.80078 -8.44260 -6.12243 0.67641 0.78940 1.35225 1.46592 1.51870 2.19864 2.85060 3.10575 3.25835 3.58161 3.58987 3.85274 3.91002 4.02462 4.14362 4.15639 4.23646 4.30440 4.40316 4.42673 4.55468 4.64089 4.64696 4.67547 4.75988 4.78517 4.91475 4.97312 4.98489 5.05843 5.10718 5.16621 5.19256 5.23257 5.30841 5.35822 5.37366 5.65704 5.77114 5.83792 6.01507 6.06831 6.26707 6.34515 6.54092 6.62698 7.00462 7.83731 8.79266 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.002889 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.404705 B = 9690.590551 C =10110.223533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.146 3.854 3 H 0.085 0.915 4 N -0.680 5.680 5 C 0.062 3.938 6 C 0.077 3.923 7 H 0.076 0.924 8 C -0.144 4.144 9 C -0.153 4.153 10 C 0.036 3.964 11 N -0.674 5.674 12 C -0.138 4.138 13 C -0.044 4.044 14 C -0.207 4.207 15 C 0.109 3.891 16 O -0.236 6.236 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.924 5.924 21 Si 1.019 2.981 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.258 1.258 25 C -0.242 4.242 26 C -0.069 4.069 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.340 0.660 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 12.222 -22.576 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.036 3.964 3 H 0.103 0.897 4 N -0.311 5.311 5 C -0.068 4.068 6 C -0.033 4.033 7 H 0.094 0.906 8 C -0.183 4.183 9 C -0.193 4.193 10 C -0.093 4.093 11 N -0.302 5.302 12 C -0.139 4.139 13 C -0.062 4.062 14 C -0.227 4.227 15 C 0.059 3.941 16 O -0.143 6.143 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.562 5.562 21 Si 0.838 3.162 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.262 4.262 26 C -0.088 4.088 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.873 11.188 -22.261 25.387 hybrid contribution -0.254 0.934 0.760 1.231 sum -5.128 12.122 -21.502 25.211 Atomic orbital electron populations 1.22428 0.95690 1.02386 1.02451 1.20146 0.92807 0.96475 0.86967 0.89688 1.60420 1.58076 1.09568 1.03023 1.22272 1.00020 0.94869 0.89619 1.22367 0.92451 0.95050 0.93445 0.90619 1.22825 0.96864 1.00173 0.98466 1.23085 0.95921 0.98181 1.02066 1.23177 0.98181 0.96324 0.91657 1.62692 1.03456 1.57119 1.06939 1.19644 1.05086 0.93182 0.95994 1.20640 0.96035 0.94339 0.95170 1.20455 1.09301 0.99315 0.93596 1.19916 0.93939 0.92499 0.87705 1.83939 1.70291 1.36505 1.23604 1.21774 1.38364 0.91355 0.97414 0.88233 1.26597 0.96969 0.97826 1.00805 1.70190 1.44252 1.11018 1.30752 0.84655 0.78820 0.77053 0.75714 1.18105 1.19622 1.18199 1.21199 1.10286 0.93430 1.01248 1.20911 0.96204 0.99889 0.91763 0.92562 0.92332 0.91144 0.83658 0.93437 0.91378 0.90606 0.90714 0.90105 0.91691 0.90678 0.90855 0.84284 0.84348 0.87512 0.91914 0.86607 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.14 71.98 0.66 -2.49 16 2 C 0.15 3.18 2.79 44.17 0.12 3.30 16 3 H 0.08 1.73 7.66 -2.39 -0.02 1.72 16 4 N -0.68 -13.52 5.50 -495.46 -2.73 -16.25 16 5 C 0.06 0.95 4.56 86.30 0.39 1.34 16 6 C 0.08 1.19 3.63 45.06 0.16 1.35 16 7 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 8 C -0.14 -1.72 6.57 31.47 0.21 -1.52 16 9 C -0.15 -1.88 7.06 31.80 0.22 -1.66 16 10 C 0.04 0.56 7.55 86.65 0.65 1.22 16 11 N -0.67 -12.97 7.20 -480.21 -3.46 -16.42 16 12 C -0.14 -4.29 4.96 -19.83 -0.10 -4.39 16 13 C -0.04 -1.52 9.31 22.25 0.21 -1.31 16 14 C -0.21 -9.27 9.99 22.39 0.22 -9.04 16 15 C 0.11 5.65 6.65 22.58 0.15 5.80 16 16 O -0.24 -14.73 9.76 -22.75 -0.22 -14.96 16 17 C -0.41 -24.75 9.49 67.92 0.64 -24.11 16 18 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 19 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 20 N -0.92 -58.16 13.67 21.61 0.30 -57.87 16 21 Si 1.02 43.81 29.55 68.60 2.03 45.84 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 C -0.24 -10.86 9.17 22.39 0.21 -10.65 16 26 C -0.07 -2.42 9.66 22.25 0.21 -2.20 16 27 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.01 7.45 -2.39 -0.02 0.99 16 30 H 0.34 6.64 7.82 -89.70 -0.70 5.94 16 31 H 0.05 0.61 7.44 -2.39 -0.02 0.59 16 32 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.81 7.69 -2.39 -0.02 0.79 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.34 7.18 8.40 -89.69 -0.75 6.42 16 40 H 0.14 4.00 7.25 -2.91 -0.02 3.97 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 43 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 44 H 0.14 3.83 8.03 -2.91 -0.02 3.81 16 Total: -1.00 -71.00 355.13 -0.09 -71.09 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -0.45 Total: 33.92 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 4.44 Total: -45.36 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -5.89 Total: -90.54 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.22 Total: -14.96 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.00 -0.09 -71.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817952215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.573 kcal (2) G-P(sol) polarization free energy of solvation -71.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds