Wall clock time and date at job start Tue Mar 31 2020 08:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21291 * 120.00259 * 2 1 4 4 N 1.34776 * 119.99902 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00017 * 5.25101 * 4 2 1 6 6 C 1.40145 * 119.99910 * 185.24550 * 4 2 1 7 7 C 1.38857 * 119.99716 * 172.71618 * 6 4 2 8 8 C 1.38062 * 120.00452 * 179.97438 * 7 6 4 9 9 C 1.38879 * 119.99800 * 0.02562 * 8 7 6 10 10 N 1.39890 * 120.00727 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00246 * 179.97438 * 10 9 8 12 12 C 1.53008 * 109.47199 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.46470 * 305.00116 * 12 11 10 14 14 C 1.53003 * 109.47136 * 64.99893 * 12 11 10 15 15 C 1.52996 * 109.47352 * 185.00086 * 12 11 10 16 16 C 1.50691 * 109.47389 * 174.99665 * 15 12 11 17 17 H 1.07997 * 119.99993 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00313 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99740 * 359.72364 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46743 * 179.72429 * 20 18 16 22 22 H 1.48495 * 109.47154 * 299.72153 * 20 18 16 23 23 H 1.48500 * 109.47106 * 59.72643 * 20 18 16 24 24 C 1.38895 * 119.99152 * 0.25270 * 9 8 7 25 25 C 1.38065 * 119.99253 * 359.48974 * 24 9 8 26 26 H 1.08999 * 109.47025 * 175.17689 * 1 2 3 27 27 H 1.09004 * 109.47263 * 295.17937 * 1 2 3 28 28 H 1.09005 * 109.46965 * 55.17690 * 1 2 3 29 29 H 1.09002 * 109.47163 * 275.17475 * 5 4 2 30 30 H 1.09001 * 109.47607 * 35.17329 * 5 4 2 31 31 H 1.08995 * 109.47394 * 155.17243 * 5 4 2 32 32 H 1.08000 * 119.99509 * 359.95669 * 7 6 4 33 33 H 1.08000 * 119.99843 * 179.97438 * 8 7 6 34 34 H 0.97003 * 119.99940 * 359.97438 * 10 9 8 35 35 H 1.09000 * 109.47335 * 60.00486 * 11 10 9 36 36 H 1.09000 * 109.47403 * 299.99802 * 11 10 9 37 37 H 1.09001 * 109.47144 * 300.00513 * 14 12 11 38 38 H 1.09001 * 109.46719 * 60.00211 * 14 12 11 39 39 H 1.08995 * 109.46889 * 180.02562 * 14 12 11 40 40 H 1.09010 * 109.47052 * 54.99738 * 15 12 11 41 41 H 1.08998 * 109.46875 * 295.00517 * 15 12 11 42 42 H 0.97001 * 119.99750 * 0.28452 * 19 18 16 43 43 H 1.08002 * 119.99970 * 179.75045 * 24 9 8 44 44 H 1.07997 * 119.99460 * 180.23096 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4530 -2.4333 -0.1150 6 6 3.5779 -1.1697 0.1115 7 6 4.2601 -2.3695 0.2643 8 6 5.6364 -2.3722 0.3731 9 6 6.3386 -1.1748 0.3302 10 7 7.7331 -1.1772 0.4410 11 6 8.4738 0.0859 0.3952 12 6 9.9712 -0.1955 0.5365 13 1 10.1485 -0.7707 1.4453 14 6 10.4567 -0.9936 -0.6752 15 6 10.7338 1.1286 0.6140 16 6 12.1921 0.8537 0.8761 17 1 12.5402 -0.1636 0.9769 18 6 13.0820 1.9010 0.9873 19 7 12.6590 3.1397 0.8591 20 14 14.8898 1.5602 1.3115 21 1 15.6310 2.8452 1.3808 22 1 15.0337 0.8357 2.5997 23 1 15.4418 0.7290 0.2117 24 6 5.6557 0.0257 0.1832 25 6 4.2798 0.0276 0.0691 26 1 -0.3633 -1.0240 -0.0864 27 1 -0.3634 0.4372 0.9300 28 1 -0.3633 0.5869 -0.8437 29 1 1.1112 -2.7472 0.8713 30 1 0.5934 -2.2997 -0.7718 31 1 2.1126 -3.1950 -0.5305 32 1 3.7139 -3.3006 0.2983 33 1 6.1668 -3.3053 0.4923 34 1 8.2097 -2.0153 0.5481 35 1 8.1461 0.7292 1.2118 36 1 8.2862 0.5829 -0.5566 37 1 9.9133 -1.9369 -0.7304 38 1 10.2793 -0.4184 -1.5839 39 1 11.5232 -1.1944 -0.5742 40 1 10.3273 1.7353 1.4233 41 1 10.6288 1.6641 -0.3295 42 1 11.7203 3.3166 0.6905 43 1 6.2014 0.9573 0.1539 44 1 3.7491 0.9607 -0.0490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876835777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:30 Heat of formation + Delta-G solvation = -26.147427 kcal Electronic energy + Delta-G solvation = -22292.334596 eV Core-core repulsion = 19015.763460 eV Total energy + Delta-G solvation = -3276.571136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -41.74130 -39.93964 -38.24365 -36.87145 -35.43148 -33.83337 -31.95765 -31.24676 -29.18060 -28.39330 -28.01630 -26.71503 -24.85484 -23.90470 -22.50579 -21.11526 -20.68807 -18.94287 -18.58511 -18.43306 -17.24493 -16.88131 -16.60365 -16.10888 -15.73567 -15.58174 -15.30897 -14.82791 -14.78549 -14.61709 -14.33826 -14.20795 -13.79554 -13.66497 -13.51298 -13.47927 -13.31550 -13.05504 -12.97892 -12.59215 -12.57361 -12.13518 -12.03446 -11.96359 -11.85916 -11.47288 -11.43525 -10.64226 -10.54456 -10.30803 -10.00859 -9.87745 -8.67475 -7.98033 -6.37264 0.45770 0.55209 1.51764 1.60508 1.61913 1.79175 1.94829 2.49728 2.59242 2.97666 3.16886 3.57607 3.91029 3.98064 4.03251 4.16000 4.21411 4.22024 4.34438 4.44181 4.56514 4.58073 4.61561 4.63830 4.69404 4.74032 4.77152 4.86834 4.95936 5.02617 5.07405 5.16354 5.24465 5.26483 5.34247 5.37046 5.47616 5.55274 5.62211 5.98280 6.06543 6.19333 6.38716 6.42696 6.58385 6.88971 7.10764 7.44310 8.73142 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036540 B = 0.002502 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.102268 B =11187.790022 C =11816.793465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.492 3.508 3 O -0.578 6.578 4 N -0.552 5.552 5 C 0.057 3.943 6 C 0.070 3.930 7 C -0.098 4.098 8 C -0.175 4.175 9 C 0.187 3.813 10 N -0.738 5.738 11 C 0.144 3.856 12 C -0.077 4.077 13 H 0.064 0.936 14 C -0.123 4.123 15 C 0.016 3.984 16 C -0.605 4.605 17 H 0.057 0.943 18 C -0.044 4.044 19 N -0.942 5.942 20 Si 1.117 2.883 21 H -0.287 1.287 22 H -0.268 1.268 23 H -0.267 1.267 24 C -0.200 4.200 25 C -0.139 4.139 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.406 0.594 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.049 0.951 40 H -0.016 1.016 41 H -0.012 1.012 42 H 0.254 0.746 43 H 0.104 0.896 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.629 -17.384 -2.392 31.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.284 3.716 3 O -0.459 6.459 4 N -0.275 5.275 5 C -0.084 4.084 6 C -0.025 4.025 7 C -0.119 4.119 8 C -0.198 4.198 9 C 0.083 3.917 10 N -0.369 5.369 11 C 0.019 3.981 12 C -0.096 4.096 13 H 0.082 0.918 14 C -0.180 4.180 15 C -0.021 4.021 16 C -0.642 4.642 17 H 0.075 0.925 18 C -0.241 4.241 19 N -0.580 5.580 20 Si 0.938 3.062 21 H -0.212 1.212 22 H -0.193 1.193 23 H -0.192 1.192 24 C -0.224 4.224 25 C -0.159 4.159 26 H 0.134 0.866 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.166 0.834 34 H 0.242 0.758 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.002 0.998 41 H 0.007 0.993 42 H 0.063 0.937 43 H 0.122 0.878 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -24.880 -15.970 -2.197 29.646 hybrid contribution -0.958 -0.137 -0.157 0.980 sum -25.838 -16.107 -2.354 30.538 Atomic orbital electron populations 1.22037 0.86785 1.07217 1.06264 1.22012 0.92880 0.82075 0.74588 1.90377 1.70129 1.33828 1.51586 1.45627 1.04214 1.09101 1.68536 1.22411 0.98119 0.83364 1.04474 1.17926 0.83213 0.94401 1.06940 1.20876 0.93516 0.96775 1.00710 1.20660 0.94084 0.96364 1.08713 1.18153 0.83867 0.94412 0.95261 1.44659 1.02643 1.08347 1.81271 1.21165 0.91204 0.86314 0.99437 1.21074 0.91978 0.97384 0.99147 0.91761 1.21619 1.01059 0.99006 0.96344 1.19149 0.95505 0.93435 0.94027 1.22398 0.94300 0.95145 1.52406 0.92493 1.27455 1.10495 0.92569 0.93590 1.70918 1.17643 1.21512 1.47908 0.82936 0.69636 0.75792 0.77791 1.21233 1.19342 1.19243 1.20737 0.94684 0.96743 1.10194 1.22432 0.93580 1.00644 0.99262 0.86561 0.87606 0.87824 0.89672 0.87468 0.88958 0.81997 0.83449 0.75801 0.94235 0.93653 0.91271 0.94265 0.93175 0.99773 0.99350 0.93703 0.87792 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.02 71.24 0.71 -0.64 16 2 C 0.49 10.01 7.72 87.66 0.68 10.69 16 3 O -0.58 -17.89 13.50 -3.06 -0.04 -17.93 16 4 N -0.55 -9.91 3.10 -654.39 -2.03 -11.94 16 5 C 0.06 0.33 9.22 127.77 1.18 1.51 16 6 C 0.07 1.75 6.50 38.11 0.25 2.00 16 7 C -0.10 -1.96 9.15 22.38 0.20 -1.76 16 8 C -0.18 -4.02 9.89 22.38 0.22 -3.80 16 9 C 0.19 5.55 6.66 38.17 0.25 5.80 16 10 N -0.74 -22.14 5.47 -339.26 -1.86 -24.00 16 11 C 0.14 5.23 4.30 86.38 0.37 5.60 16 12 C -0.08 -3.13 2.37 -10.79 -0.03 -3.15 16 13 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 14 C -0.12 -4.49 8.88 71.98 0.64 -3.85 16 15 C 0.02 0.86 3.76 29.84 0.11 0.98 16 16 C -0.60 -34.45 8.41 25.60 0.22 -34.24 16 17 H 0.06 3.11 7.06 -2.91 -0.02 3.09 16 18 C -0.04 -2.61 5.46 84.66 0.46 -2.15 16 19 N -0.94 -60.00 13.65 21.45 0.29 -59.70 16 20 Si 1.12 50.86 29.90 68.60 2.05 52.92 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C -0.20 -6.70 9.31 22.39 0.21 -6.49 16 25 C -0.14 -4.48 9.04 22.38 0.20 -4.28 16 26 H 0.12 0.12 5.59 -2.39 -0.01 0.10 16 27 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.11 0.05 6.43 -2.39 -0.02 0.04 16 31 H 0.09 0.40 6.24 -2.39 -0.01 0.39 16 32 H 0.16 1.85 6.24 -2.91 -0.02 1.83 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.41 10.47 7.67 -92.71 -0.71 9.76 16 35 H 0.04 1.54 7.94 -2.39 -0.02 1.52 16 36 H 0.05 1.72 7.96 -2.39 -0.02 1.70 16 37 H 0.07 2.01 7.18 -2.39 -0.02 1.99 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.97 6.95 -2.39 -0.02 1.95 16 40 H -0.02 -0.91 8.01 -2.38 -0.02 -0.93 16 41 H -0.01 -0.67 8.00 -2.39 -0.02 -0.69 16 42 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 43 H 0.10 3.72 6.73 -2.91 -0.02 3.71 16 44 H 0.16 5.73 4.53 -61.82 -0.28 5.45 16 Total: -1.00 -78.30 350.15 4.23 -74.07 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.13 Total: 20.37 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 5.68 Total: -33.78 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -3.59 Total: -95.65 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.04 Total: -17.93 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.92 kcal Total: -78.30 4.23 -74.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876835777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.923 kcal (2) G-P(sol) polarization free energy of solvation -78.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds