Wall clock time and date at job start Tue Mar 31 2020 07:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46903 * 2 1 4 4 C 1.52995 * 109.47257 * 120.00087 * 2 1 3 5 5 C 1.50703 * 109.47130 * 294.99919 * 4 2 1 6 6 H 1.07999 * 120.00271 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00358 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99751 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47285 * 90.00237 * 9 7 5 11 11 H 1.48503 * 109.47054 * 210.00182 * 9 7 5 12 12 H 1.48497 * 109.47026 * 330.00019 * 9 7 5 13 13 C 1.53000 * 109.46951 * 240.00355 * 2 1 3 14 14 N 1.46497 * 109.47391 * 64.99847 * 13 2 1 15 15 C 1.39927 * 120.00130 * 180.02562 * 14 13 2 16 16 C 1.38866 * 120.01965 * 359.97438 * 15 14 13 17 17 C 1.38130 * 119.94756 * 179.88064 * 16 15 14 18 18 C 1.38766 * 120.30695 * 0.04125 * 17 16 15 19 19 C 1.38974 * 119.98756 * 0.13061 * 18 17 16 20 20 C 1.38637 * 120.02272 * 179.97438 * 15 14 13 21 21 N 1.39848 * 121.87312 * 179.69501 * 19 18 17 22 22 C 1.46894 * 111.00075 * 144.72713 * 21 19 18 23 23 C 1.46754 * 112.14567 * 19.93408 * 21 19 18 24 24 C 1.53428 * 108.58955 * 309.74144 * 23 21 19 25 25 O 1.36275 * 118.66378 * 180.17810 * 18 17 16 26 26 H 1.09004 * 109.46591 * 299.99906 * 1 2 3 27 27 H 1.08997 * 109.47207 * 59.99726 * 1 2 3 28 28 H 1.08994 * 109.46576 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47600 * 55.00010 * 4 2 1 30 30 H 1.09001 * 109.47318 * 175.00408 * 4 2 1 31 31 H 0.97001 * 120.00217 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46890 * 304.99563 * 13 2 1 33 33 H 1.08999 * 109.46746 * 185.00080 * 13 2 1 34 34 H 0.96995 * 119.99944 * 359.97438 * 14 13 2 35 35 H 1.08003 * 120.02339 * 359.86707 * 16 15 14 36 36 H 1.08006 * 119.84281 * 180.02562 * 17 16 15 37 37 H 1.08001 * 119.90523 * 0.02562 * 20 15 14 38 38 H 1.09002 * 109.47400 * 301.80816 * 22 21 19 39 39 H 1.09009 * 109.46762 * 61.80644 * 22 21 19 40 40 H 1.09005 * 109.47534 * 181.80612 * 22 21 19 41 41 H 1.09004 * 109.61777 * 69.47544 * 23 21 19 42 42 H 1.09000 * 109.61801 * 190.00938 * 23 21 19 43 43 H 1.09000 * 109.77487 * 182.90622 * 24 23 21 44 44 H 1.08992 * 109.77844 * 303.71307 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0808 0.9746 2.3757 7 6 1.9934 -0.4016 3.7282 8 7 1.6450 0.2773 4.7994 9 14 2.9637 -1.9883 3.9027 10 1 4.4172 -1.6849 3.8779 11 1 2.6164 -2.6419 5.1901 12 1 2.6289 -2.8994 2.7789 13 6 2.0400 -0.7212 -1.2493 14 7 1.6524 0.0354 -2.4424 15 6 2.0086 -0.4307 -3.7128 16 6 2.7300 -1.6101 -3.8430 17 6 3.0787 -2.0701 -5.0979 18 6 2.7122 -1.3584 -6.2314 19 6 1.9934 -0.1756 -6.1067 20 6 1.6416 0.2847 -4.8422 21 7 1.6092 0.5761 -7.2217 22 6 0.2961 1.1994 -7.0093 23 6 1.6207 -0.2187 -8.4553 24 6 2.9700 -0.9417 -8.5588 25 8 3.0707 -1.8448 -7.4529 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 1.6055 -1.7198 1.2952 30 1 3.1264 -0.7994 1.2056 31 1 1.8923 -0.0457 5.6800 32 1 1.6054 -1.7198 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 1.1483 0.8591 -2.3518 35 1 3.0183 -2.1671 -2.9638 36 1 3.6394 -2.9878 -5.1973 37 1 1.0810 1.2021 -4.7399 38 1 -0.4443 0.4261 -6.8046 39 1 0.3513 1.8831 -6.1621 40 1 0.0070 1.7516 -7.9036 41 1 0.8141 -0.9513 -8.4262 42 1 1.4907 0.4385 -9.3152 43 1 3.0195 -1.4978 -9.4950 44 1 3.7817 -0.2155 -8.5171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877159193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:31 Heat of formation + Delta-G solvation = -8.435053 kcal Electronic energy + Delta-G solvation = -22738.397297 eV Core-core repulsion = 19462.594227 eV Total energy + Delta-G solvation = -3275.803070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.31 seconds Orbital eigenvalues (eV) -41.04222 -38.38550 -36.89526 -36.21122 -33.69472 -32.05522 -30.77710 -29.73558 -28.62976 -27.39504 -25.89265 -25.21850 -23.87001 -22.37108 -22.04133 -19.86328 -19.36069 -18.17946 -17.20502 -17.02182 -16.71787 -15.77935 -15.06605 -14.91794 -14.78058 -14.59161 -14.43136 -14.09515 -14.04936 -13.29968 -13.24849 -13.23675 -12.78109 -12.44590 -12.31324 -12.28957 -12.00426 -11.87896 -11.52369 -11.29772 -11.05980 -10.85067 -10.74777 -10.48304 -10.18974 -9.98942 -9.75997 -9.63322 -9.24700 -9.14334 -8.55863 -8.04580 -6.95231 -6.06306 -4.04290 1.36407 1.67278 3.19367 3.29603 3.37054 3.37802 3.40289 3.75086 3.95280 4.31995 4.43380 4.57629 4.74086 4.77524 5.04966 5.10299 5.14704 5.26097 5.27030 5.32877 5.39283 5.42901 5.47531 5.54582 5.58179 5.76263 5.80568 5.97136 6.06038 6.15169 6.27832 6.32160 6.44063 6.46919 6.67776 6.71839 6.82386 6.90620 6.98345 7.17922 7.35863 7.39395 7.57738 7.76644 7.95531 8.50930 8.98011 9.56005 11.06905 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.002865 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.092006 B = 9772.454540 C =10458.988543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.006 4.006 5 C -0.516 4.516 6 H 0.073 0.927 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.740 5.740 15 C 0.224 3.776 16 C -0.190 4.190 17 C -0.072 4.072 18 C 0.017 3.983 19 C 0.090 3.910 20 C -0.210 4.210 21 N -0.493 5.493 22 C 0.027 3.973 23 C 0.015 3.985 24 C 0.061 3.939 25 O -0.320 6.320 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.018 0.982 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.398 0.602 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -1.563 -27.028 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.044 4.044 5 C -0.554 4.554 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.119 3.881 16 C -0.213 4.213 17 C -0.092 4.092 18 C -0.030 4.030 19 C -0.008 4.008 20 C -0.235 4.235 21 N -0.209 5.209 22 C -0.119 4.119 23 C -0.112 4.112 24 C -0.015 4.015 25 O -0.235 6.235 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.233 0.767 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.127 0.873 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.163 -1.473 -26.831 26.872 hybrid contribution -0.216 -0.699 0.317 0.798 sum -0.379 -2.172 -26.514 26.606 Atomic orbital electron populations 1.21725 0.95494 1.01155 1.00669 1.21238 0.95977 0.99900 0.93481 0.91393 1.19567 0.95751 0.96216 0.92894 1.21084 1.35701 1.09574 0.89058 0.90848 1.25023 0.95626 0.96943 0.95922 1.69907 1.46998 1.39296 0.98064 0.86806 0.80660 0.84395 0.77581 1.20305 1.21445 1.18974 1.21629 0.99011 0.95186 0.84089 1.44925 1.61561 1.28080 1.02312 1.17593 0.92786 0.92445 0.85313 1.20456 1.05763 0.97998 0.97081 1.20164 0.99748 0.99883 0.89374 1.18320 1.04599 0.94791 0.85308 1.18489 0.99613 0.92156 0.90576 1.20172 1.10686 1.03119 0.89542 1.58744 1.28681 1.31671 1.01759 1.22506 0.87047 0.99270 1.03082 1.22800 0.98659 0.96993 0.92758 1.23019 0.96370 0.92887 0.89260 1.86215 1.84334 1.38896 1.14016 0.91287 0.94867 0.93530 0.96351 0.96882 0.92741 0.92631 0.92582 0.76735 0.85316 0.85380 0.85670 0.94177 0.90088 0.90775 0.92598 0.88560 0.87288 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.88 37.16 0.33 -1.99 16 2 C -0.09 -1.60 2.37 -90.62 -0.22 -1.81 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 4 C -0.01 -0.15 3.52 -27.88 -0.10 -0.24 16 5 C -0.52 -14.16 8.96 -34.44 -0.31 -14.47 16 6 H 0.07 2.16 7.30 -52.49 -0.38 1.78 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 9 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.12 1.94 4.30 -4.04 -0.02 1.92 16 14 N -0.74 -10.26 5.47 -58.65 -0.32 -10.58 16 15 C 0.22 3.10 6.65 -83.78 -0.56 2.54 16 16 C -0.19 -2.58 9.31 -39.39 -0.37 -2.95 16 17 C -0.07 -0.94 9.93 -39.43 -0.39 -1.34 16 18 C 0.02 0.23 6.47 -39.11 -0.25 -0.02 16 19 C 0.09 1.16 5.82 -83.61 -0.49 0.67 16 20 C -0.21 -2.69 8.91 -39.12 -0.35 -3.04 16 21 N -0.49 -5.18 4.89 -178.67 -0.87 -6.05 16 22 C 0.03 0.22 8.89 60.06 0.53 0.76 16 23 C 0.01 0.12 5.71 -3.68 -0.02 0.10 16 24 C 0.06 0.52 7.26 37.38 0.27 0.79 16 25 O -0.32 -3.95 10.41 -20.62 -0.21 -4.17 16 26 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 27 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 30 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 32 H 0.06 0.86 7.95 -51.93 -0.41 0.45 16 33 H 0.06 0.88 7.95 -51.93 -0.41 0.46 16 34 H 0.40 5.11 7.67 -40.82 -0.31 4.80 16 35 H 0.13 1.68 6.73 -52.48 -0.35 1.32 16 36 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.13 1.42 6.07 -52.49 -0.32 1.10 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.66 6.27 -51.92 -0.33 0.33 16 40 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 41 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -31.21 345.69 -9.11 -40.31 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.99 Total: 2.57 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.03 Total: -17.30 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.42 Total: -43.36 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.21 Total: -4.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.21 -9.11 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877159193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.880 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.32 seconds