Wall clock time and date at job start Tue Mar 31 2020 07:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46833 * 2 1 4 4 N 1.46896 * 109.47341 * 240.00074 * 2 1 3 5 5 C 1.46899 * 110.99974 * 84.99845 * 4 2 1 6 6 C 1.50701 * 109.47186 * 179.97438 * 5 4 2 7 7 H 1.07995 * 119.99966 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00125 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99709 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99970 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47168 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47085 * 119.99700 * 10 8 6 13 13 H 1.48499 * 109.47088 * 239.99586 * 10 8 6 14 14 C 1.50699 * 109.47300 * 119.99481 * 2 1 3 15 15 C 1.38281 * 119.93134 * 260.00279 * 14 2 1 16 16 C 1.38098 * 120.07695 * 179.97438 * 15 14 2 17 17 C 1.38907 * 119.92589 * 0.02562 * 16 15 14 18 18 N 1.39681 * 120.07816 * 179.97438 * 17 16 15 19 19 C 1.47024 * 110.99173 * 56.32196 * 18 17 16 20 20 C 1.53103 * 109.24985 * 182.35279 * 19 18 17 21 21 O 1.43012 * 109.29295 * 303.21723 * 20 19 18 22 22 C 1.43011 * 113.74271 * 58.65008 * 21 20 19 23 23 C 1.47018 * 111.00027 * 179.97438 * 18 17 16 24 24 C 1.38914 * 119.84933 * 0.25516 * 17 16 15 25 25 C 1.38105 * 119.92373 * 359.48797 * 24 17 16 26 26 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47493 * 300.00062 * 1 2 3 28 28 H 1.09002 * 109.47229 * 59.99890 * 1 2 3 29 29 H 1.00899 * 111.00136 * 208.94680 * 4 2 1 30 30 H 1.08997 * 109.47599 * 300.00234 * 5 4 2 31 31 H 1.09005 * 109.47023 * 60.00115 * 5 4 2 32 32 H 0.97004 * 119.99188 * 180.02562 * 9 8 6 33 33 H 1.08003 * 119.96116 * 359.96052 * 15 14 2 34 34 H 1.07999 * 120.03927 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.47369 * 62.44004 * 19 18 17 36 36 H 1.08998 * 109.54483 * 302.30212 * 19 18 17 37 37 H 1.09002 * 109.50635 * 183.25881 * 20 19 18 38 38 H 1.09003 * 109.50698 * 63.17493 * 20 19 18 39 39 H 1.08997 * 109.50806 * 61.26171 * 22 21 20 40 40 H 1.08997 * 109.50924 * 181.35636 * 22 21 20 41 41 H 1.08994 * 109.50209 * 57.67329 * 23 18 17 42 42 H 1.08997 * 109.50514 * 297.54143 * 23 18 17 43 43 H 1.08010 * 120.03742 * 179.73017 * 24 17 16 44 44 H 1.08003 * 119.96244 * 180.25591 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5886 -0.5214 -3.5557 7 1 2.8390 -1.5691 -3.4791 8 6 2.7329 0.1357 -4.7592 9 7 2.4285 1.4117 -4.8523 10 14 3.3596 -0.7868 -6.2578 11 1 3.6282 -2.2008 -5.8920 12 1 2.3358 -0.7388 -7.3325 13 1 4.6135 -0.1540 -6.7400 14 6 2.0323 -0.7103 1.2305 15 6 2.4585 0.0213 2.3238 16 6 2.9189 -0.6265 3.4532 17 6 2.9542 -2.0146 3.4899 18 7 3.4198 -2.6731 4.6304 19 6 2.6594 -2.2660 5.8210 20 6 3.2392 -2.9649 7.0537 21 8 3.2122 -4.3803 6.8507 22 6 3.9440 -4.8111 5.7001 23 6 3.3702 -4.1318 4.4537 24 6 2.5309 -2.7464 2.3877 25 6 2.0666 -2.0923 1.2635 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 2.9174 -1.1203 -1.0287 30 1 1.0871 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1181 32 1 2.5297 1.8739 -5.6991 33 1 2.4314 1.1006 2.2944 34 1 3.2512 -0.0545 4.3069 35 1 1.6142 -2.5502 5.6994 36 1 2.7312 -1.1858 5.9477 37 1 2.6428 -2.7113 7.9301 38 1 4.2680 -2.6387 7.2068 39 1 4.9933 -4.5385 5.8130 40 1 3.8579 -5.8928 5.5979 41 1 3.9606 -4.4130 3.5818 42 1 2.3364 -4.4461 4.3109 43 1 2.5611 -3.8259 2.4114 44 1 1.7334 -2.6608 0.4077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839541266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:43 Heat of formation + Delta-G solvation = -10.597188 kcal Electronic energy + Delta-G solvation = -22693.553128 eV Core-core repulsion = 19417.656301 eV Total energy + Delta-G solvation = -3275.896827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65621 -38.91707 -36.72624 -34.91554 -32.73788 -31.98838 -30.61405 -30.49647 -28.86641 -26.62120 -26.00292 -24.83468 -22.86838 -22.18235 -21.63977 -20.56951 -19.66429 -17.85346 -16.65763 -16.52240 -15.78681 -15.62862 -15.54223 -15.14173 -14.92150 -14.60811 -14.47910 -14.00132 -13.60308 -13.50420 -13.22324 -12.75541 -12.50113 -12.31197 -12.16855 -11.94896 -11.77151 -11.58774 -11.44543 -11.22783 -11.01905 -10.85199 -10.81548 -10.57196 -10.28054 -10.22282 -9.85974 -9.55836 -9.14369 -8.81327 -8.48518 -7.79256 -7.31375 -6.03223 -4.04826 1.43110 1.53862 3.30996 3.32650 3.38197 3.43299 3.50452 3.90633 4.43237 4.45810 4.56621 4.67007 4.76047 4.90737 4.96665 5.00005 5.12744 5.16844 5.24028 5.26504 5.33138 5.39292 5.39700 5.54054 5.59410 5.64041 5.73018 5.90712 5.98225 6.16432 6.18076 6.27408 6.39290 6.52985 6.71233 6.72877 6.76603 6.82663 6.89658 7.26275 7.28744 7.42942 7.79716 8.13605 8.40398 8.61273 9.04790 9.60068 11.07993 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002821 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.550696 B = 9924.781555 C =10507.770613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.120 3.880 3 H 0.042 0.958 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.512 4.512 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C -0.095 4.095 15 C -0.093 4.093 16 C -0.139 4.139 17 C 0.094 3.906 18 N -0.488 5.488 19 C 0.020 3.980 20 C 0.062 3.938 21 O -0.386 6.386 22 C 0.063 3.937 23 C 0.013 3.987 24 C -0.169 4.169 25 C -0.072 4.072 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.330 0.670 30 H 0.029 0.971 31 H -0.014 1.014 32 H 0.261 0.739 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.123 0.877 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -7.978 23.303 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.010 3.990 3 H 0.060 0.940 4 N -0.314 5.314 5 C 0.067 3.933 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.096 4.096 15 C -0.113 4.113 16 C -0.160 4.160 17 C -0.002 4.002 18 N -0.204 5.204 19 C -0.106 4.106 20 C -0.015 4.015 21 O -0.304 6.304 22 C -0.014 4.014 23 C -0.114 4.114 24 C -0.190 4.190 25 C -0.091 4.091 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.047 0.953 31 H 0.004 0.996 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.476 -8.099 23.263 24.637 hybrid contribution 0.581 0.267 -1.086 1.260 sum 1.057 -7.833 22.177 23.543 Atomic orbital electron populations 1.21729 0.94479 1.01851 1.00679 1.20415 0.95642 0.95178 0.87787 0.94020 1.60826 1.32511 1.34590 1.03432 1.19605 0.96524 0.90223 0.86926 1.21222 1.43086 0.96768 0.94028 0.91940 1.24992 0.95698 0.94900 0.99029 1.69977 1.48972 1.09024 1.25796 0.86438 0.78359 0.79976 0.82615 1.19654 1.21003 1.21113 1.20147 0.99609 0.94020 0.95835 1.20937 0.97988 0.99708 0.92629 1.20624 1.03881 0.92294 0.99163 1.18827 0.97092 0.93105 0.91182 1.59376 1.52029 1.06373 1.02663 1.22927 0.96200 1.01592 0.89856 1.22712 1.01303 0.80797 0.96654 1.87993 1.73962 1.22313 1.46127 1.22724 0.95549 0.99240 0.83930 1.22964 1.01564 0.86913 0.99987 1.21275 1.03227 0.99667 0.94816 1.21015 0.96660 0.94107 0.97334 0.92446 0.93686 0.92144 0.85256 0.95256 0.99626 0.92986 0.86061 0.86258 0.93013 0.88968 0.88117 0.92086 0.92086 0.88036 0.88721 0.92662 0.85936 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.39 37.16 0.35 -1.81 16 2 C 0.12 2.15 2.81 -68.87 -0.19 1.96 16 3 H 0.04 0.79 7.66 -51.93 -0.40 0.39 16 4 N -0.68 -14.58 5.68 -109.22 -0.62 -15.20 16 5 C 0.19 5.08 5.24 -4.98 -0.03 5.06 16 6 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 10 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C -0.09 -1.47 4.72 -104.59 -0.49 -1.96 16 15 C -0.09 -1.29 9.66 -39.62 -0.38 -1.67 16 16 C -0.14 -1.74 9.20 -39.38 -0.36 -2.10 16 17 C 0.09 1.18 5.64 -83.78 -0.47 0.70 16 18 N -0.49 -5.19 4.77 -170.79 -0.82 -6.01 16 19 C 0.02 0.18 5.41 -3.70 -0.02 0.16 16 20 C 0.06 0.48 7.01 37.21 0.26 0.74 16 21 O -0.39 -3.70 10.83 -35.23 -0.38 -4.08 16 22 C 0.06 0.50 7.01 37.21 0.26 0.76 16 23 C 0.01 0.12 4.33 -3.71 -0.02 0.10 16 24 C -0.17 -2.19 8.82 -39.38 -0.35 -2.54 16 25 C -0.07 -1.06 8.99 -39.61 -0.36 -1.42 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.10 7.45 -51.93 -0.39 0.71 16 29 H 0.33 6.93 7.98 -39.29 -0.31 6.62 16 30 H 0.03 0.82 7.44 -51.93 -0.39 0.44 16 31 H -0.01 -0.39 8.06 -51.93 -0.42 -0.81 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.12 1.51 8.03 -52.48 -0.42 1.09 16 34 H 0.12 1.26 7.20 -52.49 -0.38 0.88 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.73 6.86 -51.93 -0.36 0.37 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.83 7.21 -51.93 -0.37 0.45 16 42 H 0.06 0.52 7.55 -51.93 -0.39 0.13 16 43 H 0.12 1.36 5.81 -52.48 -0.31 1.06 16 44 H 0.13 2.05 7.71 -52.48 -0.40 1.64 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -31.14 350.50 -10.08 -41.22 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.04 Total: 3.66 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.22 Total: -15.42 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.70 Total: -47.42 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.38 Total: -4.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.14 -10.08 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839541266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.622 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds