Wall clock time and date at job start Tue Mar 31 2020 07:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 15 15 C 1.38286 * 119.92679 * 279.72865 * 14 2 1 16 16 C 1.38110 * 120.07333 * 179.72354 * 15 14 2 17 17 C 1.38909 * 119.92456 * 0.54637 * 16 15 14 18 18 N 1.39679 * 120.07506 * 179.74797 * 17 16 15 19 19 C 1.47012 * 111.00031 * 123.61517 * 18 17 16 20 20 C 1.53094 * 109.25990 * 177.61091 * 19 18 17 21 21 O 1.43011 * 109.25966 * 56.84441 * 20 19 18 22 22 C 1.43025 * 113.74146 * 301.33523 * 21 20 19 23 23 C 1.47016 * 110.99743 * 359.97438 * 18 17 16 24 24 C 1.38910 * 119.85055 * 359.72779 * 17 16 15 25 25 C 1.38104 * 119.92864 * 359.97438 * 24 17 16 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 28 28 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 32 32 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.07999 * 119.96286 * 359.97438 * 15 14 2 34 34 H 1.08004 * 120.03381 * 180.27179 * 16 15 14 35 35 H 1.09010 * 109.50427 * 297.54322 * 19 18 17 36 36 H 1.09001 * 109.50931 * 57.66861 * 19 18 17 37 37 H 1.09004 * 109.50540 * 296.91324 * 20 19 18 38 38 H 1.08995 * 109.54785 * 176.80421 * 20 19 18 39 39 H 1.09002 * 109.50274 * 298.73276 * 22 21 20 40 40 H 1.08999 * 109.54213 * 178.62825 * 22 21 20 41 41 H 1.08994 * 109.50883 * 302.32720 * 23 18 17 42 42 H 1.09002 * 109.50168 * 62.45835 * 23 18 17 43 43 H 1.08005 * 120.03796 * 180.02562 * 24 17 16 44 44 H 1.07992 * 119.96601 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5872 -0.5217 3.5561 7 1 2.8369 -1.5696 3.4797 8 6 2.7313 0.1354 4.7596 9 7 3.1723 -0.5141 5.8147 10 14 2.3000 1.9481 4.8915 11 1 0.8707 2.0907 5.2683 12 1 3.1511 2.5852 5.9283 13 1 2.5353 2.6095 3.5829 14 6 2.0323 -0.7104 -1.2304 15 6 2.0714 -2.0924 -1.2614 16 6 2.5259 -2.7467 -2.3896 17 6 2.9547 -2.0149 -3.4896 18 7 3.4199 -2.6734 -4.6302 19 6 2.6586 -2.2671 -5.8204 20 6 3.2385 -2.9652 -7.0534 21 8 3.2115 -4.3806 -6.8504 22 6 3.9438 -4.8114 -5.6999 23 6 3.3710 -4.1320 -4.4532 24 6 2.9195 -0.6267 -3.4529 25 6 2.4581 0.0212 -2.3240 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9173 -1.1205 1.0288 30 1 1.0869 0.6164 2.5525 31 1 2.7587 1.0463 2.1182 32 1 3.2734 -0.0519 6.6615 33 1 1.7423 -2.6607 -0.4040 34 1 2.5520 -3.8262 -2.4148 35 1 1.6135 -2.5520 -5.6987 36 1 2.7296 -1.1868 -5.9467 37 1 4.2673 -2.6390 -7.2061 38 1 2.6425 -2.7118 -7.9300 39 1 4.9930 -4.5389 -5.8133 40 1 3.8577 -5.8931 -5.5969 41 1 3.9621 -4.4129 -3.5816 42 1 2.3374 -4.4467 -4.3097 43 1 3.2518 -0.0547 -4.3066 44 1 2.4308 1.1004 -2.2946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839541265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:40 Heat of formation + Delta-G solvation = -6.127443 kcal Electronic energy + Delta-G solvation = -22740.910880 eV Core-core repulsion = 19465.207876 eV Total energy + Delta-G solvation = -3275.703004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69088 -38.96846 -36.81787 -35.01765 -32.69108 -32.01230 -30.78338 -30.62925 -29.00796 -26.78096 -26.36725 -24.85852 -22.81269 -22.22041 -21.42659 -20.54444 -19.78030 -17.89083 -16.91325 -16.55701 -15.84464 -15.77681 -15.60470 -15.21484 -15.02236 -14.62275 -14.38002 -13.91700 -13.70614 -13.61254 -13.38633 -12.86761 -12.55910 -12.45444 -12.31989 -11.97857 -11.85763 -11.77887 -11.69231 -11.40248 -11.04550 -10.89225 -10.83117 -10.46808 -10.29170 -10.22569 -9.85300 -9.56951 -9.27621 -8.86116 -8.59251 -7.84499 -7.50609 -6.06216 -4.04019 1.37603 1.49005 3.28303 3.29922 3.35505 3.37790 3.48635 3.85483 4.41570 4.43884 4.54372 4.64743 4.74381 4.86323 4.88856 4.95739 5.04943 5.12360 5.14827 5.23152 5.27040 5.36975 5.37885 5.50654 5.53838 5.59279 5.64423 5.81044 5.85436 6.09675 6.12065 6.17769 6.27926 6.43143 6.60947 6.69472 6.72374 6.72858 6.79777 6.87955 7.02440 7.21574 7.61202 7.89789 8.32553 8.64467 9.01831 9.55773 11.07123 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033973 B = 0.002855 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.990860 B = 9804.556332 C =10219.679724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.118 3.882 3 H 0.042 0.958 4 N -0.673 5.673 5 C 0.164 3.836 6 C -0.515 4.515 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.877 3.123 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.268 1.268 14 C -0.098 4.098 15 C -0.071 4.071 16 C -0.169 4.169 17 C 0.096 3.904 18 N -0.488 5.488 19 C 0.020 3.980 20 C 0.062 3.938 21 O -0.385 6.385 22 C 0.063 3.937 23 C 0.013 3.987 24 C -0.140 4.140 25 C -0.093 4.093 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.337 0.663 30 H 0.023 0.977 31 H -0.016 1.016 32 H 0.264 0.736 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 -3.643 -25.812 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.059 0.941 4 N -0.304 5.304 5 C 0.036 3.964 6 C -0.553 4.553 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.704 3.296 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.099 4.099 15 C -0.090 4.090 16 C -0.189 4.189 17 C 0.000 4.000 18 N -0.204 5.204 19 C -0.106 4.106 20 C -0.015 4.015 21 O -0.304 6.304 22 C -0.015 4.015 23 C -0.115 4.115 24 C -0.160 4.160 25 C -0.112 4.112 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.041 0.959 31 H 0.002 0.998 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.171 -3.889 -25.707 26.025 hybrid contribution 0.058 1.561 0.440 1.623 sum -1.113 -2.327 -25.266 25.398 Atomic orbital electron populations 1.21745 0.94365 1.02150 1.00625 1.20448 0.95744 0.95106 0.87891 0.94059 1.60636 1.33162 1.33739 1.02904 1.20045 0.95612 0.91271 0.89433 1.21054 1.43341 0.98650 0.92288 0.90305 1.24905 0.94801 0.97978 0.95659 1.69900 1.46681 1.36515 1.00852 0.86828 0.78723 0.85952 0.78054 1.20135 1.21221 1.19258 1.20082 1.00010 0.94054 0.95750 1.21029 0.96543 0.94054 0.97361 1.21296 1.03109 0.99771 0.94744 1.18838 0.96842 0.93099 0.91234 1.59371 1.51966 1.06450 1.02651 1.22927 0.96194 1.01582 0.89870 1.22709 1.01307 0.80823 0.96627 1.87997 1.73945 1.22289 1.46150 1.22726 0.95550 0.99276 0.83899 1.22971 1.01611 0.86839 1.00041 1.20624 1.03877 0.92317 0.99154 1.20916 0.98022 0.99627 0.92662 0.92338 0.93505 0.92148 0.84448 0.95901 0.99842 0.92657 0.84637 0.85829 0.92995 0.88994 0.92081 0.88109 0.92070 0.87989 0.88664 0.92631 0.86225 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.39 37.15 0.35 -1.69 16 2 C 0.12 2.00 2.82 -68.87 -0.19 1.81 16 3 H 0.04 0.72 7.66 -51.93 -0.40 0.32 16 4 N -0.67 -13.84 5.67 -109.22 -0.62 -14.46 16 5 C 0.16 3.99 4.31 -4.97 -0.02 3.97 16 6 C -0.52 -14.78 9.87 -34.44 -0.34 -15.12 16 7 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 10 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 14 C -0.10 -1.45 4.72 -104.59 -0.49 -1.94 16 15 C -0.07 -1.02 8.99 -39.61 -0.36 -1.37 16 16 C -0.17 -2.14 8.82 -39.38 -0.35 -2.48 16 17 C 0.10 1.17 5.63 -83.79 -0.47 0.70 16 18 N -0.49 -5.08 4.77 -170.81 -0.82 -5.89 16 19 C 0.02 0.17 5.41 -3.71 -0.02 0.15 16 20 C 0.06 0.47 7.01 37.21 0.26 0.73 16 21 O -0.39 -3.65 10.83 -35.23 -0.38 -4.03 16 22 C 0.06 0.49 7.01 37.20 0.26 0.75 16 23 C 0.01 0.11 4.33 -3.71 -0.02 0.10 16 24 C -0.14 -1.68 9.20 -39.38 -0.36 -2.04 16 25 C -0.09 -1.22 9.66 -39.61 -0.38 -1.60 16 26 H 0.06 0.97 7.45 -51.93 -0.39 0.58 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.34 6.91 7.97 -39.29 -0.31 6.59 16 30 H 0.02 0.56 6.86 -51.93 -0.36 0.21 16 31 H -0.02 -0.40 7.11 -51.93 -0.37 -0.76 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.14 2.03 7.70 -52.49 -0.40 1.62 16 34 H 0.12 1.35 5.81 -52.48 -0.31 1.05 16 35 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.09 0.70 6.86 -51.93 -0.36 0.34 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.82 7.23 -51.93 -0.38 0.45 16 42 H 0.06 0.52 7.54 -51.93 -0.39 0.13 16 43 H 0.12 1.21 7.20 -52.48 -0.38 0.83 16 44 H 0.12 1.41 8.03 -52.49 -0.42 0.99 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -31.69 346.88 -9.72 -41.41 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.00 Total: 3.90 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.23 Total: -16.15 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.66 Total: -47.37 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.38 Total: -4.03 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.69 -9.72 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839541265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.287 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds