Wall clock time and date at job start Tue Mar 31 2020 07:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46954 * 2 1 4 4 N 1.46890 * 109.47406 * 120.00235 * 2 1 3 5 5 C 1.46903 * 111.00279 * 274.99857 * 4 2 1 6 6 H 1.09004 * 109.46502 * 34.99798 * 5 4 2 7 7 C 1.52995 * 109.47357 * 275.00472 * 5 4 2 8 8 N 1.46899 * 109.47575 * 54.99124 * 7 5 4 9 9 C 1.53000 * 109.47203 * 154.99859 * 5 4 2 10 10 C 1.53005 * 117.49514 * 248.62043 * 9 5 4 11 11 C 1.52994 * 60.00135 * 252.51244 * 10 9 5 12 12 C 1.50700 * 109.47184 * 240.00325 * 2 1 3 13 13 C 1.38299 * 119.93268 * 279.72716 * 12 2 1 14 14 C 1.38101 * 120.07261 * 179.72197 * 13 12 2 15 15 C 1.38881 * 119.92864 * 0.54790 * 14 13 12 16 16 O 1.35743 * 120.07044 * 179.74466 * 15 14 13 17 17 C 1.34828 * 117.00122 * 174.44260 * 16 15 14 18 18 H 1.07999 * 120.00347 * 5.05464 * 17 16 15 19 19 C 1.38656 * 119.99852 * 185.05924 * 17 16 15 20 20 N 1.31549 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47250 * 59.99831 * 21 19 17 23 23 H 1.48505 * 109.47181 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47259 * 299.99951 * 21 19 17 25 25 C 1.38886 * 119.86062 * 359.72515 * 15 14 13 26 26 C 1.38102 * 119.93109 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.47450 * 60.00039 * 1 2 3 28 28 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47089 * 299.99848 * 1 2 3 30 30 H 1.00895 * 111.00276 * 38.95494 * 4 2 1 31 31 H 1.08997 * 109.47545 * 174.99781 * 7 5 4 32 32 H 1.09009 * 109.47013 * 294.99371 * 7 5 4 33 33 H 1.00902 * 110.99348 * 56.04910 * 8 7 5 34 34 H 1.00895 * 111.00259 * 179.97438 * 8 7 5 35 35 H 1.08994 * 115.55072 * 34.33640 * 9 5 4 36 36 H 1.08998 * 117.50226 * 0.02562 * 10 9 5 37 37 H 1.09006 * 117.49239 * 145.02524 * 10 9 5 38 38 H 1.08996 * 117.50341 * 252.50847 * 11 10 9 39 39 H 1.09004 * 117.49729 * 107.49091 * 11 10 9 40 40 H 1.08010 * 119.96184 * 359.97438 * 13 12 2 41 41 H 1.07999 * 120.03268 * 180.26622 * 14 13 12 42 42 H 0.97008 * 120.00392 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.03187 * 179.97438 * 25 15 14 44 44 H 1.07993 * 119.96328 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 1 1.2577 0.9329 2.2906 7 6 3.4111 0.9809 2.3223 8 7 3.5664 1.6550 1.0263 9 6 1.9771 -0.5798 3.6453 10 6 0.7053 -0.4108 4.4788 11 6 2.0230 0.1980 4.9621 12 6 2.0323 -0.7103 -1.2305 13 6 2.0714 -2.0924 -1.2618 14 6 2.5259 -2.7464 -2.3901 15 6 2.9545 -2.0146 -3.4898 16 8 3.4066 -2.6544 -4.5984 17 6 3.6984 -1.8901 -5.6701 18 1 3.6472 -0.8139 -5.5959 19 6 4.0641 -2.4859 -6.8675 20 7 4.1268 -3.7968 -6.9578 21 14 4.4676 -1.4270 -8.3526 22 1 5.6123 -0.5376 -8.0301 23 1 4.8269 -2.2992 -9.4995 24 1 3.2850 -0.6024 -8.7086 25 6 2.9194 -0.6267 -3.4532 26 6 2.4580 0.0214 -2.3242 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.4497 -1.4979 1.4099 31 1 3.4210 1.7225 3.1211 32 1 4.2327 0.2794 2.4676 33 1 2.7833 2.2632 0.8391 34 1 4.4367 2.1636 0.9853 35 1 2.4401 -1.5664 3.6272 36 1 -0.0565 0.2716 4.1020 37 1 0.3311 -1.2866 5.0092 38 1 2.5158 -0.2770 5.8103 39 1 2.1284 1.2813 4.9032 40 1 1.7424 -2.6610 -0.4045 41 1 2.5521 -3.8258 -2.4155 42 1 4.3823 -4.2136 -7.7957 43 1 3.2524 -0.0548 -4.3066 44 1 2.4300 1.1005 -2.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817960350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:22 Heat of formation + Delta-G solvation = 8.199861 kcal Electronic energy + Delta-G solvation = -22904.202035 eV Core-core repulsion = 19629.120310 eV Total energy + Delta-G solvation = -3275.081726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79841 -39.78065 -38.37367 -36.47743 -34.72990 -34.13263 -31.84784 -31.42369 -29.27321 -27.50082 -27.29196 -24.22347 -23.70056 -23.14999 -22.90536 -21.44831 -20.85725 -19.67722 -18.73483 -17.58247 -16.68893 -16.41173 -16.21935 -16.11466 -15.57725 -15.45041 -15.33104 -15.07711 -14.97793 -14.40925 -14.28109 -14.02927 -13.91940 -13.55326 -13.46287 -13.25757 -12.88594 -12.64823 -12.44593 -12.34603 -12.25228 -12.15000 -12.01433 -11.79596 -11.54243 -11.17565 -11.06460 -10.89657 -10.72250 -9.64221 -9.36444 -9.06705 -8.72427 -8.42388 -6.09929 0.73206 0.86383 1.35705 1.47432 1.52373 2.21274 2.84975 2.91238 3.20132 3.37496 3.61722 3.62674 3.98197 4.08920 4.14616 4.17802 4.22532 4.29121 4.36387 4.47447 4.53596 4.59533 4.63960 4.68080 4.74458 4.81454 4.83261 4.98127 5.04667 5.07235 5.20753 5.21741 5.24406 5.28085 5.33858 5.37846 5.43543 5.72671 5.81592 5.96149 6.09638 6.30037 6.38258 6.49299 6.66946 6.74085 7.02532 7.87075 8.81378 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032553 B = 0.003040 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.919289 B = 9209.386639 C = 9484.365110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.146 3.854 3 H 0.109 0.891 4 N -0.671 5.671 5 C 0.127 3.873 6 H 0.045 0.955 7 C 0.080 3.920 8 N -0.848 5.848 9 C -0.163 4.163 10 C -0.176 4.176 11 C -0.169 4.169 12 C -0.123 4.123 13 C -0.053 4.053 14 C -0.209 4.209 15 C 0.106 3.894 16 O -0.238 6.238 17 C -0.411 4.411 18 H 0.100 0.900 19 C -0.026 4.026 20 N -0.925 5.925 21 Si 1.018 2.982 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.242 4.242 26 C -0.062 4.062 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.337 0.663 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.339 0.661 34 H 0.343 0.657 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.105 0.895 42 H 0.271 0.729 43 H 0.114 0.886 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 13.158 22.291 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.036 3.964 3 H 0.126 0.874 4 N -0.302 5.302 5 C 0.017 3.983 6 H 0.063 0.937 7 C -0.051 4.051 8 N -0.380 5.380 9 C -0.182 4.182 10 C -0.213 4.213 11 C -0.206 4.206 12 C -0.124 4.124 13 C -0.071 4.071 14 C -0.228 4.228 15 C 0.057 3.943 16 O -0.146 6.146 17 C -0.488 4.488 18 H 0.117 0.883 19 C -0.223 4.223 20 N -0.564 5.564 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.261 4.261 26 C -0.081 4.081 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.154 0.846 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.132 0.868 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.028 12.122 21.652 25.536 hybrid contribution -0.462 0.724 -0.295 0.908 sum -6.490 12.845 21.357 25.754 Atomic orbital electron populations 1.22511 0.96738 1.02071 1.02114 1.20370 0.91360 0.98291 0.86352 0.87368 1.60375 1.57701 1.09250 1.02827 1.21024 0.96154 0.93087 0.88043 0.93705 1.21735 0.97676 0.96346 0.89376 1.58757 1.07439 1.38328 1.33465 1.22336 1.03346 1.01048 0.91520 1.23080 0.91131 1.03559 1.03551 1.22961 1.00793 1.00023 0.96827 1.19626 1.04041 0.92850 0.95857 1.20657 0.96722 0.94585 0.95112 1.20431 1.09115 0.99149 0.94133 1.19888 0.93595 0.92501 0.88324 1.83931 1.74271 1.36731 1.19639 1.21770 1.47492 0.91393 0.88108 0.88315 1.26589 0.96593 0.97789 1.01292 1.70189 1.47331 1.10947 1.27917 0.84660 0.79517 0.77065 0.75018 1.18192 1.19622 1.18134 1.21198 1.10319 0.93375 1.01234 1.20850 0.95884 0.99747 0.91592 0.92430 0.92953 0.91531 0.84365 0.94571 0.92331 0.84713 0.84370 0.87768 0.88650 0.88215 0.88104 0.88383 0.84582 0.87688 0.91973 0.86792 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 9.12 71.98 0.66 -2.84 16 2 C 0.15 3.38 2.25 44.17 0.10 3.47 16 3 H 0.11 2.35 4.59 -2.39 -0.01 2.34 16 4 N -0.67 -14.19 5.46 -473.34 -2.58 -16.77 16 5 C 0.13 2.08 2.52 44.91 0.11 2.19 16 6 H 0.05 0.69 6.87 -2.38 -0.02 0.67 16 7 C 0.08 1.36 6.25 86.30 0.54 1.90 16 8 N -0.85 -15.13 7.71 -186.72 -1.44 -16.57 16 9 C -0.16 -2.33 5.11 -10.79 -0.06 -2.38 16 10 C -0.18 -2.04 10.18 30.59 0.31 -1.73 16 11 C -0.17 -1.90 9.79 30.59 0.30 -1.60 16 12 C -0.12 -3.99 4.96 -19.83 -0.10 -4.08 16 13 C -0.05 -1.89 9.32 22.25 0.21 -1.69 16 14 C -0.21 -9.57 9.99 22.39 0.22 -9.34 16 15 C 0.11 5.62 6.65 22.58 0.15 5.77 16 16 O -0.24 -15.08 9.76 -22.64 -0.22 -15.30 16 17 C -0.41 -24.98 9.49 67.92 0.64 -24.34 16 18 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 19 C -0.03 -1.53 5.49 84.84 0.47 -1.06 16 20 N -0.92 -58.77 13.67 21.61 0.30 -58.47 16 21 Si 1.02 44.30 29.55 68.60 2.03 46.32 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 25 C -0.24 -11.13 9.17 22.39 0.21 -10.92 16 26 C -0.06 -2.26 9.66 22.25 0.21 -2.05 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 29 H 0.07 1.06 7.43 -2.39 -0.02 1.04 16 30 H 0.34 6.78 7.44 -89.70 -0.67 6.11 16 31 H 0.04 0.50 7.47 -2.39 -0.02 0.48 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.34 5.02 7.58 -89.69 -0.68 4.34 16 34 H 0.34 5.45 9.08 -89.70 -0.81 4.63 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.05 8.05 -2.39 -0.02 1.03 16 37 H 0.10 1.05 8.14 -2.38 -0.02 1.04 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.00 7.66 -2.38 -0.02 0.98 16 40 H 0.14 4.06 7.23 -2.91 -0.02 4.04 16 41 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 43 H 0.11 5.33 5.64 -2.91 -0.02 5.31 16 44 H 0.14 4.00 8.03 -2.91 -0.02 3.98 16 Total: -1.00 -73.18 354.90 0.93 -72.25 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -1.13 Total: 37.25 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 3.98 Total: -48.71 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -3.73 Total: -91.82 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.22 Total: -15.30 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -73.18 0.93 -72.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817960350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.453 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds