Wall clock time and date at job start Tue Mar 31 2020 07:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 15 15 C 1.38286 * 119.92679 * 279.72865 * 14 2 1 16 16 C 1.38110 * 120.07333 * 179.72354 * 15 14 2 17 17 C 1.38909 * 119.92456 * 0.54637 * 16 15 14 18 18 N 1.39679 * 120.07506 * 179.74797 * 17 16 15 19 19 C 1.47012 * 111.00031 * 123.61517 * 18 17 16 20 20 C 1.53094 * 109.25990 * 177.61091 * 19 18 17 21 21 O 1.43011 * 109.25966 * 56.84441 * 20 19 18 22 22 C 1.43025 * 113.74146 * 301.33523 * 21 20 19 23 23 C 1.47016 * 110.99743 * 359.97438 * 18 17 16 24 24 C 1.38910 * 119.85055 * 359.72779 * 17 16 15 25 25 C 1.38104 * 119.92864 * 359.97438 * 24 17 16 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 28 28 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 32 32 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.07999 * 119.96286 * 359.97438 * 15 14 2 34 34 H 1.08004 * 120.03381 * 180.27179 * 16 15 14 35 35 H 1.09010 * 109.50427 * 297.54322 * 19 18 17 36 36 H 1.09001 * 109.50931 * 57.66861 * 19 18 17 37 37 H 1.09004 * 109.50540 * 296.91324 * 20 19 18 38 38 H 1.08995 * 109.54785 * 176.80421 * 20 19 18 39 39 H 1.09002 * 109.50274 * 298.73276 * 22 21 20 40 40 H 1.08999 * 109.54213 * 178.62825 * 22 21 20 41 41 H 1.08994 * 109.50883 * 302.32720 * 23 18 17 42 42 H 1.09002 * 109.50168 * 62.45835 * 23 18 17 43 43 H 1.08005 * 120.03796 * 180.02562 * 24 17 16 44 44 H 1.07992 * 119.96601 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5872 -0.5217 3.5561 7 1 2.8369 -1.5696 3.4797 8 6 2.7313 0.1354 4.7596 9 7 3.1723 -0.5141 5.8147 10 14 2.3000 1.9481 4.8915 11 1 0.8707 2.0907 5.2683 12 1 3.1511 2.5852 5.9283 13 1 2.5353 2.6095 3.5829 14 6 2.0323 -0.7104 -1.2304 15 6 2.0714 -2.0924 -1.2614 16 6 2.5259 -2.7467 -2.3896 17 6 2.9547 -2.0149 -3.4896 18 7 3.4199 -2.6734 -4.6302 19 6 2.6586 -2.2671 -5.8204 20 6 3.2385 -2.9652 -7.0534 21 8 3.2115 -4.3806 -6.8504 22 6 3.9438 -4.8114 -5.6999 23 6 3.3710 -4.1320 -4.4532 24 6 2.9195 -0.6267 -3.4529 25 6 2.4581 0.0212 -2.3240 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9173 -1.1205 1.0288 30 1 1.0869 0.6164 2.5525 31 1 2.7587 1.0463 2.1182 32 1 3.2734 -0.0519 6.6615 33 1 1.7423 -2.6607 -0.4040 34 1 2.5520 -3.8262 -2.4148 35 1 1.6135 -2.5520 -5.6987 36 1 2.7296 -1.1868 -5.9467 37 1 4.2673 -2.6390 -7.2061 38 1 2.6425 -2.7118 -7.9300 39 1 4.9930 -4.5389 -5.8133 40 1 3.8577 -5.8931 -5.5969 41 1 3.9621 -4.4129 -3.5816 42 1 2.3374 -4.4467 -4.3097 43 1 3.2518 -0.0547 -4.3066 44 1 2.4308 1.1004 -2.2946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839541265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:39 Heat of formation + Delta-G solvation = -27.913245 kcal Electronic energy + Delta-G solvation = -22741.855583 eV Core-core repulsion = 19465.207876 eV Total energy + Delta-G solvation = -3276.647708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52431 -39.89564 -37.96570 -36.22356 -34.70033 -32.75211 -32.32034 -31.52881 -30.08466 -28.47765 -27.42573 -25.59314 -24.13589 -23.26667 -22.80268 -21.62628 -20.90511 -19.09298 -18.61282 -17.29981 -17.14542 -16.73395 -16.35712 -16.23128 -16.13697 -15.73783 -15.59391 -15.40195 -14.92629 -14.77333 -14.50786 -14.33620 -14.06874 -13.61140 -13.42968 -13.22864 -13.11577 -12.83266 -12.71211 -12.56802 -12.42489 -12.24225 -11.86896 -11.80956 -11.64764 -11.58991 -11.47079 -10.98503 -10.81483 -10.40008 -9.86473 -9.17295 -8.78964 -8.31073 -6.35498 0.36402 0.48291 1.34122 1.35605 1.46693 2.33126 2.50602 2.84499 2.91614 3.03042 3.45639 3.78010 3.82713 3.83075 3.95015 4.03274 4.12056 4.19996 4.25088 4.38066 4.48445 4.51210 4.53974 4.59233 4.67158 4.71386 4.74923 4.77522 4.88892 4.91226 4.96111 4.98798 5.05878 5.14905 5.25798 5.32480 5.38857 5.53830 5.70492 5.75877 5.92193 5.99964 6.11590 6.26706 6.54969 6.64925 6.74988 7.29430 8.85755 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033973 B = 0.002855 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.990860 B = 9804.556332 C =10219.679724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.119 3.881 3 H 0.042 0.958 4 N -0.679 5.679 5 C 0.177 3.823 6 C -0.528 4.528 7 H 0.036 0.964 8 C 0.008 3.992 9 N -0.948 5.948 10 Si 0.951 3.049 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.251 1.251 14 C -0.115 4.115 15 C -0.083 4.083 16 C -0.174 4.174 17 C 0.099 3.901 18 N -0.493 5.493 19 C 0.020 3.980 20 C 0.062 3.938 21 O -0.403 6.403 22 C 0.064 3.936 23 C 0.011 3.989 24 C -0.139 4.139 25 C -0.093 4.093 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.335 0.665 30 H 0.026 0.974 31 H -0.015 1.015 32 H 0.268 0.732 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.044 0.956 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.143 0.857 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -2.037 -28.333 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 H 0.060 0.940 4 N -0.310 5.310 5 C 0.048 3.952 6 C -0.566 4.566 7 H 0.055 0.945 8 C -0.190 4.190 9 N -0.588 5.588 10 Si 0.774 3.226 11 H -0.189 1.189 12 H -0.206 1.206 13 H -0.174 1.174 14 C -0.116 4.116 15 C -0.102 4.102 16 C -0.195 4.195 17 C 0.002 3.998 18 N -0.209 5.209 19 C -0.105 4.105 20 C -0.015 4.015 21 O -0.322 6.322 22 C -0.013 4.013 23 C -0.116 4.116 24 C -0.159 4.159 25 C -0.112 4.112 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.044 0.956 31 H 0.002 0.998 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.161 0.839 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.421 -2.297 -28.264 28.393 hybrid contribution 0.182 0.920 1.130 1.468 sum -1.238 -1.377 -27.134 27.198 Atomic orbital electron populations 1.21718 0.93411 1.02020 1.01310 1.20490 0.96452 0.94906 0.87166 0.93989 1.60546 1.33077 1.33611 1.03790 1.19775 0.95166 0.91131 0.89111 1.21335 1.43469 0.97276 0.94512 0.94532 1.25887 0.94514 1.03546 0.95048 1.70055 1.48127 1.38950 1.01682 0.85658 0.78897 0.79194 0.78844 1.18943 1.20602 1.17444 1.19916 1.01900 0.94135 0.95650 1.20950 0.97547 0.94098 0.97581 1.21419 1.03033 1.00532 0.94511 1.19034 0.95688 0.93466 0.91588 1.59407 1.51868 1.07096 1.02558 1.23013 0.95549 1.02546 0.89430 1.22852 1.01982 0.79875 0.96766 1.87979 1.74248 1.23366 1.46568 1.22810 0.95406 1.00171 0.82899 1.23027 1.01503 0.86234 1.00860 1.20872 1.03124 0.92397 0.99473 1.21078 0.97389 1.00432 0.92265 0.93558 0.90808 0.92713 0.84776 0.95576 0.99773 0.92339 0.86257 0.84666 0.93782 0.87686 0.91567 0.86091 0.91749 0.86318 0.88571 0.93065 0.83916 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.39 71.98 0.68 -3.14 16 2 C 0.12 3.95 2.82 44.16 0.12 4.08 16 3 H 0.04 1.39 7.66 -2.39 -0.02 1.38 16 4 N -0.68 -28.32 5.67 -499.45 -2.83 -31.15 16 5 C 0.18 8.59 4.31 85.56 0.37 8.96 16 6 C -0.53 -31.15 9.87 25.60 0.25 -30.90 16 7 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 8 C 0.01 0.44 5.47 84.66 0.46 0.91 16 9 N -0.95 -59.96 13.96 21.45 0.30 -59.67 16 10 Si 0.95 44.50 27.47 68.60 1.88 46.39 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 14 C -0.11 -3.31 4.72 -19.84 -0.09 -3.40 16 15 C -0.08 -2.38 8.99 22.25 0.20 -2.18 16 16 C -0.17 -4.30 8.82 22.40 0.20 -4.10 16 17 C 0.10 2.24 5.63 38.21 0.22 2.45 16 18 N -0.49 -9.27 4.77 -694.32 -3.31 -12.58 16 19 C 0.02 0.30 5.41 86.31 0.47 0.77 16 20 C 0.06 0.78 7.01 72.01 0.50 1.29 16 21 O -0.40 -6.81 10.83 -148.98 -1.61 -8.42 16 22 C 0.06 0.89 7.01 72.01 0.50 1.40 16 23 C 0.01 0.18 4.33 86.31 0.37 0.55 16 24 C -0.14 -2.98 9.20 22.40 0.21 -2.78 16 25 C -0.09 -2.24 9.66 22.25 0.21 -2.02 16 26 H 0.05 1.48 7.45 -2.39 -0.02 1.46 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.33 14.13 7.97 -89.69 -0.71 13.42 16 30 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 31 H -0.02 -0.74 7.11 -2.39 -0.02 -0.76 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.12 3.74 7.70 -2.91 -0.02 3.72 16 34 H 0.14 2.90 5.81 -2.91 -0.02 2.88 16 35 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.10 1.27 6.86 -2.39 -0.02 1.25 16 37 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.55 7.23 -2.39 -0.02 1.53 16 42 H 0.05 0.90 7.54 -2.39 -0.02 0.88 16 43 H 0.14 2.38 7.20 -2.91 -0.02 2.36 16 44 H 0.14 2.80 8.03 -2.91 -0.02 2.78 16 Total: -1.00 -68.99 346.88 -0.69 -69.68 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.21 Total: 23.88 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 4.67 Total: -28.12 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -5.85 Total: -103.40 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -1.61 Total: -8.42 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Total: -68.99 -0.69 -69.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839541265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.766 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds