Wall clock time and date at job start Tue Mar 31 2020 07:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46954 * 2 1 4 4 N 1.46890 * 109.47406 * 120.00235 * 2 1 3 5 5 C 1.46903 * 111.00279 * 274.99857 * 4 2 1 6 6 H 1.09004 * 109.46502 * 34.99798 * 5 4 2 7 7 C 1.52995 * 109.47357 * 275.00472 * 5 4 2 8 8 N 1.46899 * 109.47575 * 54.99124 * 7 5 4 9 9 C 1.53000 * 109.47203 * 154.99859 * 5 4 2 10 10 C 1.53005 * 117.49514 * 248.62043 * 9 5 4 11 11 C 1.52994 * 60.00135 * 252.51244 * 10 9 5 12 12 C 1.50700 * 109.47184 * 240.00325 * 2 1 3 13 13 C 1.38299 * 119.93268 * 279.72716 * 12 2 1 14 14 C 1.38101 * 120.07261 * 179.72197 * 13 12 2 15 15 C 1.38881 * 119.92864 * 0.54790 * 14 13 12 16 16 O 1.35743 * 120.07044 * 179.74466 * 15 14 13 17 17 C 1.34828 * 117.00122 * 174.44260 * 16 15 14 18 18 H 1.07999 * 120.00347 * 5.05464 * 17 16 15 19 19 C 1.38656 * 119.99852 * 185.05924 * 17 16 15 20 20 N 1.31549 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47250 * 59.99831 * 21 19 17 23 23 H 1.48505 * 109.47181 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47259 * 299.99951 * 21 19 17 25 25 C 1.38886 * 119.86062 * 359.72515 * 15 14 13 26 26 C 1.38102 * 119.93109 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.47450 * 60.00039 * 1 2 3 28 28 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47089 * 299.99848 * 1 2 3 30 30 H 1.00895 * 111.00276 * 38.95494 * 4 2 1 31 31 H 1.08997 * 109.47545 * 174.99781 * 7 5 4 32 32 H 1.09009 * 109.47013 * 294.99371 * 7 5 4 33 33 H 1.00902 * 110.99348 * 56.04910 * 8 7 5 34 34 H 1.00895 * 111.00259 * 179.97438 * 8 7 5 35 35 H 1.08994 * 115.55072 * 34.33640 * 9 5 4 36 36 H 1.08998 * 117.50226 * 0.02562 * 10 9 5 37 37 H 1.09006 * 117.49239 * 145.02524 * 10 9 5 38 38 H 1.08996 * 117.50341 * 252.50847 * 11 10 9 39 39 H 1.09004 * 117.49729 * 107.49091 * 11 10 9 40 40 H 1.08010 * 119.96184 * 359.97438 * 13 12 2 41 41 H 1.07999 * 120.03268 * 180.26622 * 14 13 12 42 42 H 0.97008 * 120.00392 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.03187 * 179.97438 * 25 15 14 44 44 H 1.07993 * 119.96328 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 1 1.2577 0.9329 2.2906 7 6 3.4111 0.9809 2.3223 8 7 3.5664 1.6550 1.0263 9 6 1.9771 -0.5798 3.6453 10 6 0.7053 -0.4108 4.4788 11 6 2.0230 0.1980 4.9621 12 6 2.0323 -0.7103 -1.2305 13 6 2.0714 -2.0924 -1.2618 14 6 2.5259 -2.7464 -2.3901 15 6 2.9545 -2.0146 -3.4898 16 8 3.4066 -2.6544 -4.5984 17 6 3.6984 -1.8901 -5.6701 18 1 3.6472 -0.8139 -5.5959 19 6 4.0641 -2.4859 -6.8675 20 7 4.1268 -3.7968 -6.9578 21 14 4.4676 -1.4270 -8.3526 22 1 5.6123 -0.5376 -8.0301 23 1 4.8269 -2.2992 -9.4995 24 1 3.2850 -0.6024 -8.7086 25 6 2.9194 -0.6267 -3.4532 26 6 2.4580 0.0214 -2.3242 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.4497 -1.4979 1.4099 31 1 3.4210 1.7225 3.1211 32 1 4.2327 0.2794 2.4676 33 1 2.7833 2.2632 0.8391 34 1 4.4367 2.1636 0.9853 35 1 2.4401 -1.5664 3.6272 36 1 -0.0565 0.2716 4.1020 37 1 0.3311 -1.2866 5.0092 38 1 2.5158 -0.2770 5.8103 39 1 2.1284 1.2813 4.9032 40 1 1.7424 -2.6610 -0.4045 41 1 2.5521 -3.8258 -2.4155 42 1 4.3823 -4.2136 -7.7957 43 1 3.2524 -0.0548 -4.3066 44 1 2.4300 1.1005 -2.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817960350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:22 Heat of formation + Delta-G solvation = 29.688424 kcal Electronic energy + Delta-G solvation = -22903.270221 eV Core-core repulsion = 19629.120310 eV Total energy + Delta-G solvation = -3274.149912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.33659 -38.59655 -36.93043 -35.39213 -33.71159 -32.13369 -30.56715 -29.92205 -27.79286 -26.64899 -25.25781 -23.30925 -22.42353 -22.18684 -21.67503 -20.37470 -19.67879 -17.78411 -16.87103 -16.71602 -15.71598 -15.33241 -14.76157 -14.65912 -14.43695 -14.25763 -13.94671 -13.61863 -13.55004 -13.34606 -12.92469 -12.64679 -12.57338 -12.35379 -12.10079 -11.88230 -11.67466 -11.56551 -11.30805 -11.12963 -10.97795 -10.71469 -10.50920 -10.48887 -10.36825 -10.26217 -10.09942 -9.17572 -8.70174 -8.56706 -8.12733 -7.95019 -6.95128 -6.33067 -3.91404 2.42979 2.55073 3.19670 3.20935 3.23358 3.47059 4.06393 4.10423 4.33121 4.60312 4.70202 4.73641 4.90591 5.09671 5.17967 5.22125 5.26407 5.30946 5.34900 5.42031 5.47382 5.55414 5.59688 5.65237 5.80017 5.84629 5.90475 5.94218 5.99940 6.15219 6.16440 6.30627 6.41852 6.62881 6.90979 7.02688 7.11179 7.23258 7.27238 7.37334 7.49884 7.61027 7.64719 7.67612 8.03537 8.12914 9.13081 9.86897 10.85608 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032553 B = 0.003040 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.919289 B = 9209.386639 C = 9484.365110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.141 3.859 3 H 0.097 0.903 4 N -0.658 5.658 5 C 0.121 3.879 6 H 0.037 0.963 7 C 0.078 3.922 8 N -0.832 5.832 9 C -0.153 4.153 10 C -0.181 4.181 11 C -0.176 4.176 12 C -0.148 4.148 13 C -0.058 4.058 14 C -0.196 4.196 15 C 0.151 3.849 16 O -0.184 6.184 17 C -0.388 4.388 18 H 0.090 0.910 19 C 0.037 3.963 20 N -0.867 5.867 21 Si 0.939 3.061 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.271 1.271 25 C -0.234 4.234 26 C -0.063 4.063 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.333 0.667 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.331 0.669 34 H 0.337 0.663 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.268 0.732 43 H 0.123 0.877 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 10.417 20.046 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.115 0.885 4 N -0.288 5.288 5 C 0.010 3.990 6 H 0.055 0.945 7 C -0.053 4.053 8 N -0.363 5.363 9 C -0.172 4.172 10 C -0.218 4.218 11 C -0.213 4.213 12 C -0.149 4.149 13 C -0.076 4.076 14 C -0.215 4.215 15 C 0.098 3.902 16 O -0.088 6.088 17 C -0.465 4.465 18 H 0.107 0.893 19 C -0.166 4.166 20 N -0.503 5.503 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.196 1.196 25 C -0.253 4.253 26 C -0.081 4.081 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.152 0.848 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.140 0.860 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.893 9.352 19.341 22.033 hybrid contribution -0.709 1.500 0.039 1.660 sum -5.601 10.852 19.380 22.907 Atomic orbital electron populations 1.22585 0.98423 1.01873 1.01049 1.20405 0.90264 0.98433 0.87760 0.88489 1.60491 1.57490 1.08550 1.02306 1.21041 0.96044 0.93379 0.88497 0.94533 1.21770 0.98334 0.96319 0.88906 1.58773 1.06660 1.37774 1.33064 1.22455 1.01983 1.01296 0.91450 1.23025 0.91300 1.03296 1.04218 1.22893 1.01062 0.99759 0.97600 1.19021 1.07905 0.93185 0.94834 1.20312 0.98046 0.93634 0.95622 1.20185 1.08640 0.99133 0.93552 1.19366 0.91480 0.90940 0.88396 1.83973 1.71433 1.35192 1.18190 1.21247 1.47109 0.90677 0.87478 0.89296 1.25245 0.97068 0.96232 0.98059 1.70031 1.44892 1.08615 1.26777 0.85822 0.79102 0.78923 0.79788 1.19601 1.20396 1.19625 1.21094 1.09853 0.94344 1.00039 1.20487 0.97060 0.97964 0.92637 0.92095 0.92660 0.93916 0.84781 0.96331 0.90443 0.85573 0.85000 0.86851 0.89053 0.88753 0.88733 0.88990 0.87639 0.87007 0.92172 0.85958 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 9.12 37.16 0.34 -1.82 16 2 C 0.14 1.88 2.25 -68.87 -0.16 1.72 16 3 H 0.10 1.26 4.59 -51.93 -0.24 1.02 16 4 N -0.66 -8.00 5.46 -100.96 -0.55 -8.55 16 5 C 0.12 1.19 2.52 -67.71 -0.17 1.02 16 6 H 0.04 0.36 6.87 -51.93 -0.36 0.01 16 7 C 0.08 0.77 6.25 -3.83 -0.02 0.75 16 8 N -0.83 -8.64 7.71 -10.37 -0.08 -8.71 16 9 C -0.15 -1.30 5.11 -90.62 -0.46 -1.77 16 10 C -0.18 -1.34 10.18 -26.73 -0.27 -1.62 16 11 C -0.18 -1.26 9.79 -26.73 -0.26 -1.52 16 12 C -0.15 -2.58 4.96 -104.57 -0.52 -3.10 16 13 C -0.06 -1.08 9.32 -39.61 -0.37 -1.44 16 14 C -0.20 -4.36 9.99 -39.39 -0.39 -4.75 16 15 C 0.15 3.81 6.65 -39.10 -0.26 3.55 16 16 O -0.18 -5.45 9.76 0.08 0.00 -5.45 16 17 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16 18 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.87 -26.20 13.67 55.48 0.76 -25.44 16 21 Si 0.94 21.13 29.55 -169.99 -5.02 16.10 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 26 C -0.06 -1.19 9.66 -39.61 -0.38 -1.58 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16 29 H 0.04 0.44 7.43 -51.93 -0.39 0.05 16 30 H 0.33 3.90 7.44 -39.29 -0.29 3.60 16 31 H 0.02 0.16 7.47 -51.93 -0.39 -0.23 16 32 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.33 3.04 7.58 -39.29 -0.30 2.74 16 34 H 0.34 3.08 9.08 -39.29 -0.36 2.72 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.63 7.66 -51.93 -0.40 0.23 16 40 H 0.11 1.70 7.23 -52.48 -0.38 1.32 16 41 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.12 2.78 5.64 -52.49 -0.30 2.49 16 44 H 0.10 1.68 8.03 -52.49 -0.42 1.26 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -31.62 354.90 -9.24 -40.85 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.59 Total: 12.04 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -3.10 Total: -26.19 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.13 Total: -42.71 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: 0.00 Total: -5.45 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.62 -9.24 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817960350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.541 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds