Wall clock time and date at job start Tue Mar 31 2020 07:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46833 * 2 1 4 4 N 1.46896 * 109.47341 * 240.00074 * 2 1 3 5 5 C 1.46899 * 110.99974 * 84.99845 * 4 2 1 6 6 C 1.50701 * 109.47186 * 179.97438 * 5 4 2 7 7 H 1.07995 * 119.99966 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00125 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99709 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99970 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47168 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47085 * 119.99700 * 10 8 6 13 13 H 1.48499 * 109.47088 * 239.99586 * 10 8 6 14 14 C 1.50699 * 109.47300 * 119.99481 * 2 1 3 15 15 C 1.38281 * 119.93134 * 260.00279 * 14 2 1 16 16 C 1.38098 * 120.07695 * 179.97438 * 15 14 2 17 17 C 1.38907 * 119.92589 * 0.02562 * 16 15 14 18 18 N 1.39681 * 120.07816 * 179.97438 * 17 16 15 19 19 C 1.47024 * 110.99173 * 56.32196 * 18 17 16 20 20 C 1.53103 * 109.24985 * 182.35279 * 19 18 17 21 21 O 1.43012 * 109.29295 * 303.21723 * 20 19 18 22 22 C 1.43011 * 113.74271 * 58.65008 * 21 20 19 23 23 C 1.47018 * 111.00027 * 179.97438 * 18 17 16 24 24 C 1.38914 * 119.84933 * 0.25516 * 17 16 15 25 25 C 1.38105 * 119.92373 * 359.48797 * 24 17 16 26 26 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47493 * 300.00062 * 1 2 3 28 28 H 1.09002 * 109.47229 * 59.99890 * 1 2 3 29 29 H 1.00899 * 111.00136 * 208.94680 * 4 2 1 30 30 H 1.08997 * 109.47599 * 300.00234 * 5 4 2 31 31 H 1.09005 * 109.47023 * 60.00115 * 5 4 2 32 32 H 0.97004 * 119.99188 * 180.02562 * 9 8 6 33 33 H 1.08003 * 119.96116 * 359.96052 * 15 14 2 34 34 H 1.07999 * 120.03927 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.47369 * 62.44004 * 19 18 17 36 36 H 1.08998 * 109.54483 * 302.30212 * 19 18 17 37 37 H 1.09002 * 109.50635 * 183.25881 * 20 19 18 38 38 H 1.09003 * 109.50698 * 63.17493 * 20 19 18 39 39 H 1.08997 * 109.50806 * 61.26171 * 22 21 20 40 40 H 1.08997 * 109.50924 * 181.35636 * 22 21 20 41 41 H 1.08994 * 109.50209 * 57.67329 * 23 18 17 42 42 H 1.08997 * 109.50514 * 297.54143 * 23 18 17 43 43 H 1.08010 * 120.03742 * 179.73017 * 24 17 16 44 44 H 1.08003 * 119.96244 * 180.25591 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5886 -0.5214 -3.5557 7 1 2.8390 -1.5691 -3.4791 8 6 2.7329 0.1357 -4.7592 9 7 2.4285 1.4117 -4.8523 10 14 3.3596 -0.7868 -6.2578 11 1 3.6282 -2.2008 -5.8920 12 1 2.3358 -0.7388 -7.3325 13 1 4.6135 -0.1540 -6.7400 14 6 2.0323 -0.7103 1.2305 15 6 2.4585 0.0213 2.3238 16 6 2.9189 -0.6265 3.4532 17 6 2.9542 -2.0146 3.4899 18 7 3.4198 -2.6731 4.6304 19 6 2.6594 -2.2660 5.8210 20 6 3.2392 -2.9649 7.0537 21 8 3.2122 -4.3803 6.8507 22 6 3.9440 -4.8111 5.7001 23 6 3.3702 -4.1318 4.4537 24 6 2.5309 -2.7464 2.3877 25 6 2.0666 -2.0923 1.2635 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 2.9174 -1.1203 -1.0287 30 1 1.0871 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1181 32 1 2.5297 1.8739 -5.6991 33 1 2.4314 1.1006 2.2944 34 1 3.2512 -0.0545 4.3069 35 1 1.6142 -2.5502 5.6994 36 1 2.7312 -1.1858 5.9477 37 1 2.6428 -2.7113 7.9301 38 1 4.2680 -2.6387 7.2068 39 1 4.9933 -4.5385 5.8130 40 1 3.8579 -5.8928 5.5979 41 1 3.9606 -4.4130 3.5818 42 1 2.3364 -4.4461 4.3109 43 1 2.5611 -3.8259 2.4114 44 1 1.7334 -2.6608 0.4077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839541266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:43 Heat of formation + Delta-G solvation = -31.175111 kcal Electronic energy + Delta-G solvation = -22694.445453 eV Core-core repulsion = 19417.656301 eV Total energy + Delta-G solvation = -3276.789153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51756 -39.88502 -37.92938 -36.20767 -34.71962 -32.74650 -32.07404 -31.52249 -30.02846 -28.14241 -27.40286 -25.58884 -24.42042 -23.32542 -22.90456 -21.61753 -20.87817 -18.89145 -18.46628 -17.28022 -17.00704 -16.77323 -16.39397 -16.34778 -16.14620 -15.75641 -15.57596 -15.19909 -14.96653 -14.66681 -14.36151 -14.30558 -13.97633 -13.49922 -13.37015 -13.20718 -13.05064 -12.83917 -12.70361 -12.58979 -12.43854 -12.34311 -12.10582 -11.79162 -11.63875 -11.57976 -11.28301 -10.97359 -10.67366 -10.39544 -9.86319 -9.14926 -8.78147 -8.23274 -6.34253 0.36738 0.48533 1.40459 1.41016 1.55063 2.39332 2.51087 2.85205 2.92482 3.10132 3.52608 3.78999 3.83812 3.84107 3.95726 4.03831 4.12933 4.20932 4.26001 4.38461 4.49355 4.52161 4.55937 4.59658 4.67944 4.71812 4.75845 4.84752 4.91276 4.95608 4.98833 5.09613 5.17232 5.20876 5.26552 5.33961 5.40901 5.59558 5.75152 5.77144 5.92858 6.03939 6.12421 6.26829 6.45939 6.71377 6.88197 7.36677 8.88612 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002821 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.550696 B = 9924.781555 C =10507.770613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.121 3.879 3 H 0.028 0.972 4 N -0.677 5.677 5 C 0.211 3.789 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.973 3.027 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.278 1.278 14 C -0.113 4.113 15 C -0.096 4.096 16 C -0.138 4.138 17 C 0.100 3.900 18 N -0.493 5.493 19 C 0.020 3.980 20 C 0.062 3.938 21 O -0.403 6.403 22 C 0.064 3.936 23 C 0.011 3.989 24 C -0.172 4.172 25 C -0.080 4.080 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.333 0.667 30 H 0.003 0.997 31 H -0.043 1.043 32 H 0.265 0.735 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.139 0.861 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.453 -9.314 24.775 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.011 3.989 3 H 0.046 0.954 4 N -0.308 5.308 5 C 0.083 3.917 6 C -0.572 4.572 7 H 0.082 0.918 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.798 3.202 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.158 4.158 17 C 0.003 3.997 18 N -0.209 5.209 19 C -0.106 4.106 20 C -0.014 4.014 21 O -0.322 6.322 22 C -0.013 4.013 23 C -0.116 4.116 24 C -0.192 4.192 25 C -0.099 4.099 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.150 0.850 30 H 0.021 0.979 31 H -0.025 1.025 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.160 0.840 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.157 0.843 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.228 -9.450 24.769 26.539 hybrid contribution 0.356 0.675 -1.406 1.600 sum 1.584 -8.774 23.363 25.007 Atomic orbital electron populations 1.21674 0.93608 1.01989 1.00819 1.20422 0.96331 0.94487 0.87679 0.95358 1.60714 1.32545 1.33727 1.03792 1.19226 0.94022 0.89942 0.88516 1.21572 1.43489 0.97025 0.95136 0.91787 1.25961 0.95627 0.95772 1.02402 1.70103 1.49771 1.10710 1.26897 0.85277 0.77863 0.78873 0.78232 1.18630 1.20328 1.20318 1.19893 1.01858 0.94342 0.95351 1.21055 0.97676 1.00265 0.92488 1.20842 1.03156 0.92550 0.99288 1.19023 0.95728 0.93329 0.91659 1.59400 1.51884 1.07168 1.02477 1.23012 0.95594 1.02489 0.89478 1.22844 1.01958 0.79901 0.96725 1.87977 1.74276 1.23301 1.46598 1.22819 0.95401 1.00196 0.82891 1.23040 1.01571 0.86105 1.00912 1.21425 1.02836 1.00605 0.94359 1.20949 0.97442 0.93772 0.97779 0.92251 0.91030 0.94427 0.85010 0.97863 1.02518 0.92618 0.85107 0.84016 0.93757 0.87830 0.86140 0.91577 0.91764 0.86244 0.88396 0.92985 0.84285 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 9.39 71.98 0.68 -3.51 16 2 C 0.12 4.45 2.81 44.17 0.12 4.58 16 3 H 0.03 1.12 7.66 -2.38 -0.02 1.10 16 4 N -0.68 -29.92 5.68 -499.47 -2.84 -32.76 16 5 C 0.21 11.55 5.24 85.56 0.45 11.99 16 6 C -0.53 -31.00 9.32 25.60 0.24 -30.76 16 7 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 8 C 0.00 0.02 5.46 84.66 0.46 0.49 16 9 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 10 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 14 C -0.11 -3.49 4.72 -19.84 -0.09 -3.58 16 15 C -0.10 -2.53 9.66 22.25 0.21 -2.32 16 16 C -0.14 -3.16 9.20 22.40 0.21 -2.96 16 17 C 0.10 2.29 5.64 38.21 0.22 2.51 16 18 N -0.49 -9.36 4.77 -694.26 -3.31 -12.67 16 19 C 0.02 0.30 5.41 86.31 0.47 0.77 16 20 C 0.06 0.80 7.01 72.02 0.50 1.31 16 21 O -0.40 -6.79 10.83 -148.98 -1.61 -8.41 16 22 C 0.06 0.87 7.01 72.02 0.50 1.38 16 23 C 0.01 0.17 4.33 86.31 0.37 0.55 16 24 C -0.17 -4.22 8.82 22.40 0.20 -4.02 16 25 C -0.08 -2.34 8.99 22.25 0.20 -2.14 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.42 7.45 -2.39 -0.02 1.40 16 29 H 0.33 14.35 7.98 -89.69 -0.72 13.64 16 30 H 0.00 0.19 7.44 -2.39 -0.02 0.18 16 31 H -0.04 -2.54 8.06 -2.38 -0.02 -2.56 16 32 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.13 3.13 8.03 -2.91 -0.02 3.11 16 34 H 0.14 2.57 7.20 -2.91 -0.02 2.55 16 35 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.10 1.33 6.86 -2.39 -0.02 1.31 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.51 7.21 -2.39 -0.02 1.49 16 42 H 0.05 0.89 7.55 -2.39 -0.02 0.87 16 43 H 0.14 2.87 5.81 -2.91 -0.02 2.86 16 44 H 0.12 3.80 7.71 -2.91 -0.02 3.78 16 Total: -1.00 -67.34 350.50 -0.44 -67.78 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.27 Total: 21.86 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.74 Total: -25.72 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -5.86 Total: -102.35 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -1.61 Total: -8.41 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.34 -0.44 -67.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839541266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.606 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds